Rmu_sc0001891.1_g000048

Histidine--tRNA

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001891.1
Physical Location & Seq
Reverse (-)
172460 .. 174215
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001891.1_g000048.1.cds

Sequence Viewer

Length: 381 bp
atgtctcctttgaaggaggttatcgacagcattcatgctcaagttgcaaagattgaggatgatctcaagggtacttatgactttgcaaaagaacaaatgacaataagaaagaaagcattttcgataatagaagatgtttttaagaggcatgatgccacagccttggacactccagtttttgaattaagagacactctcatgggcaaatatggggaagactcgaaattgatttatgatcttgcttaccaggtatactatgaggttaagttaaatcatcgaaagttgttggatggaatgttggaaatatgtggagtgccgcctgaaaaattcggaactatttattctagtatcaacaagttagacaagcagtctttcgagtaa

Protein Analysis

126

Amino Acids

14.54

Weight (kDa)

5.41

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AciI CCGC 1 cut(s) 317
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 2 cut(s) 13, 182
AhdI GACNNNNNGTC 1 cut(s) 367
AjnI CCWGG 1 cut(s) 246
Alw26I GTCTC 2 cut(s) 9, 183
ApoI RAATTY 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 9, 183
BfaI CTAG 1 cut(s) 345
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 248
BmeRI GACNNNNNGTC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 24, 50
BsaJI CCNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 64, 295
BseNI ACTGG 1 cut(s) 173
BsmAI GTCTC 2 cut(s) 9, 183
BsmI GAATGC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 61, 235
BspACI CCGC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 61, 235
BssNAI GTATAC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 162
Bst1107I GTATAC 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 248
BstF5I GGATG 2 cut(s) 64, 295
BstKTI GATC 2 cut(s) 64, 238
BstMAI GTCTC 2 cut(s) 9, 183
BstMBI GATC 2 cut(s) 61, 235
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 163
BstZ17I GTATAC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 64, 295
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 35, 149, 199
CviJI RGCY 1 cut(s) 161
CviKI_1 RGCY 1 cut(s) 161
CviQI GTAC 1 cut(s) 72
DpnI GATC 2 cut(s) 63, 237
DpnII GATC 2 cut(s) 61, 235
DriI GACNNNNNGTC 1 cut(s) 367
Eam1105I GACNNNNNGTC 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 38, 152, 202
FaiI YATR 9 cut(s) 36, 78, 150, 200, 210, 234, 253, 258, 307
FatI CATG 3 cut(s) 34, 148, 198
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 2 cut(s) 71, 302
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 1 cut(s) 345
GluI GCNGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 156
Hin1II CATG 3 cut(s) 38, 152, 202
HinfI GANTC 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 47, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 3 cut(s) 38, 152, 202
Kzo9I GATC 2 cut(s) 61, 235
LpnPI CCDG 4 cut(s) 186, 233, 260, 333
LweI GCATC 1 cut(s) 142
MabI ACCWGGT 1 cut(s) 246
MaeI CTAG 1 cut(s) 345
MalI GATC 2 cut(s) 63, 237
MboI GATC 2 cut(s) 61, 235
MboII GAAGA 2 cut(s) 143, 227
MluCI AATT 3 cut(s) 182, 224, 326
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 267, 279
MnlI CCTC 4 cut(s) 10, 49, 138, 253
MseI TTAA 4 cut(s) 141, 185, 264, 269
MslI CAYNNNNRTG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 30
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 2 cut(s) 61, 235
NlaIII CATG 3 cut(s) 38, 152, 202
PctI GAATGC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 4 cut(s) 141, 185, 264, 269
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 2 cut(s) 61, 235
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 248
SetI ASST 3 cut(s) 21, 252, 264
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 39, 65
SmoI CTYRAG 2 cut(s) 39, 65
Sse9I AATT 3 cut(s) 182, 224, 326
SsiI CCGC 1 cut(s) 317
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 162
TaqI TCGA 5 cut(s) 24, 122, 221, 277, 375
TasI AATT 3 cut(s) 182, 224, 326
TauI GCSGC 1 cut(s) 319
Tru1I TTAA 4 cut(s) 141, 185, 264, 269
Tru9I TTAA 4 cut(s) 141, 185, 264, 269
TspDTI ATGAA 1 cut(s) 23
XapI RAATTY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.