Rh5AG392200

Histidine--tRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016956
Physical Location & Seq
Reverse (-)
68030735 .. 68033006
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG392200.1

Sequence Viewer

Length: 309 bp
ATGTCTCCTTTGAAGGAGGTTATCGACAGAATTCATGGTCAAGTTACAAAGATTGAGGATGATCTCAAGGGTACTCGTGACTTTGCAAATAAAGAACAAATGACAATGAGAAAGAAGGCATTTTCGATAATAGAAGATGTTTTTGAGAGGCATGGTGCCACAGCCCTGGATACTCCAGTTTTTGAATTGAGAGACACTCTCATGGGCAAATATGGGGAAGACTCAAAATTGATTTATGATCTTGTTGACCAGGGAGGAGAGCTTTCCTCACTGCGATATGATTTCACTGTTCCATTTGCTAGATCCTAA

Protein Analysis

102

Amino Acids

11.67

Weight (kDa)

5.13

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_His PF13393 30 - 101 8.5e-08 Histidyl-tRNA synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 2 cut(s) 13, 185
AjnI CCWGG 2 cut(s) 165, 249
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 9, 186
AlwI GGATC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 30
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BanI GGYRCC 1 cut(s) 155
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 167, 251
BciVI GTATCC 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 9, 186
BfaI CTAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 167, 251
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 2 cut(s) 167, 251
BpiI GAAGAC 1 cut(s) 225
BplI GAGNNNNNCTC 6 cut(s) 181, 213, 183, 215, 251, 283
BpmI CTGGAG 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 165, 250
Bse1I ACTGG 1 cut(s) 176
BseBI CCWGG 2 cut(s) 167, 251
BseDI CCNNGG 2 cut(s) 165, 250
BseGI GGATG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 9, 186
Bsp143I GATC 3 cut(s) 61, 238, 302
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 165, 250
BssMI GATC 3 cut(s) 61, 238, 302
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 167, 251
Bst4CI ACNGT 1 cut(s) 289
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 3 cut(s) 64, 241, 305
BstMAI GTCTC 2 cut(s) 9, 186
BstMBI GATC 3 cut(s) 61, 238, 302
BstNI CCWGG 2 cut(s) 167, 251
BstSCI CCNGG 2 cut(s) 165, 249
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 302
BsuI GTATCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 285
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 35, 152, 202
CviJI RGCY 2 cut(s) 164, 262
CviKI_1 RGCY 2 cut(s) 164, 262
CviQI GTAC 1 cut(s) 72
DpnI GATC 3 cut(s) 63, 240, 304
DpnII GATC 3 cut(s) 61, 238, 302
EcoRI GAATTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 165, 249
FaeI CATG 3 cut(s) 38, 155, 205
FaiI YATR 6 cut(s) 36, 153, 203, 213, 237, 279
FatI CATG 3 cut(s) 34, 151, 201
FokI GGATG 1 cut(s) 71
FspBI CTAG 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 159
Hin1II CATG 3 cut(s) 38, 155, 205
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 7, 109
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 86
Hsp92II CATG 3 cut(s) 38, 155, 205
Kzo9I GATC 3 cut(s) 61, 238, 302
LpnPI CCDG 5 cut(s) 152, 179, 189, 236, 263
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 43, 77
MalI GATC 3 cut(s) 63, 240, 304
MboI GATC 3 cut(s) 61, 238, 302
MboII GAAGA 2 cut(s) 146, 230
MflI RGATCY 1 cut(s) 302
MluCI AATT 3 cut(s) 30, 185, 227
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 5 cut(s) 10, 49, 141, 248, 277
MslI CAYNNNNRTG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 167, 251
MvaI CCWGG 2 cut(s) 167, 251
NdeII GATC 3 cut(s) 61, 238, 302
NlaIII CATG 3 cut(s) 38, 155, 205
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 77
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 165, 249
PspGI CCWGG 2 cut(s) 165, 249
PspN4I GGNNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 200
Sau3AI GATC 3 cut(s) 61, 238, 302
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 167, 251
SetI ASST 2 cut(s) 21, 264
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 3 cut(s) 30, 185, 227
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 165, 249
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 24, 125
TasI AATT 3 cut(s) 30, 185, 227
TscAI CASTG 2 cut(s) 276, 292
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 2 cut(s) 276, 292
XapI RAATTY 1 cut(s) 30
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.