Rmu_sc0002016.1_g000045

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002016.1
OG0013602
Physical Location & Seq
Reverse (-)
174616 .. 175252
637 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
atgtcttcttcctcctcctcctccgccctccgccgcctgatcgactccgactcccatcacctcccgtcccctaactacctctccctctgccgtgaccgcaccgtcgacgtcaccgcccgccaggactccatcaactggatcttgaaagtccactcccactaccgctttgccccgctcacggcgttcctctccgtcaactacttggaccgattcctctccacccgctccctcccgcaacagcatgggcggtggccgtttcagctgctctcagtggcgtgcttgtctttagcggccaagatggaggagcctaatgtcccctacatcgtcgacctccaaatcttcgagccaagattcgtcttcgaacccaaaacggtccaaagaatggagcttttggtcatgtccagtctcaactggagactccgctccgtcacacccttcgatttcctcccccatttcatctctaagctccccgcttcttcccctctcgaccttcttgaggcttcttctgatctggttctcaaaaccatacgaggtagaactacgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

181

Amino Acids

20.73

Weight (kDa)

9.34

Isoelectric Point (pI)

66.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 13 - 141 7.6e-31 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013602)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g03630 FvH4_2g03630 FvH4_2g03630 FvH4_2g03630
malus_domestica MD05G1102100.v1.1
prunus_persica Prupe.8G146700_v2.0.a1
pyrus_communis pycom10g09300
rosa_chinensis RchiOBHm_Chr6g0252631
rosa_laevigata RLG00000015079
rosa_multiflora Rmu_co8165678.1_g000001 Rmu_sc0002016.1_g000045 Rmu_sc0004969.1_g000001
rosa_roxburghii Rroxscaffold_7G00212510
rosa_rugosa Rorug05G0537200
rosa_samantha Rh6AG053900 Rh6CG046300 Rh6DG041900
rosa_wichuraiana Rw6G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 111
AccB7I CCANNNNNTGG 2 cut(s) 135, 382
AccBSI CCGCTC 3 cut(s) 175, 225, 423
AccI GTMKAC 2 cut(s) 105, 327
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 251, 291
AcyI GRCGYC 1 cut(s) 108
AfiI CCNNNNNNNGG 4 cut(s) 135, 178, 382, 496
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 3 cut(s) 262, 388, 466
AluI AGCT 3 cut(s) 262, 388, 466
Alw26I GTCTC 2 cut(s) 409, 410
AlwI GGATC 1 cut(s) 146
AoxI GGCC 2 cut(s) 251, 291
ApeKI GCWGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 205, 373
AsuHPI GGTGA 2 cut(s) 50, 103
AsuII TTCGAA 1 cut(s) 360
AvaII GGWCC 2 cut(s) 205, 373
BbsI GAAGAC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 249
BccI CCATC 3 cut(s) 63, 137, 292
BceAI ACGGC 3 cut(s) 75, 195, 238
BciT130I CCWGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 409, 410
BisI GCNGC 3 cut(s) 34, 263, 291
BlsI GCNGC 3 cut(s) 35, 264, 292
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 2 cut(s) 205, 373
BmgT120I GGNCC 2 cut(s) 205, 373
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 433
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 515
BsaAI YACGTR 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 108
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 65, 95
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 178, 382, 496
Bse1I ACTGG 3 cut(s) 140, 402, 416
BseBI CCWGG 1 cut(s) 122
BseLI CCNNNNNNNGG 4 cut(s) 135, 178, 382, 496
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 3 cut(s) 140, 402, 416
BseRI GAGGAG 4 cut(s) 4, 7, 10, 317
BseXI GCAGC 1 cut(s) 249
BshFI GGCC 2 cut(s) 253, 293
BslFI GGGAC 2 cut(s) 52, 299
BslI CCNNNNNNNGG 4 cut(s) 135, 178, 382, 496
BsmAI GTCTC 2 cut(s) 409, 410
BsmFI GGGAC 2 cut(s) 52, 299
BsnI GGCC 2 cut(s) 253, 293
Bsp119I TTCGAA 1 cut(s) 360
Bsp143I GATC 3 cut(s) 39, 138, 508
BspANI GGCC 2 cut(s) 253, 293
BspCNI CTCAG 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 360
BsrBI CCGCTC 3 cut(s) 175, 225, 423
BsrI ACTGG 3 cut(s) 140, 402, 416
BssMI GATC 3 cut(s) 39, 138, 508
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 103, 373
BstACI GRCGYC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 118, 277
BstDEI CTNAG 2 cut(s) 268, 462
BstENI CCTNNNNNAGG 1 cut(s) 494
BstKTI GATC 3 cut(s) 42, 141, 511
BstMAI GTCTC 2 cut(s) 409, 410
BstMBI GATC 3 cut(s) 39, 138, 508
BstMWI GCNNNNNNNGC 2 cut(s) 96, 259
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstSNI TACGTA 1 cut(s) 543
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 2 cut(s) 253, 293
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 2 cut(s) 118, 277
Cfr13I GGNCC 2 cut(s) 205, 373
CviAII CATG 2 cut(s) 242, 397
CviJI RGCY 8 cut(s) 253, 262, 293, 307, 346, 388, 466, 500
CviKI_1 RGCY 8 cut(s) 253, 262, 293, 307, 346, 388, 466, 500
DdeI CTNAG 2 cut(s) 268, 462
DpnI GATC 3 cut(s) 41, 140, 510
DpnII GATC 3 cut(s) 39, 138, 508
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 251, 291
EciI GGCGGA 2 cut(s) 13, 20
Eco105I TACGTA 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 205, 373
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 245, 400
FaiI YATR 3 cut(s) 243, 398, 527
FaqI GGGAC 2 cut(s) 52, 299
FatI CATG 2 cut(s) 241, 396
FauI CCCGC 5 cut(s) 125, 180, 230, 240, 478
FblI GTMKAC 2 cut(s) 105, 327
Fnu4HI GCNGC 3 cut(s) 34, 263, 291
Fsp4HI GCNGC 3 cut(s) 34, 263, 291
GluI GCNGC 3 cut(s) 34, 263, 291
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 2 cut(s) 253, 293
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 245, 400
HincII GTYRAC 3 cut(s) 106, 196, 328
HindII GTYRAC 3 cut(s) 106, 196, 328
HinfI GANTC 6 cut(s) 44, 50, 125, 210, 351, 417
HphI GGTGA 2 cut(s) 50, 103
Hpy166II GTNNAC 4 cut(s) 106, 151, 196, 328
Hpy188I TCNGA 2 cut(s) 49, 508
Hpy188III TCNNGA 3 cut(s) 142, 485, 494
Hpy8I GTNNAC 4 cut(s) 106, 151, 196, 328
Hpy99I CGWCG 3 cut(s) 107, 110, 329
HpyAV CCTTC 2 cut(s) 445, 500
HpyCH4III ACNGT 2 cut(s) 103, 373
HpyCH4IV ACGT 2 cut(s) 108, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 259
HpyF3I CTNAG 2 cut(s) 268, 462
HpySE526I ACGT 2 cut(s) 108, 542
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 245, 400
Kzo9I GATC 3 cut(s) 39, 138, 508
LmnI GCTCC 5 cut(s) 230, 304, 385, 428, 471
LpnPI CCDG 7 cut(s) 50, 107, 121, 134, 397, 415, 497
Lsp1109I GCAGC 1 cut(s) 249
MaeII ACGT 2 cut(s) 108, 542
MaeIII GTNAC 3 cut(s) 92, 109, 427
MalI GATC 3 cut(s) 41, 140, 510
MbiI CCGCTC 3 cut(s) 175, 225, 423
MboI GATC 3 cut(s) 39, 138, 508
MboII GAAGA 4 cut(s) 331, 349, 468, 495
MflI RGATCY 1 cut(s) 138
MlyI GAGTC 4 cut(s) 38, 44, 119, 411
MmeI TCCRAC 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 96, 259
NdeII GATC 3 cut(s) 39, 138, 508
NlaIII CATG 2 cut(s) 245, 400
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 3 cut(s) 92, 109, 427
NspV TTCGAA 1 cut(s) 360
PfeI GAWTC 2 cut(s) 210, 351
PflMI CCANNNNNTGG 2 cut(s) 135, 382
PkrI GCNGC 3 cut(s) 35, 264, 292
PleI GAGTC 4 cut(s) 38, 44, 119, 411
PpsI GAGTC 4 cut(s) 38, 44, 119, 411
Ppu21I YACGTR 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 2 cut(s) 205, 373
PsuI RGATCY 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 262
SalI GTCGAC 2 cut(s) 104, 326
SatI GCNGC 3 cut(s) 34, 263, 291
Sau3AI GATC 3 cut(s) 39, 138, 508
Sau96I GGNCC 2 cut(s) 205, 373
SchI GAGTC 4 cut(s) 38, 44, 119, 411
ScrFI CCNGG 1 cut(s) 122
SfuI TTCGAA 1 cut(s) 360
SgrDI CGTCGACG 1 cut(s) 104
SinI GGWCC 2 cut(s) 205, 373
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SnaBI TACGTA 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 103, 373
TaiI ACGT 2 cut(s) 111, 545
TaqI TCGA 7 cut(s) 42, 105, 327, 342, 360, 438, 486
TaqII GACCGA 1 cut(s) 222
TauI GCSGC 2 cut(s) 36, 293
TfiI GAWTC 2 cut(s) 210, 351
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 3 cut(s) 92, 109, 427
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 3 cut(s) 92, 109, 427
TspDTI ATGAA 1 cut(s) 445
TspGWI ACGGA 2 cut(s) 181, 415
TspRI CASTG 1 cut(s) 276
Van91I CCANNNNNTGG 2 cut(s) 135, 382
VpaK11BI GGWCC 2 cut(s) 205, 373
XagI CCTNNNNNAGG 1 cut(s) 494
XmiI GTMKAC 2 cut(s) 105, 327
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.