Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016956

Physical Location & Seq

Genomic Coordinates Reverse (-)

41356965 .. 41390329

Gene Structure 33365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG352600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCATATGAAACTAAAGGCATGAAAGGTCTTAAGTGGGAGGTATTTATGGAGAAAGCTGGGATCTTGGGTGAAGCTGACTTTGGATTTGTAGATCACATCAATACCACAAAAGTTACCACTACATATGGTATACAACTAAGCATATTTGTTGATGAAAATGAAGAGTTCTTAAAGAAAGGAAGCTCACCAGTACTTCTAATTGAATCAAAAGGCCATGCTCTCCATGCTTTTGTCAATGATGAACTTCAAGTTCAATATTCCCAATCTCTTCTCTCCCTCAGCGACGATCTCTTAAAGTCCAACAACTTTGTAGAGGGTGTTTCTCACAAGATCAGGTGTCAGATCAAGGAGCTAGAGAGGGTTTCAGGAGTCATGAGCAGTTCTCTCACGGTGGATGGAGTTCCAGTGGATTCATACCTCACTAGAATTCATAGTCAAGTTGCAAAGATTGAGGATGATCTCAAGGGTACTCGTGACTTTGCAAAAGAACAAATGACAATGAGAAAGAAGGCATTTTCGATAATAGAAGATGTTTTTGAGAGGCATGGTGCCACAGCCCTGGATACTCCAGTTTTTGAATTGAGAGACACTCTCATGGGCAAATATGGGGAAGACTCAAAATTGATTTATGATCTTGTTGACCAGGGAGGAGAGCTTTCCTCACTGCGATATGATTTCACTGTTCCATTTGCTAGGTATGTTGCTATGAATGGCATCACATCCTTTAAAAGGTACCAGATTTCGAGGCTATCTATGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140053 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon Lyase_aromatic tRNA-synt_His

Protein Analysis

254

Amino Acids

28.64

Weight (kDa)

5.45

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	78 - 143	2.6e-07	V-ATPase subunit C
tRNA-synt_His	PF13393	157 - 237	4.6e-09	Histidyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016956)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05770
rosa_multiflora	Rmu_sc0001891.1_g000048 Rmu_sc0035133.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349340
rosa_rugosa	Rorug01G0049300
rosa_samantha	Rh1AG159400 Rh1CG148600 Rh3BG352600 Rh3CG224900 Rh5AG392200 Rh5BG404700 Rh5CG428700 Rh7AG474400
rosa_wichuraiana	Rw3G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	735
AccB1I	GGYRCC	2 cut(s)	551, 735
AccI	GTMKAC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	429
AfaI	GTAC	3 cut(s)	195, 472, 737
AfiI	CCNNNNNNNGG	1 cut(s)	732
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	4 cut(s)	206, 251, 257, 581
AjnI	CCWGG	2 cut(s)	561, 645
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	5 cut(s)	59, 77, 186, 355, 658
AluI	AGCT	5 cut(s)	59, 77, 186, 355, 658
Alw26I	GTCTC	1 cut(s)	582
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	429
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
Asp718I	GGTACC	1 cut(s)	735
AsuHPI	GGTGA	2 cut(s)	83, 180
BaeI	ACNNNNGTAYC	2 cut(s)	558, 591
BanI	GGYRCC	2 cut(s)	551, 735
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	281
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	2 cut(s)	563, 647
BciVI	GTATCC	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	3 cut(s)	356, 426, 696
BfrI	CTTAAG	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	559
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	2 cut(s)	563, 647
BmiI	GGNNCC	2 cut(s)	553, 737
BmrFI	CCNGG	2 cut(s)	563, 647
BmsI	GCATC	1 cut(s)	726
BpiI	GAAGAC	1 cut(s)	621
BplI	GAGNNNNNCTC	8 cut(s)	370, 402, 577, 609, 579, 611, 647, 679
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	561, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	732
Bse1I	ACTGG	3 cut(s)	191, 407, 572
BseBI	CCWGG	2 cut(s)	563, 647
BseDI	CCNNGG	2 cut(s)	561, 646
BseGI	GGATG	3 cut(s)	403, 463, 722
BseLI	CCNNNNNNNGG	1 cut(s)	732
BseMII	CTCAG	1 cut(s)	295
BseNI	ACTGG	3 cut(s)	191, 407, 572
BseRI	GAGGAG	1 cut(s)	666
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	2 cut(s)	551, 735
BslI	CCNNNNNNNGG	1 cut(s)	732
BsmAI	GTCTC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	7 cut(s)	63, 94, 289, 333, 345, 460, 634
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	553, 737
BspPI	GGATC	1 cut(s)	71
BspT107I	GGYRCC	2 cut(s)	551, 735
BspTI	CTTAAG	1 cut(s)	32
BsrI	ACTGG	3 cut(s)	191, 407, 572
BssECI	CCNNGG	2 cut(s)	561, 646
BssMI	GATC	7 cut(s)	63, 94, 289, 333, 345, 460, 634
BssNAI	GTATAC	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	563, 647
Bst4CI	ACNGT	2 cut(s)	394, 685
Bst6I	CTCTTC	2 cut(s)	159, 276
BstAFI	CTTAAG	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	140, 281
BstENI	CCTNNNNNAGG	1 cut(s)	730
BstF5I	GGATG	3 cut(s)	403, 463, 722
BstKTI	GATC	7 cut(s)	66, 97, 292, 336, 348, 463, 637
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	7 cut(s)	63, 94, 289, 333, 345, 460, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	2 cut(s)	563, 647
BstSCI	CCNGG	2 cut(s)	561, 645
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	63
BstZ17I	GTATAC	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	403, 463, 722
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	3 cut(s)	414, 665, 681
CciI	TCATGA	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	194, 471, 736
CviAII	CATG	6 cut(s)	22, 218, 227, 376, 548, 598
CviJI	RGCY	8 cut(s)	59, 77, 186, 216, 355, 560, 658, 751
CviKI_1	RGCY	8 cut(s)	59, 77, 186, 216, 355, 560, 658, 751
CviQI	GTAC	3 cut(s)	194, 471, 736
DdeI	CTNAG	2 cut(s)	140, 281
DpnI	GATC	7 cut(s)	65, 96, 291, 335, 347, 462, 636
DpnII	GATC	7 cut(s)	63, 94, 289, 333, 345, 460, 634
DraI	TTTAAA	1 cut(s)	730
Eam1104I	CTCTTC	2 cut(s)	159, 276
EarI	CTCTTC	2 cut(s)	159, 276
EcoNI	CCTNNNNNAGG	1 cut(s)	730
EcoRI	GAATTC	1 cut(s)	429
EcoRII	CCWGG	2 cut(s)	561, 645
FaeI	CATG	6 cut(s)	25, 221, 230, 379, 551, 601
FatI	CATG	6 cut(s)	21, 217, 226, 375, 547, 597
FauNDI	CATATG	2 cut(s)	7, 127
FblI	GTMKAC	1 cut(s)	133
FokI	GGATG	3 cut(s)	410, 470, 709
FspBI	CTAG	3 cut(s)	356, 426, 696
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	6 cut(s)	25, 221, 230, 379, 551, 601
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	4 cut(s)	206, 372, 413, 617
HphI	GGTGA	2 cut(s)	83, 180
Hpy166II	GTNNAC	2 cut(s)	134, 643
Hpy188I	TCNGA	1 cut(s)	345
Hpy188III	TCNNGA	3 cut(s)	369, 376, 476
Hpy8I	GTNNAC	2 cut(s)	134, 643
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	2 cut(s)	394, 685
HpyCH4V	TGCA	2 cut(s)	446, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	140, 281
Hsp92II	CATG	6 cut(s)	25, 221, 230, 379, 551, 601
KpnI	GGTACC	1 cut(s)	739
Kzo9I	GATC	7 cut(s)	63, 94, 289, 333, 345, 460, 634
LmnI	GCTCC	1 cut(s)	352
LweI	GCATC	1 cut(s)	726
MaeI	CTAG	3 cut(s)	356, 426, 696
MaeIII	GTNAC	2 cut(s)	115, 476
MalI	GATC	7 cut(s)	65, 96, 291, 335, 347, 462, 636
MboI	GATC	7 cut(s)	63, 94, 289, 333, 345, 460, 634
MboII	GAAGA	4 cut(s)	176, 263, 542, 626
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	4 cut(s)	201, 429, 581, 623
MlyI	GAGTC	2 cut(s)	381, 611
MmeI	TCCRAC	1 cut(s)	327
MseI	TTAA	4 cut(s)	33, 173, 296, 729
MslI	CAYNNNNRTG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	563, 647
MvaI	CCWGG	2 cut(s)	563, 647
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	2 cut(s)	7, 127
NdeII	GATC	7 cut(s)	63, 94, 289, 333, 345, 460, 634
NlaIII	CATG	6 cut(s)	25, 221, 230, 379, 551, 601
NlaIV	GGNNCC	2 cut(s)	553, 737
NmuCI	GTSAC	1 cut(s)	476
PagI	TCATGA	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	206, 413
PleI	GAGTC	2 cut(s)	380, 611
PpsI	GAGTC	2 cut(s)	380, 611
Psp6I	CCWGG	2 cut(s)	561, 645
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	561, 645
PspN4I	GGNNCC	2 cut(s)	553, 737
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	3 cut(s)	195, 472, 737
RsaNI	GTAC	3 cut(s)	194, 471, 736
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	4 cut(s)	33, 173, 296, 729
Sau3AI	GATC	7 cut(s)	63, 94, 289, 333, 345, 460, 634
ScaI	AGTACT	1 cut(s)	195
SchI	GAGTC	2 cut(s)	381, 611
ScrFI	CCNGG	2 cut(s)	563, 647
SfaNI	GCATC	1 cut(s)	726
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	32, 464
SmoI	CTYRAG	2 cut(s)	32, 464
Sse9I	AATT	4 cut(s)	201, 429, 581, 623
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	3 cut(s)	356, 426, 696
StyD4I	CCNGG	2 cut(s)	561, 645
TaaI	ACNGT	2 cut(s)	394, 685
TaqI	TCGA	2 cut(s)	521, 746
TasI	AATT	4 cut(s)	201, 429, 581, 623
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	206, 413
Tru1I	TTAA	4 cut(s)	33, 173, 296, 729
Tru9I	TTAA	4 cut(s)	33, 173, 296, 729
TscAI	CASTG	3 cut(s)	414, 672, 688
TseFI	GTSAC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	8 cut(s)	24, 38, 171, 177, 258, 405, 422, 725
TspRI	CASTG	3 cut(s)	414, 672, 688
Vha464I	CTTAAG	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	730
XapI	RAATTY	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	3 cut(s)	356, 426, 696
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.