Rh7CG371200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013780
Physical Location & Seq
Forward (+)
46612381 .. 46612911
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG371200.1

Sequence Viewer

Length: 531 bp
ATGCCCTACTTTAACCCATTTTCTAAACCCGGAAGACGTCGACTGCATGCAAGGGCTGATGATGCTGACCTCGGACTACCGCTACACATATGGCAATACATTCTAATGTTCGTTGGCGCGGATGACTTGTTCAGAATACTGGACTGCAGGACATTTCGCACGCTCATTGATGATTACAATGTGTATTCATGCATCAACATGGCTGATATATGTGAGTGGAACGACATTCAATTTCCCTTGGAAGCAGTTCAGGGTCGCCGCTTATTTGCCCTCCGATGCTTTCGGGCGAACAATCCAGAAGTGCTGTTCTGCCATGCAGTCCGAACCATAAGGCGATCGGGCGACATTCCATTAGCCATGCAGTTCCTAGAAATGGCATGCGGGGAGGGTGTAATCTTCAGAAGTACAACTTTTAGGTGGATTGGCTACCATGAAATGGCGTTTTATGTCTTGAGCATGTTGCAGATAATATGTGGAAATCCGGACGTCCAAAGGGCCGCCGTAGACAAGATGGTGAGTCGCCTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.51

Weight (kDa)

7.6

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 40, 489
AccB7I CCANNNNNTGG 1 cut(s) 436
AccI GTMKAC 2 cut(s) 40, 504
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 5 cut(s) 80, 119, 259, 381, 498
AcuI CTGAAG 1 cut(s) 382
AcyI GRCGYC 2 cut(s) 37, 486
AfaI GTAC 1 cut(s) 406
AfiI CCNNNNNNNGG 2 cut(s) 373, 436
AgsI TTSAA 1 cut(s) 230
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 1 cut(s) 495
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 495
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 40
BccI CCATC 1 cut(s) 505
BceAI ACGGC 1 cut(s) 485
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 2 cut(s) 368, 529
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 2 cut(s) 259, 498
BlsI GCNGC 2 cut(s) 260, 499
Bme1390I CCNGG 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 495
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 3 cut(s) 52, 201, 266
BpiI GAAGAC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 472
BpuMI CCSGG 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 37, 486
BsaJI CCNNGG 2 cut(s) 70, 237
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 436
Bse1I ACTGG 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 481
BseDI CCNNGG 2 cut(s) 70, 237
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 373, 436
BseNI ACTGG 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 338
BsiSI CCGG 2 cut(s) 30, 482
BslI CCNNNNNNNGG 2 cut(s) 373, 436
BsnI GGCC 1 cut(s) 497
Bsp13I TCCGGA 1 cut(s) 481
Bsp143I GATC 1 cut(s) 335
BspACI CCGC 5 cut(s) 80, 119, 259, 381, 498
BspANI GGCC 1 cut(s) 497
BspEI TCCGGA 1 cut(s) 481
BspFNI CGCG 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 149
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 70, 237
BssMI GATC 1 cut(s) 335
BssNI GRCGYC 2 cut(s) 37, 486
BssT1I CCWWGG 1 cut(s) 237
BstACI GRCGYC 2 cut(s) 37, 486
BstC8I GCNNGC 3 cut(s) 48, 161, 379
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 1 cut(s) 338
BstMBI GATC 1 cut(s) 335
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNSI RCATGY 3 cut(s) 50, 381, 460
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 145
BstUI CGCG 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 497
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 48, 161, 379
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 495
Csp6I GTAC 1 cut(s) 405
CviAII CATG 8 cut(s) 47, 189, 199, 314, 358, 378, 431, 457
CviJI RGCY 5 cut(s) 56, 203, 356, 426, 497
CviKI_1 RGCY 5 cut(s) 56, 203, 356, 426, 497
CviQI GTAC 1 cut(s) 405
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 8 cut(s) 50, 192, 202, 317, 361, 381, 434, 460
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FatI CATG 8 cut(s) 46, 188, 198, 313, 357, 377, 430, 456
FauI CCCGC 1 cut(s) 374
FauNDI CATATG 1 cut(s) 89
FblI GTMKAC 2 cut(s) 40, 504
Fnu4HI GCNGC 2 cut(s) 259, 498
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 259, 498
FspBI CTAG 2 cut(s) 368, 529
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 259, 498
HaeIII GGCC 1 cut(s) 497
HapII CCGG 2 cut(s) 30, 482
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 2 cut(s) 37, 486
Hin1II CATG 8 cut(s) 50, 192, 202, 317, 361, 381, 434, 460
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 41
HindII GTYRAC 1 cut(s) 41
HinfI GANTC 1 cut(s) 517
HpaII CCGG 2 cut(s) 30, 482
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 2 cut(s) 41, 505
Hpy188I TCNGA 5 cut(s) 74, 134, 275, 323, 401
Hpy188III TCNNGA 3 cut(s) 296, 451, 482
Hpy8I GTNNAC 2 cut(s) 41, 505
Hpy99I CGWCG 1 cut(s) 42
HpyCH4IV ACGT 2 cut(s) 37, 486
HpyCH4V TGCA 7 cut(s) 46, 50, 147, 192, 317, 361, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpySE526I ACGT 2 cut(s) 37, 486
Hsp92I GRCGYC 2 cut(s) 37, 486
Hsp92II CATG 8 cut(s) 50, 192, 202, 317, 361, 381, 434, 460
HspAI GCGC 1 cut(s) 117
Kpn2I TCCGGA 1 cut(s) 481
Kzo9I GATC 1 cut(s) 335
LpnPI CCDG 6 cut(s) 43, 125, 133, 236, 309, 495
LweI GCATC 3 cut(s) 52, 201, 266
MaeI CTAG 2 cut(s) 368, 529
MaeII ACGT 2 cut(s) 37, 486
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 2 cut(s) 45, 388
MluCI AATT 1 cut(s) 230
MlyI GAGTC 1 cut(s) 526
MnlI CCTC 3 cut(s) 80, 281, 379
Mph1103I ATGCAT 1 cut(s) 194
MroI TCCGGA 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 2 cut(s) 12, 525
MslI CAYNNNNRTG 2 cut(s) 104, 197
MspI CCGG 2 cut(s) 30, 482
MspR9I CCNGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 89
NdeII GATC 1 cut(s) 335
NlaIII CATG 8 cut(s) 50, 192, 202, 317, 361, 381, 434, 460
NsiI ATGCAT 1 cut(s) 194
NspI RCATGY 3 cut(s) 50, 381, 460
PaeI GCATGC 2 cut(s) 50, 381
PdmI GAANNNNTTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 436
PkrI GCNGC 2 cut(s) 260, 499
Ple19I CGATCG 1 cut(s) 338
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PspPI GGNCC 1 cut(s) 495
PstI CTGCAG 1 cut(s) 149
PvuI CGATCG 1 cut(s) 338
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 2 cut(s) 104, 197
SalI GTCGAC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 12, 525
SatI GCNGC 2 cut(s) 259, 498
Sau3AI GATC 1 cut(s) 335
Sau96I GGNCC 1 cut(s) 495
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 1 cut(s) 30
SetI ASST 4 cut(s) 40, 72, 419, 489
SfaNI GCATC 3 cut(s) 52, 201, 266
SfcI CTRYAG 1 cut(s) 145
SmiMI CAYNNNNRTG 2 cut(s) 104, 197
SmlI CTYRAG 1 cut(s) 451
SmoI CTYRAG 1 cut(s) 451
SphI GCATGC 2 cut(s) 50, 381
Sse9I AATT 1 cut(s) 230
SsiI CCGC 5 cut(s) 80, 119, 259, 381, 498
SspMI CTAG 2 cut(s) 368, 529
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 2 cut(s) 40, 489
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 230
TatI WGTACW 1 cut(s) 404
TauI GCSGC 2 cut(s) 261, 500
Tru1I TTAA 2 cut(s) 12, 525
Tru9I TTAA 2 cut(s) 12, 525
TspDTI ATGAA 2 cut(s) 177, 447
Van91I CCANNNNNTGG 1 cut(s) 436
XceI RCATGY 3 cut(s) 50, 381, 460
XmiI GTMKAC 2 cut(s) 40, 504
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 2 cut(s) 368, 529
ZraI GACGTC 2 cut(s) 38, 487
Zsp2I ATGCAT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.