Rmu_sc0002045.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002045.1
OG0013780
Physical Location & Seq
Reverse (-)
112727 .. 113602
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002045.1_g000021.1.cds

Sequence Viewer

Length: 876 bp
atgccgtacttcaacccaatttctgaacccggaagacgtcgactgcgcgcaagggctgccgatgctgacctcggactaccgctgcacatatggcaatacattctaatgttcgttgccgcggatgacttgttcacaatacttgaatgcaggagtgtgtgcaggacattccgcacgctcattgatgattacaatgtgtattcctgcatcaacatgggtgatataggtggctggaacgacattcaattccctttggaagcggttcagggtcgccgcttatttgccctccaatgctttcgggcgactaatcccgaagccctgttccgccatgcagtccgaacaatgaggcgatcgggcgacattcccttggccatgcagttcctagaaatgggatgcagggagggagtcatattcagaagtaccacttttaggtggatttcctaccatggaccagcgttttatgtcttcagcatgttgcagataatatgtggaaatccggacgtccaaagggccgccgtatccaagttggtcagtcgactggactggaggcaaagcgggtggagtgcagagtcctgtcgagagttatgtgagtgggaggtgtttgtggctggaccggcgcaccctgatatcaggaatcacattccccctgacggtcccacccgtccagacagatgtagcgagtgcggtcaggagaatttcgtccgtccaatgggtgaaagaatgtggtatatcgacggcgacaccaacaaaggagagtgctgtgatagatgcaagtgcttggtcgacgcggtgttcttctcctgccgattatggaactgggcggcatcgagcgtggacagattgggacaacctcacagtgaggacgacgactacccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.5

Weight (kDa)

5.9

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 40, 501
AccI GTMKAC 3 cut(s) 40, 532, 780
AccII CGCG 3 cut(s) 48, 119, 785
AccIII TCCGGA 1 cut(s) 493
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 691
AcuI CTGAAG 1 cut(s) 448
AcyI GRCGYC 2 cut(s) 37, 498
AfaI GTAC 2 cut(s) 8, 418
AfiI CCNNNNNNNGG 4 cut(s) 385, 426, 647, 706
AgsI TTSAA 3 cut(s) 13, 143, 242
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 2 cut(s) 366, 507
ApeKI GCWGC 2 cut(s) 56, 82
ApoI RAATTY 1 cut(s) 691
Asp700I GAANNNNTTC 1 cut(s) 258
AspLEI GCGC 3 cut(s) 48, 50, 616
AspS9I GGNCC 4 cut(s) 446, 507, 608, 650
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 227, 722
AvaII GGWCC 3 cut(s) 446, 608, 650
BalI TGGCCA 1 cut(s) 368
BbsI GAAGAC 2 cut(s) 40, 454
BbvI GCAGC 2 cut(s) 43, 69
BceAI ACGGC 2 cut(s) 497, 748
BciVI GTATCC 1 cut(s) 526
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 380
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 6 cut(s) 57, 83, 117, 271, 510, 819
BlsI GCNGC 6 cut(s) 58, 84, 118, 272, 511, 820
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 3 cut(s) 446, 608, 650
BmgT120I GGNCC 4 cut(s) 446, 507, 608, 650
BmiI GGNNCC 1 cut(s) 652
BmrFI CCNGG 1 cut(s) 30
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 5 cut(s) 52, 213, 380, 755, 830
BmuI ACTGGG 1 cut(s) 823
BpiI GAAGAC 2 cut(s) 40, 454
BpmI CTGGAG 1 cut(s) 562
BpuMI CCSGG 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 37, 498
BsaJI CCNNGG 4 cut(s) 70, 117, 363, 442
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 4 cut(s) 385, 426, 647, 706
Bse118I RCCGGY 1 cut(s) 610
Bse1I ACTGG 3 cut(s) 540, 545, 818
BseAI TCCGGA 1 cut(s) 493
BseDI CCNNGG 4 cut(s) 70, 117, 363, 442
BseGI GGATG 2 cut(s) 127, 395
BseLI CCNNNNNNNGG 4 cut(s) 385, 426, 647, 706
BseNI ACTGG 3 cut(s) 540, 545, 818
BsePI GCGCGC 1 cut(s) 46
BseXI GCAGC 2 cut(s) 43, 69
BsgI GTGCAG 3 cut(s) 68, 178, 582
Bsh1236I CGCG 3 cut(s) 48, 119, 785
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 2 cut(s) 368, 509
BsiEI CGRYCG 1 cut(s) 350
BsiSI CCGG 3 cut(s) 30, 494, 611
BslFI GGGAC 2 cut(s) 636, 855
BslI CCNNNNNNNGG 4 cut(s) 385, 426, 647, 706
BsmFI GGGAC 2 cut(s) 636, 855
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 368, 509
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 442
BspANI GGCC 2 cut(s) 368, 509
BspEI TCCGGA 1 cut(s) 493
BspFNI CGCG 3 cut(s) 48, 119, 785
BspLI GGNNCC 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 610
BsrI ACTGG 3 cut(s) 540, 545, 818
BssAI RCCGGY 1 cut(s) 610
BssECI CCNNGG 4 cut(s) 70, 117, 363, 442
BssHII GCGCGC 1 cut(s) 46
BssMI GATC 1 cut(s) 347
BssNI GRCGYC 2 cut(s) 37, 498
BssT1I CCWWGG 2 cut(s) 363, 442
Bst4CI ACNGT 2 cut(s) 650, 854
BstACI GRCGYC 2 cut(s) 37, 498
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 48, 173
BstDSI CCRYGG 2 cut(s) 117, 442
BstF5I GGATG 2 cut(s) 127, 395
BstFNI CGCG 3 cut(s) 48, 119, 785
BstHHI GCGC 3 cut(s) 48, 50, 616
BstKTI GATC 1 cut(s) 350
BstMBI GATC 1 cut(s) 347
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 4 cut(s) 56, 62, 91, 611
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 28
BstUI CGCG 3 cut(s) 48, 119, 785
BstV1I GCAGC 2 cut(s) 43, 69
BstV2I GAAGAC 2 cut(s) 40, 454
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 2 cut(s) 368, 509
BtgI CCRYGG 2 cut(s) 117, 442
BtsCI GGATG 2 cut(s) 127, 395
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 2 cut(s) 48, 173
CfoI GCGC 3 cut(s) 48, 50, 616
Cfr10I RCCGGY 1 cut(s) 610
Cfr13I GGNCC 4 cut(s) 446, 507, 608, 650
Cfr42I CCGCGG 1 cut(s) 120
CseI GACGC 1 cut(s) 791
Csp6I GTAC 2 cut(s) 7, 417
CspCI CAANNNNNGTGG 2 cut(s) 536, 571
CviAII CATG 5 cut(s) 211, 326, 370, 443, 469
CviJI RGCY 6 cut(s) 56, 228, 314, 368, 509, 605
CviKI_1 RGCY 6 cut(s) 56, 228, 314, 368, 509, 605
CviQI GTAC 2 cut(s) 7, 417
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 366
EciI GGCGGA 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 363, 442
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 3 cut(s) 446, 608, 650
Eco57I CTGAAG 1 cut(s) 448
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 363, 442
ErhI CCWWGG 2 cut(s) 363, 442
FaeI CATG 5 cut(s) 214, 329, 373, 446, 472
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 2 cut(s) 636, 855
FatI CATG 5 cut(s) 210, 325, 369, 442, 468
FauI CCCGC 1 cut(s) 545
FauNDI CATATG 1 cut(s) 89
FblI GTMKAC 3 cut(s) 40, 532, 780
Fnu4HI GCNGC 6 cut(s) 57, 83, 117, 271, 510, 819
FokI GGATG 2 cut(s) 134, 402
Fsp4HI GCNGC 6 cut(s) 57, 83, 117, 271, 510, 819
FspBI CTAG 1 cut(s) 380
GlaI GCGC 3 cut(s) 47, 49, 615
GluI GCNGC 6 cut(s) 57, 83, 117, 271, 510, 819
GsuI CTGGAG 1 cut(s) 562
HaeIII GGCC 2 cut(s) 368, 509
HapII CCGG 3 cut(s) 30, 494, 611
HgaI GACGC 1 cut(s) 791
HhaI GCGC 3 cut(s) 48, 50, 616
Hin1I GRCGYC 2 cut(s) 37, 498
Hin1II CATG 5 cut(s) 214, 329, 373, 446, 472
Hin6I GCGC 3 cut(s) 46, 48, 614
HinP1I GCGC 3 cut(s) 46, 48, 614
HincII GTYRAC 3 cut(s) 41, 533, 781
HindII GTYRAC 3 cut(s) 41, 533, 781
HinfI GANTC 3 cut(s) 402, 566, 631
HpaII CCGG 3 cut(s) 30, 494, 611
HphI GGTGA 2 cut(s) 227, 722
Hpy166II GTNNAC 5 cut(s) 41, 132, 533, 781, 832
Hpy188I TCNGA 4 cut(s) 25, 74, 335, 413
Hpy188III TCNNGA 6 cut(s) 308, 494, 575, 628, 662, 686
Hpy8I GTNNAC 5 cut(s) 41, 132, 533, 781, 832
Hpy99I CGWCG 4 cut(s) 42, 734, 785, 866
HpyCH4III ACNGT 2 cut(s) 650, 854
HpyCH4IV ACGT 2 cut(s) 37, 498
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 62, 91, 611
HpySE526I ACGT 2 cut(s) 37, 498
Hsp92I GRCGYC 2 cut(s) 37, 498
Hsp92II CATG 5 cut(s) 214, 329, 373, 446, 472
HspAI GCGC 3 cut(s) 46, 48, 614
Kpn2I TCCGGA 1 cut(s) 493
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 1 cut(s) 347
Lsp1109I GCAGC 2 cut(s) 43, 69
LweI GCATC 5 cut(s) 52, 213, 380, 755, 830
MaeI CTAG 1 cut(s) 380
MaeII ACGT 2 cut(s) 37, 498
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 3 cut(s) 45, 454, 784
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 3 cut(s) 18, 242, 691
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 2 cut(s) 411, 575
MnlI CCTC 8 cut(s) 80, 293, 336, 391, 537, 586, 850, 858
Mox20I TGGCCA 1 cut(s) 368
MroI TCCGGA 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 368
MseI TTAA 1 cut(s) 874
MslI CAYNNNNRTG 2 cut(s) 104, 209
Msp20I TGGCCA 1 cut(s) 368
MspA1I CMGCKG 2 cut(s) 82, 119
MspI CCGG 3 cut(s) 30, 494, 611
MspR9I CCNGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 149
MvnI CGCG 3 cut(s) 48, 119, 785
MwoI GCNNNNNNNGC 4 cut(s) 56, 62, 91, 611
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 442
NdeI CATATG 1 cut(s) 89
NdeII GATC 1 cut(s) 347
NlaIII CATG 5 cut(s) 214, 329, 373, 446, 472
NlaIV GGNNCC 1 cut(s) 652
NspI RCATGY 1 cut(s) 472
PauI GCGCGC 1 cut(s) 46
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 631
PkrI GCNGC 6 cut(s) 58, 84, 118, 272, 511, 820
Ple19I CGATCG 1 cut(s) 350
PleI GAGTC 2 cut(s) 410, 574
PpsI GAGTC 2 cut(s) 410, 574
PspN4I GGNNCC 1 cut(s) 652
PspPI GGNCC 4 cut(s) 446, 507, 608, 650
PteI GCGCGC 1 cut(s) 46
PvuI CGATCG 1 cut(s) 350
RsaI GTAC 2 cut(s) 8, 418
RsaNI GTAC 2 cut(s) 7, 417
RseI CAYNNNNRTG 2 cut(s) 104, 209
SacII CCGCGG 1 cut(s) 120
SalI GTCGAC 3 cut(s) 39, 531, 779
SaqAI TTAA 1 cut(s) 874
SatI GCNGC 6 cut(s) 57, 83, 117, 271, 510, 819
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 4 cut(s) 446, 507, 608, 650
SchI GAGTC 2 cut(s) 411, 575
ScrFI CCNGG 1 cut(s) 30
SetI ASST 7 cut(s) 40, 72, 226, 431, 501, 597, 850
SfaNI GCATC 5 cut(s) 52, 213, 380, 755, 830
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 3 cut(s) 446, 608, 650
SmiMI CAYNNNNRTG 2 cut(s) 104, 209
Sse9I AATT 3 cut(s) 18, 242, 691
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 2 cut(s) 363, 442
TaaI ACNGT 2 cut(s) 650, 854
TaiI ACGT 2 cut(s) 40, 501
TaqI TCGA 6 cut(s) 40, 532, 574, 729, 780, 824
TasI AATT 3 cut(s) 18, 242, 691
TauI GCSGC 4 cut(s) 119, 273, 512, 821
TfiI GAWTC 1 cut(s) 631
Tru1I TTAA 1 cut(s) 874
Tru9I TTAA 1 cut(s) 874
TscAI CASTG 1 cut(s) 859
TseI GCWGC 2 cut(s) 56, 82
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 1 cut(s) 859
VpaK11BI GGWCC 3 cut(s) 446, 608, 650
XapI RAATTY 1 cut(s) 691
XceI RCATGY 1 cut(s) 472
XmiI GTMKAC 3 cut(s) 40, 532, 780
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 380
ZraI GACGTC 2 cut(s) 38, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.