Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016956

Physical Location & Seq

Genomic Coordinates Reverse (-)

59413490 .. 59415303

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG428700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCTCCTTTGAAGGAGGTTATCGACAGAATTCATGGTCAAGTTGCAAAGATTGAGGATGATCTCAAGGGTACTCGTGACTTTGCAAAAGAACAAATGACAATGAGAAAGAAGGCATTTTCGATAATAGAAGATGTTTTTGAGAGGCATGGTGCCACAGCCCTGGATACTCCAGTTTTTGAATTGAGAGACACTCTCATGGGCAAATATGGGGAAGACTCAAAATTGATTTATGATCTTGTTGACCAGGTACCAGATTTCGAGGCTATCTATGTGCTAACAGAACTTCTTGATGAGCTAAATATTGGAGACTATGAGACTCTTTTTAAGCAAAGTTGCAGCCCATCATTGTTAAAGATCATGACCCTCCCCTACCTTAGGGATATTACCACCACATTTCCAAGTTTTGTATTTAATTCAGAGGTTGATGAGATTGCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140053 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon Lyase_aromatic tRNA-synt_His

Protein Analysis

147

Amino Acids

16.84

Weight (kDa)

4.51

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016956)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05770
rosa_multiflora	Rmu_sc0001891.1_g000048 Rmu_sc0035133.1_g000001
rosa_roxburghii	Rroxscaffold_5G00349340
rosa_rugosa	Rorug01G0049300
rosa_samantha	Rh1AG159400 Rh1CG148600 Rh3BG352600 Rh3CG224900 Rh5AG392200 Rh5BG404700 Rh5CG428700 Rh7AG474400
rosa_wichuraiana	Rw3G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	250
AccB1I	GGYRCC	2 cut(s)	152, 250
AcsI	RAATTY	1 cut(s)	30
AfaI	GTAC	2 cut(s)	73, 252
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	13, 182
AjnI	CCWGG	2 cut(s)	162, 246
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	4 cut(s)	9, 183, 303, 311
ApeKI	GCWGC	1 cut(s)	339
ApoI	RAATTY	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	377
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BanI	GGYRCC	2 cut(s)	152, 250
BauI	CACGAG	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	2 cut(s)	164, 248
BciVI	GTATCC	1 cut(s)	160
BcoDI	GTCTC	4 cut(s)	9, 183, 303, 311
BfuI	GTATCC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	164, 248
BmiI	GGNNCC	2 cut(s)	154, 252
BmrFI	CCNGG	2 cut(s)	164, 248
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	4 cut(s)	178, 210, 180, 212
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	173
Bse21I	CCTNAGG	1 cut(s)	377
BseBI	CCWGG	2 cut(s)	164, 248
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	351
BshNI	GGYRCC	2 cut(s)	152, 250
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	4 cut(s)	9, 183, 303, 311
Bsp143I	GATC	3 cut(s)	61, 235, 357
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	154, 252
BspT107I	GGYRCC	2 cut(s)	152, 250
BsrI	ACTGG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	61, 235, 357
BssSI	CACGAG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	164, 248
BstBAI	YACGTR	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	377
BstENI	CCTNNNNNAGG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	64, 238, 360
BstMAI	GTCTC	4 cut(s)	9, 183, 303, 311
BstMBI	GATC	3 cut(s)	61, 235, 357
BstNI	CCWGG	2 cut(s)	164, 248
BstSCI	CCNGG	2 cut(s)	162, 246
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	222
BstXI	CCANNNNNNTGG	1 cut(s)	163
Bsu36I	CCTNAGG	1 cut(s)	377
BsuI	GTATCC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	360
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	72, 251
CviAII	CATG	4 cut(s)	35, 149, 199, 361
CviJI	RGCY	4 cut(s)	161, 266, 298, 342
CviKI_1	RGCY	4 cut(s)	161, 266, 298, 342
CviQI	GTAC	2 cut(s)	72, 251
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	3 cut(s)	63, 237, 359
DpnII	GATC	3 cut(s)	61, 235, 357
Eco81I	CCTNAGG	1 cut(s)	377
EcoNI	CCTNNNNNAGG	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	162, 246
FaeI	CATG	4 cut(s)	38, 152, 202, 364
FaiI	YATR	8 cut(s)	36, 150, 200, 210, 234, 273, 315, 362
FatI	CATG	4 cut(s)	34, 148, 198, 360
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	340
GluI	GCNGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	156
Hin1II	CATG	4 cut(s)	38, 152, 202, 364
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	218, 319
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	3 cut(s)	77, 290, 361
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	7, 106
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	3 cut(s)	47, 86, 339
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	4 cut(s)	38, 152, 202, 364
KpnI	GGTACC	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	61, 235, 357
LpnPI	CCDG	6 cut(s)	149, 176, 186, 233, 260, 267
Lsp1109I	GCAGC	1 cut(s)	351
MabI	ACCWGGT	1 cut(s)	246
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	63, 237, 359
MboI	GATC	3 cut(s)	61, 235, 357
MboII	GAAGA	2 cut(s)	143, 227
MluCI	AATT	4 cut(s)	30, 182, 224, 415
MlyI	GAGTC	2 cut(s)	212, 313
MnlI	CCTC	6 cut(s)	10, 49, 138, 256, 377, 415
MseI	TTAA	3 cut(s)	327, 353, 414
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	164, 248
MvaI	CCWGG	2 cut(s)	164, 248
NdeII	GATC	3 cut(s)	61, 235, 357
NlaIII	CATG	4 cut(s)	38, 152, 202, 364
NlaIV	GGNNCC	2 cut(s)	154, 252
NmuCI	GTSAC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	2 cut(s)	212, 313
PpsI	GAGTC	2 cut(s)	212, 313
Ppu21I	YACGTR	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	162, 246
PspGI	CCWGG	2 cut(s)	162, 246
PspN4I	GGNNCC	2 cut(s)	154, 252
RsaI	GTAC	2 cut(s)	73, 252
RsaNI	GTAC	2 cut(s)	72, 251
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	327, 353, 414
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	3 cut(s)	61, 235, 357
SchI	GAGTC	2 cut(s)	212, 313
ScrFI	CCNGG	2 cut(s)	164, 248
SetI	ASST	6 cut(s)	21, 252, 300, 378, 426, 443
SexAI	ACCWGGT	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	30, 182, 224, 415
SspI	AATATT	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	162, 246
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	24, 122, 261
TasI	AATT	4 cut(s)	30, 182, 224, 415
Tru1I	TTAA	3 cut(s)	327, 353, 414
Tru9I	TTAA	3 cut(s)	327, 353, 414
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.