Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016956

Physical Location & Seq

Genomic Coordinates Reverse (-)

65707194 .. 65709078

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG404700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAACCACCTCCAGGATCAAATCTCCAAGCATTCCTTCGACACTCCCCTCTACAGATTCAATATTCCCAATCTCTTCTCTCCCTTAGCGACGATCTCTTAAAGATCAAGGAGCTAGAGAGGGTTTTAGGAGTCAAGAGCAGTTCTCTCACGGTGGATGGAGTTCCAGTGGATTCATACCTCACTAGAATTCATGGTCAAGTTGCAAAGATTGAGGATGATCTCAAGGGTACTCGTGACTTTGCAAAAGAACAAATGACAATGAGAAAGAAGGCATTTTCGATAATAGAAGATGTTTTTGAGAGGCATGGTGCCACAGCCCTGGATACTCCAGTTTTTGAATTGAGAGACACTCTCATGGGCAAATATGGGGAAGACTCAAAATTGATTTATGATCTTGTTGACCAGGTACCAGATTTCGAGGCTATCTATGTGCTAACAGAACTTCTTGATGAGCTAAATATTGGAGACTATGAGTTGAAGAACTTAATGGATGATAGTCCCAGTGCTCCTTGTGGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140053 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon Lyase_aromatic tRNA-synt_His

Protein Analysis

174

Amino Acids

19.57

Weight (kDa)

4.55

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016956)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05770
rosa_multiflora	Rmu_sc0001891.1_g000048 Rmu_sc0035133.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349340
rosa_rugosa	Rorug01G0049300
rosa_samantha	Rh1AG159400 Rh1CG148600 Rh3BG352600 Rh3CG224900 Rh5AG392200 Rh5BG404700 Rh5CG428700 Rh7AG474400
rosa_wichuraiana	Rw3G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	2 cut(s)	311, 409
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	189
AfaI	GTAC	2 cut(s)	232, 411
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	3 cut(s)	62, 341, 481
AjnI	CCWGG	3 cut(s)	13, 321, 405
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	115, 457
AluI	AGCT	2 cut(s)	115, 457
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	342, 462
AlwI	GGATC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	189
Asp718I	GGTACC	1 cut(s)	409
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BanI	GGYRCC	2 cut(s)	311, 409
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	511
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	3 cut(s)	15, 323, 407
BciVI	GTATCC	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	342, 462
BfaI	CTAG	2 cut(s)	116, 186
BfmI	CTRYAG	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	319
Bme1390I	CCNGG	3 cut(s)	15, 323, 407
BmiI	GGNNCC	3 cut(s)	6, 313, 411
BmrFI	CCNGG	3 cut(s)	15, 323, 407
BmrI	ACTGGG	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	381
BplI	GAGNNNNNCTC	6 cut(s)	130, 162, 337, 369, 339, 371
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	3 cut(s)	167, 332, 504
BseBI	CCWGG	3 cut(s)	15, 323, 407
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	3 cut(s)	163, 223, 499
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	3 cut(s)	167, 332, 504
BshNI	GGYRCC	2 cut(s)	311, 409
BsiHKAI	GWGCWC	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	342, 462
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	5 cut(s)	17, 94, 105, 220, 394
BspLI	GGNNCC	3 cut(s)	6, 313, 411
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	2 cut(s)	311, 409
BsrI	ACTGG	3 cut(s)	167, 332, 504
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	5 cut(s)	17, 94, 105, 220, 394
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	3 cut(s)	15, 323, 407
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	3 cut(s)	163, 223, 499
BstKTI	GATC	5 cut(s)	20, 97, 108, 223, 397
BstMAI	GTCTC	2 cut(s)	342, 462
BstMBI	GATC	5 cut(s)	17, 94, 105, 220, 394
BstNI	CCWGG	3 cut(s)	15, 323, 407
BstSCI	CCNGG	3 cut(s)	13, 321, 405
BstSFI	CTRYAG	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	381
BstXI	CCANNNNNNTGG	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	163, 223, 499
BtsIMutI	CAGTG	2 cut(s)	174, 511
CsiI	ACCWGGT	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	231, 410
CviAII	CATG	3 cut(s)	194, 308, 358
CviJI	RGCY	4 cut(s)	115, 320, 425, 457
CviKI_1	RGCY	4 cut(s)	115, 320, 425, 457
CviQI	GTAC	2 cut(s)	231, 410
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	5 cut(s)	19, 96, 107, 222, 396
DpnII	GATC	5 cut(s)	17, 94, 105, 220, 394
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	189
EcoRII	CCWGG	3 cut(s)	13, 321, 405
FaeI	CATG	3 cut(s)	197, 311, 361
FaiI	YATR	8 cut(s)	178, 195, 309, 359, 369, 393, 432, 474
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	3 cut(s)	193, 307, 357
FokI	GGATG	3 cut(s)	170, 230, 506
FspBI	CTAG	2 cut(s)	116, 186
GsuI	CTGGAG	1 cut(s)	315
Hin1II	CATG	3 cut(s)	197, 311, 361
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	4 cut(s)	58, 132, 173, 377
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188III	TCNNGA	3 cut(s)	136, 236, 449
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	47, 265
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	206, 245
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	197, 311, 361
KpnI	GGTACC	1 cut(s)	413
Kzo9I	GATC	5 cut(s)	17, 94, 105, 220, 394
LmnI	GCTCC	2 cut(s)	112, 514
LpnPI	CCDG	9 cut(s)	27, 180, 308, 335, 345, 392, 419, 426, 517
MabI	ACCWGGT	1 cut(s)	405
MaeI	CTAG	2 cut(s)	116, 186
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	19, 96, 107, 222, 396
MboI	GATC	5 cut(s)	17, 94, 105, 220, 394
MboII	GAAGA	4 cut(s)	68, 302, 386, 493
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	3 cut(s)	189, 341, 383
MlyI	GAGTC	2 cut(s)	141, 371
MnlI	CCTC	7 cut(s)	21, 60, 114, 191, 208, 297, 415
MseI	TTAA	2 cut(s)	101, 488
MslI	CAYNNNNRTG	1 cut(s)	356
MspR9I	CCNGG	3 cut(s)	15, 323, 407
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	3 cut(s)	15, 323, 407
NdeII	GATC	5 cut(s)	17, 94, 105, 220, 394
NlaIII	CATG	3 cut(s)	197, 311, 361
NlaIV	GGNNCC	3 cut(s)	6, 313, 411
NmuCI	GTSAC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	58, 173
PfoI	TCCNGGA	1 cut(s)	13
PleI	GAGTC	2 cut(s)	140, 371
PpsI	GAGTC	2 cut(s)	140, 371
Psp6I	CCWGG	3 cut(s)	13, 321, 405
PspGI	CCWGG	3 cut(s)	13, 321, 405
PspN4I	GGNNCC	3 cut(s)	6, 313, 411
RsaI	GTAC	2 cut(s)	232, 411
RsaNI	GTAC	2 cut(s)	231, 410
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	101, 488
Sau3AI	GATC	5 cut(s)	17, 94, 105, 220, 394
SchI	GAGTC	2 cut(s)	141, 371
ScrFI	CCNGG	3 cut(s)	15, 323, 407
SduI	GDGCHC	1 cut(s)	511
SetI	ASST	5 cut(s)	13, 117, 183, 411, 459
SexAI	ACCWGGT	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	189, 341, 383
SspI	AATATT	2 cut(s)	65, 463
SspMI	CTAG	2 cut(s)	116, 186
StyD4I	CCNGG	3 cut(s)	13, 321, 405
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	3 cut(s)	40, 281, 420
TasI	AATT	3 cut(s)	189, 341, 383
TfiI	GAWTC	2 cut(s)	58, 173
Tru1I	TTAA	2 cut(s)	101, 488
Tru9I	TTAA	2 cut(s)	101, 488
TscAI	CASTG	2 cut(s)	174, 511
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	165, 182
TspRI	CASTG	2 cut(s)	174, 511
XapI	RAATTY	1 cut(s)	189
XspI	CTAG	2 cut(s)	116, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.