Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016956

Physical Location & Seq

Genomic Coordinates Reverse (-)

8144106 .. 8146643

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0049300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGAAACCAATTCTCGCTCCTCTTTACCCTTTCAGCTTGTTTCACCTCTTCGTCACCCTACTGGTGATCGGAGAGTCCACAACCATCTACTCTCCAACCGATGTTATCAACCTTGACTGTGGCTCATCCGGCGACACGGTCAGTGACAGCTCCTATGATTCTCAAACTTGGAGTGGAGATATCAACTCGAATCTTTCCCCTATAGAAGTTCGTAGTACATCCCAAGCTTTGGAAGCACCAGACTTGTTCTCGACTGTGGTGCCGTACGCCACAGCACGGCTTTCTTACTCAGAATTCACTTACCGGTTTCCCGTCAATCCTGGCCAAAAGTTCATCCGCTTGTATCTCTACCCAGATTCATACAACGCCGACTTCGACGTTTACAAGTCTCTCTTCTCTGTCAAAGCCGGTGGCTACACCCTTCTCAAAGACTTCAACGCATCTGCTAACACGAATTGGGAGATGTGCAAAGAATTCTGTATTAACATTGAGCCAGAACAACAGATGCTGAACATCACATTCACTCCCAGCAAAAATGGATACGCGTTTATCAACGGGATTGAAATTATGTCCATGCCTACCTCTCTTTACTACACTGCAGCCCAAGGCGAAGGGCCTAGTCTTATCGGCACCGGAAACCGGTACCCTGTGAAAAACAACACCGCTCTGGAGAATATCTACCGAATCAACGTCGGTGGAGGCCTGGTCTCACCGAATGAAGACACCGGCATGTACCGCAACTGGGGGTTTGCAAGTACAAATTTCTACTTATGGGCTGGTCCAAGTAGATTTTTCAGAATTCACCTTCAGCTCAAATTTGCAAGAATCCCTAACTACACTGCCCCGAAAGAGGTTTACCGAACCGGCTTGGGGAGCTACAATCTCACCTGGGGGTTTCCTGTAGATTCACATTTTTATTACCTGGTGAGGCTCCATTTTTGTGAGATTGTACCAAATTATACGATGGATGGAGATCGTGTGTTTCAGATTTTTATAAATAACCAAACAGCGGAGCAGAAAGCGGACATAATCCAATGGAGTGGAGGAAATGGGATTCCCATATATAGAGACTACCTTCTGTTCGTGCCCAGTCGTCCAAACAAGAAGAAAGGTAAAGTTGATATCATTGTTGCACTACAAGCAAATTCGAAATCTCGATATAAGGCTGCAATCTTGAATGGGCTCGAAATCTTCAAACTGAATGACACAAACGGCAATCTCGCCGGACCCAATCCCGACCCACCACCGCCACGACCTCCACCGCCACCGCCACCACCGCCGTTCTCGATCCCGACGCAAACGGAAAAACCAAATGTGAAGTCGATTCCTATGCTTGCTATCCTTGCTGGTGTAGTTTCGGTCTTATTTGTTCTTTCCCTAGTCGGGTTTTTAGTTTTTAGGCATGGAAGGAAACTCAAGGACTCCATCTCCAGCCACAGGATGACGAGGCTAGCCATGACCACTGGGTCATTTTTACCATCTTATTTGTGTCGTTACTTTTCACTGGCAGAGATCAAAGCCGCCACCAAATACTTCGATGATACTTTCATTATTGGAGCTGGGGGATTTGGCAACGTATACAAAGGATTCATCGATGGTGGAGGCACTCCAGTTGCAATCAAACGGCTGAAAGCCATGTCATCACAAGGGTCCCGCGAGTTTAGGACGGAAATTGAGATGCTCTCTCGACTCCGCCACCGCCATTTGGTGTCTCTTATCGGATTTTGTGCCGATGAAGGTGAGATGATCTTGGTGTACGATTACATGGCACGTGGGACTCTTCGTGACCATCTCTACCACACTGATAATCCACCTCTTCCATGGGAACAACGGCTTCAAATTTGTATTGGCGCGGCGCAAGGTTTGCACTATCTTCACACAGGTACCAAGGGCACCATCATTCACCGTGACATAAAGAGCACAAACATATTATTGGATGAGAAATGGGTGGCCAAGGTTTCAGATTTTGGGTTGTCAAGAAAGGGCACAATCACCGTGTCCAAGACCCACATTAGCACGAAGGTGAAGGGTAGTTTTGGATATCTTGACCCGGATTACTATCGACGTCAACAATTAACTGAGAAGTCTGATGTGTACTCCTTCGGTGTAGTGTTGTGCGAGGTATTGTGTGGAAGGCCAGCAATAACAACTGTAAAGAATAATCGAGTTGGCTTAGCTGGATGGGCCAAGAAGTGTCATCGTAATGGGAAACTTGATCAAATTATTGATCCAAATTTAAACGGTAAGATTGCGGCACGATGCTTGCAAAAATTTGTTACCATGGCGATGAATTGCATAGATGATAATGGAGTCAATCGACCTTCAATGGATAATGTTGTGAGAGGGCTTCAATTTGCATTGCAGTTGCAACAGAACAATGAGGATTATATTGATTACGTTGAAAGGACGCATGAAGATAAGATTGTTTCGATCAAGGACAATGAAGGGTCCAGTGAACAAGATTATGGGGCGAACGAATCCGTGCAAGGGTTGACTGGGACGATCTTCTCTGAGATCATTGATCCGGTTGGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140053 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon Lyase_aromatic tRNA-synt_His

Protein Analysis

845

Amino Acids

94.52

Weight (kDa)

8.63

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	38 - 399	2.7e-26	Malectin-like domain
Malectin	PF11721	273 - 358	7.2e-09	Malectin domain
Pkinase	PF00069	517 - 780	1.1e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	518 - 781	4e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016956)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05770
rosa_multiflora	Rmu_sc0001891.1_g000048 Rmu_sc0035133.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349340
rosa_rugosa	Rorug01G0049300
rosa_samantha	Rh1AG159400 Rh1CG148600 Rh3BG352600 Rh3CG224900 Rh5AG392200 Rh5BG404700 Rh5CG428700 Rh7AG474400
rosa_wichuraiana	Rw3G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	995
AasI	GACNNNNNNGTC	1 cut(s)	1465
AatII	GACGTC	1 cut(s)	2068
Acc65I	GGTACC	2 cut(s)	642, 1883
AccB1I	GGYRCC	5 cut(s)	259, 629, 642, 1883, 1892
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	1578
AccII	CGCG	3 cut(s)	545, 1656, 1853
AclWI	GGATC	3 cut(s)	1282, 2222, 2516
AcoI	YGGCCR	2 cut(s)	322, 1950
AcsI	RAATTY	9 cut(s)	293, 473, 760, 798, 815, 1144, 1839, 2233, 2270
AcuI	CTGAAG	1 cut(s)	791
AcvI	CACGTG	1 cut(s)	1772
AcyI	GRCGYC	1 cut(s)	2065
AfaI	GTAC	9 cut(s)	217, 266, 644, 734, 757, 951, 1757, 1885, 2096
AflIII	ACRYGT	1 cut(s)	543
AgeI	ACCGGT	2 cut(s)	303, 639
AgsI	TTSAA	8 cut(s)	436, 563, 1177, 1195, 1838, 2325, 2351, 2402
AjnI	CCWGG	4 cut(s)	319, 702, 887, 921
AleI	CACNNNNGTG	1 cut(s)	2021
AluBI	AGCT	7 cut(s)	36, 150, 227, 811, 876, 1559, 2177
AluI	AGCT	7 cut(s)	36, 150, 227, 811, 876, 1559, 2177
Alw21I	GWGCWC	1 cut(s)	1922
Alw26I	GTCTC	4 cut(s)	393, 712, 1062, 1716
AlwI	GGATC	3 cut(s)	1282, 2222, 2516
AlwNI	CAGNNNCTG	1 cut(s)	508
AoxI	GGCC	6 cut(s)	322, 614, 700, 1950, 2135, 2184
ApeKI	GCWGC	2 cut(s)	599, 1166
ApoI	RAATTY	9 cut(s)	293, 473, 760, 798, 815, 1144, 1839, 2233, 2270
ArsI	GACNNNNNNTTYG	2 cut(s)	1304, 1336
AsiGI	ACCGGT	2 cut(s)	303, 639
Asp718I	GGTACC	2 cut(s)	642, 1883
AspLEI	GCGC	2 cut(s)	1853, 1858
AspS9I	GGNCC	6 cut(s)	614, 779, 1226, 1650, 2184, 2448
AsuC2I	CCSGG	1 cut(s)	2051
AsuII	TTCGAA	1 cut(s)	1148
AsuNHI	GCTAGC	1 cut(s)	1450
AvaII	GGWCC	4 cut(s)	779, 1226, 1650, 2448
BaeGI	GKGCMC	3 cut(s)	1089, 1895, 1988
BaeI	ACNNNNGTAYC	2 cut(s)	1867, 1900
BalI	TGGCCA	2 cut(s)	324, 1952
BanI	GGYRCC	5 cut(s)	259, 629, 642, 1883, 1892
BanII	GRGCYC	1 cut(s)	1185
BbrPI	CACGTG	1 cut(s)	1772
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	1922
BbvI	GCAGC	2 cut(s)	611, 1153
BccI	CCATC	9 cut(s)	92, 958, 962, 1433, 1486, 1589, 1797, 1904, 2175
BceAI	ACGGC	6 cut(s)	247, 293, 1228, 1264, 1640, 1847
BcgI	CGANNNNNNTGC	4 cut(s)	241, 275, 1312, 1346
BciT130I	CCWGG	4 cut(s)	321, 704, 889, 923
BciVI	GTATCC	1 cut(s)	533
BclI	TGATCA	1 cut(s)	2215
BcnI	CCSGG	1 cut(s)	2051
BcoDI	GTCTC	4 cut(s)	393, 712, 1062, 1716
BfaI	CTAG	3 cut(s)	618, 1379, 1451
BfmI	CTRYAG	3 cut(s)	201, 597, 900
BfuI	GTATCC	1 cut(s)	533
BisI	GCNGC	5 cut(s)	600, 1167, 1521, 1854, 2253
BlpI	GCTNAGC	1 cut(s)	2173
BlsI	GCNGC	5 cut(s)	601, 1168, 1522, 1855, 2254
Bme1390I	CCNGG	5 cut(s)	321, 704, 889, 923, 2051
Bme18I	GGWCC	4 cut(s)	779, 1226, 1650, 2448
BmgT120I	GGNCC	6 cut(s)	614, 779, 1226, 1650, 2184, 2448
BmrFI	CCNGG	5 cut(s)	321, 704, 889, 923, 2051
BmrI	ACTGGG	4 cut(s)	751, 1083, 1473, 2505
BmsI	GCATC	4 cut(s)	449, 495, 1668, 2249
BmtI	GCTAGC	1 cut(s)	1454
BmuI	ACTGGG	4 cut(s)	751, 1083, 1473, 2505
BpiI	GAAGAC	1 cut(s)	726
BplI	GAGNNNNNCTC	2 cut(s)	1667, 1699
BpmI	CTGGAG	3 cut(s)	689, 1414, 1593
Bpu1102I	GCTNAGC	1 cut(s)	2173
Bpu14I	TTCGAA	1 cut(s)	1148
BpuEI	CTTGAG	1 cut(s)	1400
BpuMI	CCSGG	1 cut(s)	2051
Bsa29I	ATCGAT	1 cut(s)	1593
BsaAI	YACGTR	1 cut(s)	1772
BsaBI	GATNNNNATC	2 cut(s)	972, 2058
BsaHI	GRCGYC	1 cut(s)	2065
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	6 cut(s)	604, 888, 1820, 1887, 1953, 2280
BsaWI	WCCGGW	4 cut(s)	303, 632, 639, 2524
BsaXI	ACNNNNNCTCC	8 cut(s)	508, 538, 690, 720, 963, 993, 1412, 1442
Bse118I	RCCGGY	5 cut(s)	303, 407, 639, 725, 863
Bse1I	ACTGG	8 cut(s)	66, 746, 1089, 1468, 1509, 1610, 2451, 2500
Bse3DI	GCAATG	1 cut(s)	2357
Bse8I	GATNNNNATC	2 cut(s)	972, 2058
BseBI	CCWGG	4 cut(s)	321, 704, 889, 923
BseCI	ATCGAT	1 cut(s)	1593
BseDI	CCNNGG	6 cut(s)	604, 888, 1820, 1887, 1953, 2280
BseGI	GGATG	7 cut(s)	125, 218, 333, 973, 1446, 1942, 2186
BseJI	GATNNNNATC	2 cut(s)	972, 2058
BseMI	GCAATG	1 cut(s)	2357
BseMII	CTCAG	3 cut(s)	303, 2070, 2502
BseNI	ACTGG	8 cut(s)	66, 746, 1089, 1468, 1509, 1610, 2451, 2500
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	3 cut(s)	1089, 1895, 1988
BseXI	GCAGC	2 cut(s)	611, 1153
BseYI	CCCAGC	2 cut(s)	527, 1559
Bsh1236I	CGCG	3 cut(s)	545, 1656, 1853
BshFI	GGCC	6 cut(s)	324, 616, 702, 1952, 2137, 2186
BshNI	GGYRCC	5 cut(s)	259, 629, 642, 1883, 1892
BshTI	ACCGGT	2 cut(s)	303, 639
BshVI	ATCGAT	1 cut(s)	1593
BsiHKAI	GWGCWC	1 cut(s)	1922
BsiWI	CGTACG	1 cut(s)	264
BslFI	GGGAC	3 cut(s)	1636, 1789, 2512
BsmAI	GTCTC	4 cut(s)	393, 712, 1062, 1716
BsmFI	GGGAC	3 cut(s)	1636, 1789, 2512
BsnI	GGCC	6 cut(s)	324, 616, 702, 1952, 2137, 2186
Bso31I	GGTCTC	1 cut(s)	712
Bsp119I	TTCGAA	1 cut(s)	1148
Bsp1286I	GDGCHC	5 cut(s)	1089, 1185, 1895, 1922, 1988
Bsp1720I	GCTNAGC	1 cut(s)	2173
Bsp19I	CCATGG	2 cut(s)	1820, 2280
BspANI	GGCC	6 cut(s)	324, 616, 702, 1952, 2137, 2186
BspCNI	CTCAG	3 cut(s)	302, 2071, 2503
BspDI	ATCGAT	1 cut(s)	1593
BspFNI	CGCG	3 cut(s)	545, 1656, 1853
BspMAI	CTGCAG	1 cut(s)	601
BspOI	GCTAGC	1 cut(s)	1454
BspPI	GGATC	3 cut(s)	1282, 2222, 2516
BspT104I	TTCGAA	1 cut(s)	1148
BspT107I	GGYRCC	5 cut(s)	259, 629, 642, 1883, 1892
BspTNI	GGTCTC	1 cut(s)	712
BsrBI	CCGCTC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	2357
BsrFI	RCCGGY	5 cut(s)	303, 407, 639, 725, 863
BsrI	ACTGG	8 cut(s)	66, 746, 1089, 1468, 1509, 1610, 2451, 2500
BssAI	RCCGGY	5 cut(s)	303, 407, 639, 725, 863
BssECI	CCNNGG	6 cut(s)	604, 888, 1820, 1887, 1953, 2280
BssNAI	GTATAC	1 cut(s)	1579
BssNI	GRCGYC	1 cut(s)	2065
BssT1I	CCWWGG	5 cut(s)	604, 1820, 1887, 1953, 2280
Bst1107I	GTATAC	1 cut(s)	1579
Bst2UI	CCWGG	4 cut(s)	321, 704, 889, 923
Bst4CI	ACNGT	7 cut(s)	119, 139, 256, 1907, 1996, 2152, 2243
Bst6I	CTCTTC	4 cut(s)	53, 398, 1785, 1821
BstACI	GRCGYC	1 cut(s)	2065
BstAPI	GCANNNNNTGC	1 cut(s)	1864
BstBAI	YACGTR	1 cut(s)	1772
BstBI	TTCGAA	1 cut(s)	1148
BstC8I	GCNNGC	4 cut(s)	1335, 1452, 2139, 2264
BstDEI	CTNAG	4 cut(s)	289, 2079, 2173, 2511
BstDSI	CCRYGG	2 cut(s)	1820, 2280
BstF5I	GGATG	7 cut(s)	125, 218, 333, 973, 1446, 1942, 2186
BstFNI	CGCG	3 cut(s)	545, 1656, 1853
BstHHI	GCGC	2 cut(s)	1853, 1858
BstMAI	GTCTC	4 cut(s)	393, 712, 1062, 1716
BstMWI	GCNNNNNNNGC	9 cut(s)	129, 233, 735, 873, 1139, 1276, 1343, 1864, 2183
BstNI	CCWGG	4 cut(s)	321, 704, 889, 923
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	5 cut(s)	319, 702, 887, 921, 2049
BstSFI	CTRYAG	3 cut(s)	201, 597, 900
BstSLI	GKGCMC	3 cut(s)	1089, 1895, 1988
BstUI	CGCG	3 cut(s)	545, 1656, 1853
BstV1I	GCAGC	2 cut(s)	611, 1153
BstV2I	GAAGAC	1 cut(s)	726
BstXI	CCANNNNNNTGG	1 cut(s)	1040
BstZ17I	GTATAC	1 cut(s)	1579
Bsu15I	ATCGAT	1 cut(s)	1593
BsuI	GTATCC	1 cut(s)	533
BsuRI	GGCC	6 cut(s)	324, 616, 702, 1952, 2137, 2186
BsuTUI	ATCGAT	1 cut(s)	1593
BtgI	CCRYGG	2 cut(s)	1820, 2280
BtgZI	GCGATG	1 cut(s)	2300
BtsCI	GGATG	7 cut(s)	125, 218, 333, 973, 1446, 1942, 2186
BtsI	GCAGTG	2 cut(s)	594, 837
BtsIMutI	CAGTG	7 cut(s)	148, 594, 837, 1461, 1502, 1800, 2458
Cac8I	GCNNGC	4 cut(s)	1335, 1452, 2139, 2264
CaiI	CAGNNNCTG	1 cut(s)	508
CfoI	GCGC	2 cut(s)	1853, 1858
Cfr10I	RCCGGY	5 cut(s)	303, 407, 639, 725, 863
Cfr13I	GGNCC	6 cut(s)	614, 779, 1226, 1650, 2184, 2448
ClaI	ATCGAT	1 cut(s)	1593
CseI	GACGC	2 cut(s)	1303, 2416
CsiI	ACCWGGT	1 cut(s)	921
Csp6I	GTAC	9 cut(s)	216, 265, 643, 733, 756, 950, 1756, 1884, 2095
CspAI	ACCGGT	2 cut(s)	303, 639
CspCI	CAANNNNNGTGG	4 cut(s)	391, 426, 676, 711
CviAII	CATG	9 cut(s)	574, 730, 1403, 1456, 1636, 1765, 1821, 2281, 2411
CviQI	GTAC	9 cut(s)	216, 265, 643, 733, 756, 950, 1756, 1884, 2095
DdeI	CTNAG	4 cut(s)	289, 2079, 2173, 2511
DraI	TTTAAA	1 cut(s)	2238
DrdI	GACNNNNNNGTC	1 cut(s)	1465
DseDI	GACNNNNNNGTC	1 cut(s)	1465
EaeI	YGGCCR	2 cut(s)	322, 1950
Eam1104I	CTCTTC	4 cut(s)	53, 398, 1785, 1821
EarI	CTCTTC	4 cut(s)	53, 398, 1785, 1821
EciI	GGCGGA	1 cut(s)	1682
Eco130I	CCWWGG	5 cut(s)	604, 1820, 1887, 1953, 2280
Eco147I	AGGCCT	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	1185
Eco31I	GGTCTC	1 cut(s)	712
Eco32I	GATATC	3 cut(s)	181, 1123, 2042
Eco47I	GGWCC	4 cut(s)	779, 1226, 1650, 2448
Eco57I	CTGAAG	1 cut(s)	791
Eco72I	CACGTG	1 cut(s)	1772
EcoO109I	RGGNCCY	2 cut(s)	614, 1650
EcoRI	GAATTC	3 cut(s)	293, 473, 798
EcoRII	CCWGG	4 cut(s)	319, 702, 887, 921
EcoRV	GATATC	3 cut(s)	181, 1123, 2042
EcoT14I	CCWWGG	5 cut(s)	604, 1820, 1887, 1953, 2280
EcoT38I	GRGCYC	1 cut(s)	1185
ErhI	CCWWGG	5 cut(s)	604, 1820, 1887, 1953, 2280
FaeI	CATG	9 cut(s)	577, 733, 1406, 1459, 1639, 1768, 1824, 2284, 2414
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	3 cut(s)	1636, 1789, 2512
FatI	CATG	9 cut(s)	573, 729, 1402, 1455, 1635, 1764, 1820, 2280, 2410
FauI	CCCGC	1 cut(s)	1661
FbaI	TGATCA	1 cut(s)	2215
FblI	GTMKAC	1 cut(s)	1578
Fnu4HI	GCNGC	5 cut(s)	600, 1167, 1521, 1854, 2253
FokI	GGATG	7 cut(s)	112, 205, 320, 980, 1453, 1949, 2193
FriOI	GRGCYC	1 cut(s)	1185
Fsp4HI	GCNGC	5 cut(s)	600, 1167, 1521, 1854, 2253
FspBI	CTAG	3 cut(s)	618, 1379, 1451
GlaI	GCGC	2 cut(s)	1852, 1857
GluI	GCNGC	5 cut(s)	600, 1167, 1521, 1854, 2253
GsaI	CCCAGC	2 cut(s)	531, 1563
GsuI	CTGGAG	3 cut(s)	689, 1414, 1593
HaeIII	GGCC	6 cut(s)	324, 616, 702, 1952, 2137, 2186
HgaI	GACGC	2 cut(s)	1303, 2416
HhaI	GCGC	2 cut(s)	1853, 1858
Hin1I	GRCGYC	1 cut(s)	2065
Hin1II	CATG	9 cut(s)	577, 733, 1406, 1459, 1639, 1768, 1824, 2284, 2414
Hin6I	GCGC	2 cut(s)	1851, 1856
HinP1I	GCGC	2 cut(s)	1851, 1856
HincII	GTYRAC	2 cut(s)	2069, 2493
HindII	GTYRAC	2 cut(s)	2069, 2493
HindIII	AAGCTT	1 cut(s)	225
Hpy166II	GTNNAC	9 cut(s)	78, 382, 856, 1579, 1756, 2069, 2095, 2456, 2493
Hpy188I	TCNGA	8 cut(s)	71, 292, 797, 987, 1721, 1963, 2089, 2512
Hpy8I	GTNNAC	9 cut(s)	78, 382, 856, 1579, 1756, 2069, 2095, 2456, 2493
Hpy99I	CGWCG	4 cut(s)	380, 695, 1297, 2067
HpyCH4III	ACNGT	7 cut(s)	119, 139, 256, 1907, 1996, 2152, 2243
HpyCH4IV	ACGT	6 cut(s)	378, 690, 1575, 1771, 2065, 2397
HpyF10VI	GCNNNNNNNGC	9 cut(s)	129, 233, 735, 873, 1139, 1276, 1343, 1864, 2183
HpyF3I	CTNAG	4 cut(s)	289, 2079, 2173, 2511
HpySE526I	ACGT	6 cut(s)	378, 690, 1575, 1771, 2065, 2397
Hsp92I	GRCGYC	1 cut(s)	2065
Hsp92II	CATG	9 cut(s)	577, 733, 1406, 1459, 1639, 1768, 1824, 2284, 2414
HspAI	GCGC	2 cut(s)	1851, 1856
KflI	GGGWCCC	1 cut(s)	1650
KpnI	GGTACC	2 cut(s)	646, 1887
Ksp22I	TGATCA	1 cut(s)	2215
LmnI	GCTCC	6 cut(s)	22, 155, 873, 936, 1012, 1556
Lsp1109I	GCAGC	2 cut(s)	611, 1153
LweI	GCATC	4 cut(s)	449, 495, 1668, 2249
MabI	ACCWGGT	1 cut(s)	921
MaeI	CTAG	3 cut(s)	618, 1379, 1451
MaeII	ACGT	6 cut(s)	378, 690, 1575, 1771, 2065, 2397
MaeIII	GTNAC	6 cut(s)	52, 143, 1493, 1784, 1907, 2275
MbiI	CCGCTC	1 cut(s)	665
MhlI	GDGCHC	5 cut(s)	1089, 1185, 1895, 1922, 1988
MlsI	TGGCCA	2 cut(s)	324, 1952
MluI	ACGCGT	1 cut(s)	543
MluNI	TGGCCA	2 cut(s)	324, 1952
MlyI	GAGTC	5 cut(s)	83, 1415, 1683, 1771, 2319
MmeI	TCCRAC	1 cut(s)	119
Mox20I	TGGCCA	2 cut(s)	324, 1952
MscI	TGGCCA	2 cut(s)	324, 1952
MseI	TTAA	3 cut(s)	483, 2075, 2237
MslI	CAYNNNNRTG	5 cut(s)	728, 939, 2021, 2202, 2285
Msp20I	TGGCCA	2 cut(s)	324, 1952
MspA1I	CMGCKG	1 cut(s)	1010
MspR9I	CCNGG	5 cut(s)	321, 704, 889, 923, 2051
MteI	GCGCNGCGC	1 cut(s)	1854
MvaI	CCWGG	4 cut(s)	321, 704, 889, 923
MvnI	CGCG	3 cut(s)	545, 1656, 1853
MwoI	GCNNNNNNNGC	9 cut(s)	129, 233, 735, 873, 1139, 1276, 1343, 1864, 2183
NciI	CCSGG	1 cut(s)	2051
NcoI	CCATGG	2 cut(s)	1820, 2280
NheI	GCTAGC	1 cut(s)	1450
NlaIII	CATG	9 cut(s)	577, 733, 1406, 1459, 1639, 1768, 1824, 2284, 2414
NmuCI	GTSAC	4 cut(s)	52, 143, 1784, 1907
NspI	RCATGY	1 cut(s)	733
NspV	TTCGAA	1 cut(s)	1148
OliI	CACNNNNGTG	1 cut(s)	2021
PceI	AGGCCT	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
Pfl23II	CGTACG	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	229
PinAI	ACCGGT	2 cut(s)	303, 639
PkrI	GCNGC	5 cut(s)	601, 1168, 1522, 1855, 2254
PleI	GAGTC	5 cut(s)	82, 1415, 1683, 1771, 2318
PmaCI	CACGTG	1 cut(s)	1772
PmlI	CACGTG	1 cut(s)	1772
PpsI	GAGTC	5 cut(s)	82, 1415, 1683, 1771, 2318
Ppu21I	YACGTR	1 cut(s)	1772
PpuMI	RGGWCCY	1 cut(s)	1650
PsiI	TTATAA	1 cut(s)	995
Psp5II	RGGWCCY	1 cut(s)	1650
Psp6I	CCWGG	4 cut(s)	319, 702, 887, 921
PspCI	CACGTG	1 cut(s)	1772
PspFI	CCCAGC	2 cut(s)	527, 1559
PspGI	CCWGG	4 cut(s)	319, 702, 887, 921
PspLI	CGTACG	1 cut(s)	264
PspPI	GGNCC	6 cut(s)	614, 779, 1226, 1650, 2184, 2448
PspPPI	RGGWCCY	1 cut(s)	1650
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	508
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	9 cut(s)	217, 266, 644, 734, 757, 951, 1757, 1885, 2096
RsaNI	GTAC	9 cut(s)	216, 265, 643, 733, 756, 950, 1756, 1884, 2095
RseI	CAYNNNNRTG	5 cut(s)	728, 939, 2021, 2202, 2285
SaqAI	TTAA	3 cut(s)	483, 2075, 2237
SatI	GCNGC	5 cut(s)	600, 1167, 1521, 1854, 2253
Sau96I	GGNCC	6 cut(s)	614, 779, 1226, 1650, 2184, 2448
SchI	GAGTC	5 cut(s)	83, 1415, 1683, 1771, 2319
ScrFI	CCNGG	5 cut(s)	321, 704, 889, 923, 2051
SduI	GDGCHC	5 cut(s)	1089, 1185, 1895, 1922, 1988
SexAI	ACCWGGT	1 cut(s)	921
SfaNI	GCATC	4 cut(s)	449, 495, 1668, 2249
SfcI	CTRYAG	3 cut(s)	201, 597, 900
SfuI	TTCGAA	1 cut(s)	1148
SinI	GGWCC	4 cut(s)	779, 1226, 1650, 2448
SmiMI	CAYNNNNRTG	5 cut(s)	728, 939, 2021, 2202, 2285
SmlI	CTYRAG	1 cut(s)	1415
SmoI	CTYRAG	1 cut(s)	1415
SseBI	AGGCCT	1 cut(s)	702
SspMI	CTAG	3 cut(s)	618, 1379, 1451
StuI	AGGCCT	1 cut(s)	702
StyD4I	CCNGG	5 cut(s)	319, 702, 887, 921, 2049
StyI	CCWWGG	5 cut(s)	604, 1820, 1887, 1953, 2280
TaaI	ACNGT	7 cut(s)	119, 139, 256, 1907, 1996, 2152, 2243
TaiI	ACGT	6 cut(s)	381, 693, 1578, 1774, 2068, 2400
TaqII	GACCGA	1 cut(s)	1348
TatI	WGTACW	3 cut(s)	215, 755, 2094
TauI	GCSGC	3 cut(s)	1523, 1856, 2255
Tru1I	TTAA	3 cut(s)	483, 2075, 2237
Tru9I	TTAA	3 cut(s)	483, 2075, 2237
TscAI	CASTG	7 cut(s)	148, 601, 844, 1468, 1509, 1807, 2458
TseFI	GTSAC	4 cut(s)	52, 143, 1784, 1907
TseI	GCWGC	2 cut(s)	599, 1166
Tsp45I	GTSAC	4 cut(s)	52, 143, 1784, 1907
TspGWI	ACGGA	3 cut(s)	1316, 1682, 2470
TspRI	CASTG	7 cut(s)	148, 601, 844, 1468, 1509, 1807, 2458
Tth111I	GACNNNGTC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	4 cut(s)	779, 1226, 1650, 2448
XapI	RAATTY	9 cut(s)	293, 473, 760, 798, 815, 1144, 1839, 2233, 2270
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1818
XmiI	GTMKAC	1 cut(s)	1578
XspI	CTAG	3 cut(s)	618, 1379, 1451
ZraI	GACGTC	1 cut(s)	2066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.