Rh6CG420200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013780
Physical Location & Seq
Forward (+)
60315314 .. 60315925
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG420200.1

Sequence Viewer

Length: 612 bp
ATGCCATACTTCAAGCCACTATCTCTGCCTGGAAAGCGCCAAAGACTCAACCCGAGAGCGACCAATGACTTCACACTACCTCTTGTCATATGGCAATATATTCTTCAGTTTGTTGCCGTGGATGACCTATACACAATTCTACAGTGTAGGAGTGTTTGTAAGACTTTTATGAGGCTCATTGATGACTTCCATATCTATTCATGCATAGACATGGCGGTCATATGTGGTCCGTGGGATATTGACATTCGTGAATCATCAAAAGTGACGCGACATCGACTGTTTGCTAAACAATGCTTGGAGGCGAATAATCCGGAAGCACTGTTCCGTCAGGCATTCCGAACCATGAAGAAGTCCGGCAACATTCCGATGGCAACCCAATACTTAGAAATGGCATGCAGGGGGGCACAATCTTTAAAAGTTGGTATAAGTGGATTGACTATCATGACATTGCGTATTATGCGTTGTGCATGTTGCAGATCATCAGGGGAAACCAGGAGGTCCGAAATAAGACAATCAACAACATGGTTGGTAGGTTGGATTGGAGGAAAAGTGGTTGGGAAGTACAATATTGTCGACATGAGGCTCACAGATGGTTGGATATTGGGCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.23

Weight (kDa)

9.52

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 26 - 66 8.6e-06 F-box domain
TPR_27 PF23310 90 - 133 4e-07 Plant tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 573
AccII CGCG 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 310
AciI CCGC 2 cut(s) 215, 606
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 1 cut(s) 563
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 2 cut(s) 28, 491
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
Ama87I CYCGRG 1 cut(s) 52
Aor13HI TCCGGA 1 cut(s) 310
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 227, 498
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 2 cut(s) 227, 498
BaeGI GKGCMC 1 cut(s) 406
BccI CCATC 2 cut(s) 361, 584
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 30, 493
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 40
BisI GCNGC 1 cut(s) 607
BlsI GCNGC 1 cut(s) 608
Bme1390I CCNGG 2 cut(s) 30, 493
Bme18I GGWCC 2 cut(s) 227, 498
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 227, 498
BmrFI CCNGG 2 cut(s) 30, 493
BsaJI CCNNGG 2 cut(s) 117, 230
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 534, 564
Bse3DI GCAATG 1 cut(s) 446
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 2 cut(s) 30, 493
BseDI CCNNGG 2 cut(s) 117, 230
BseGI GGATG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 2 cut(s) 311, 354
BsmI GAATGC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 406
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 1 cut(s) 476
BspACI CCGC 2 cut(s) 215, 606
BspEI TCCGGA 1 cut(s) 310
BspFNI CGCG 1 cut(s) 268
BspHI TCATGA 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 117, 230
BssMI GATC 1 cut(s) 476
Bst2UI CCWGG 2 cut(s) 30, 493
Bst4CI ACNGT 3 cut(s) 144, 279, 321
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 382
BstDSI CCRYGG 2 cut(s) 117, 230
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 1 cut(s) 479
BstMBI GATC 1 cut(s) 476
BstMWI GCNNNNNNNGC 2 cut(s) 34, 457
BstNI CCWGG 2 cut(s) 30, 493
BstNSI RCATGY 2 cut(s) 396, 471
BstSCI CCNGG 2 cut(s) 28, 491
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 268
BtgI CCRYGG 2 cut(s) 117, 230
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 149, 317
Cac8I GCNNGC 1 cut(s) 394
CciI TCATGA 1 cut(s) 441
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 227, 498
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 562
CviAII CATG 8 cut(s) 201, 211, 343, 393, 442, 468, 522, 577
CviJI RGCY 4 cut(s) 16, 175, 583, 609
CviKI_1 RGCY 4 cut(s) 16, 175, 583, 609
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 1 cut(s) 382
DpnI GATC 1 cut(s) 478
DpnII GATC 1 cut(s) 476
DraI TTTAAA 1 cut(s) 414
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 227, 498
Eco57I CTGAAG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 28, 491
EcoT22I ATGCAT 1 cut(s) 206
FaeI CATG 8 cut(s) 204, 214, 346, 396, 445, 471, 525, 580
FatI CATG 8 cut(s) 200, 210, 342, 392, 441, 467, 521, 576
FauNDI CATATG 2 cut(s) 89, 221
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 1 cut(s) 607
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 607
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 607
HaeII RGCGCY 1 cut(s) 40
HapII CCGG 2 cut(s) 311, 354
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 39
Hin1II CATG 8 cut(s) 204, 214, 346, 396, 445, 471, 525, 580
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 2 cut(s) 45, 251
HpaII CCGG 2 cut(s) 311, 354
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 3 cut(s) 338, 366, 502
Hpy188III TCNNGA 3 cut(s) 248, 311, 442
Hpy8I GTNNAC 1 cut(s) 574
HpyCH4III ACNGT 3 cut(s) 144, 279, 321
HpyCH4V TGCA 4 cut(s) 204, 396, 467, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 457
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 8 cut(s) 204, 214, 346, 396, 445, 471, 525, 580
HspAI GCGC 1 cut(s) 37
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 476
LpnPI CCDG 9 cut(s) 15, 42, 314, 324, 367, 382, 468, 478, 505
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 478
MboI GATC 1 cut(s) 476
MboII GAAGA 2 cut(s) 95, 358
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 2 cut(s) 515, 575
MnlI CCTC 6 cut(s) 90, 165, 292, 489, 536, 573
Mph1103I ATGCAT 1 cut(s) 206
MroI TCCGGA 1 cut(s) 310
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 2 cut(s) 209, 365
MspI CCGG 2 cut(s) 311, 354
MspR9I CCNGG 2 cut(s) 30, 493
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 2 cut(s) 30, 493
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 34, 457
NdeI CATATG 2 cut(s) 89, 221
NdeII GATC 1 cut(s) 476
NlaIII CATG 8 cut(s) 204, 214, 346, 396, 445, 471, 525, 580
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 206
NspI RCATGY 2 cut(s) 396, 471
PaeI GCATGC 1 cut(s) 396
PagI TCATGA 1 cut(s) 441
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 608
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 28, 491
PspGI CCWGG 2 cut(s) 28, 491
PspPI GGNCC 2 cut(s) 227, 498
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
RseI CAYNNNNRTG 2 cut(s) 209, 365
SalI GTCGAC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 607
Sau3AI GATC 1 cut(s) 476
Sau96I GGNCC 2 cut(s) 227, 498
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 30, 493
SduI GDGCHC 1 cut(s) 406
SetI ASST 4 cut(s) 82, 129, 500, 535
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 2 cut(s) 227, 498
SmiMI CAYNNNNRTG 2 cut(s) 209, 365
SphI GCATGC 1 cut(s) 396
Sse9I AATT 1 cut(s) 135
SsiI CCGC 2 cut(s) 215, 606
SspI AATATT 1 cut(s) 568
StyD4I CCNGG 2 cut(s) 28, 491
TaaI ACNGT 3 cut(s) 144, 279, 321
TaqI TCGA 2 cut(s) 274, 573
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 609
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 2 cut(s) 149, 324
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 189, 359
TspGWI ACGGA 2 cut(s) 219, 314
TspRI CASTG 2 cut(s) 149, 324
VpaK11BI GGWCC 2 cut(s) 227, 498
XceI RCATGY 2 cut(s) 396, 471
XmiI GTMKAC 1 cut(s) 573
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.