Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013780

Physical Location & Seq

Genomic Coordinates Reverse (-)

27362810 .. 27363346

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGAAGTCCGGCAACATTCCCATGGCAACCCAATACTTACAAATGGCATGCAGGGGGGGCACAATCTTTAAAGGTTGGTATAAGTGGATTGACTACCACGACATTGCGTATTATGTGTTGTGCATGTTGCAGATCATCAGGGGAAACCAGGAGGTCCGAAATAAGACACTCAAAGACATGGTTGGTCGGTTGGATTGGAGGAAAAGTGGCTGGGAAGTACAATATTGTCGACATGAGGCTCACAGATGGTTGGATATTGGCCAGCCGACGCACTCCGATGTCTTGAAACACATCCCTACCGACTACTCATTCCTTCCGGAACGATGTCAGGGTTGCGGTGAACATTCGTTCCACCGTCCGTTCTTACATAACATGTGGTTAGTTAACTCTGATAGGAATATGGGTGAAACTTGTGATGTTTGCAAGTGCTACATCGAGGCCTCAAATTTCTACTACAAGCTACGGAATTCGGCATCCTCATTCCAACACCTGCTCGATTGGTATGCATTCATTGACGACATTCCCCACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

21.19

Weight (kDa)

8.1

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013780)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000279.1_g000049 Rmu_sc0002045.1_g000021 Rmu_sc0005712.1_g000021
rosa_roxburghii	Rroxscaffold_1G00031850
rosa_samantha	Rh2AG354200 Rh2AG642200 Rh3AG246500 Rh3BG331600 Rh3DG304700 Rh4AG249300 Rh4BG254700 Rh5CG497500 Rh5DG239300 Rh5DG239400 Rh6CG420200 Rh7AG353600 Rh7CG371200
rosa_wichuraiana	Rw2G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	501
AccI	GTMKAC	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	2 cut(s)	448, 469
AfaI	GTAC	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	2 cut(s)	262, 441
ApoI	RAATTY	2 cut(s)	448, 469
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	353, 419
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	264
BccI	CCATC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse3DI	GCAATG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	294, 476
BseMI	GCAATG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	65
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	264, 443
BsiSI	CCGG	2 cut(s)	12, 320
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	264, 443
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	2 cut(s)	264, 443
BspEI	TCCGGA	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	52, 266
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	294, 476
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	3 cut(s)	54, 130, 379
BstSCI	CCNGG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	264, 443
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	294, 476
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	52, 266
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	6 cut(s)	25, 51, 127, 181, 236, 376
CviJI	RGCY	6 cut(s)	213, 242, 264, 268, 443, 463
CviKI_1	RGCY	6 cut(s)	213, 242, 264, 268, 443, 463
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	6 cut(s)	28, 54, 130, 184, 239, 379
FatI	CATG	6 cut(s)	24, 50, 126, 180, 235, 375
FblI	GTMKAC	1 cut(s)	232
FokI	GGATG	2 cut(s)	281, 463
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	264, 443
HapII	CCGG	2 cut(s)	12, 320
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	6 cut(s)	28, 54, 130, 184, 239, 379
HincII	GTYRAC	2 cut(s)	233, 388
HindII	GTYRAC	2 cut(s)	233, 388
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	12, 320
HphI	GGTGA	2 cut(s)	353, 419
Hpy166II	GTNNAC	3 cut(s)	233, 344, 388
Hpy188I	TCNGA	4 cut(s)	161, 280, 394, 536
Hpy188III	TCNNGA	2 cut(s)	286, 320
Hpy8I	GTNNAC	3 cut(s)	233, 344, 388
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	5 cut(s)	54, 126, 133, 426, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
Hsp92II	CATG	6 cut(s)	28, 54, 130, 184, 239, 379
Kpn2I	TCCGGA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	135
LweI	GCATC	1 cut(s)	485
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	2 cut(s)	448, 469
MluNI	TGGCCA	1 cut(s)	264
MmeI	TCCRAC	3 cut(s)	174, 234, 511
MnlI	CCTC	6 cut(s)	148, 195, 232, 433, 454, 490
Mox20I	TGGCCA	1 cut(s)	264
Mph1103I	ATGCAT	1 cut(s)	511
MroI	TCCGGA	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	2 cut(s)	72, 387
MslI	CAYNNNNRTG	2 cut(s)	23, 279
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	2 cut(s)	12, 320
MspR9I	CCNGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	6 cut(s)	28, 54, 130, 184, 239, 379
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	3 cut(s)	54, 130, 379
PaeI	GCATGC	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	443
PciI	ACATGT	1 cut(s)	375
PctI	GAATGC	1 cut(s)	509
PscI	ACATGT	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	23, 279
SalI	GTCGAC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	72, 387
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	4 cut(s)	79, 159, 465, 495
SfaNI	GCATC	1 cut(s)	485
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	23, 279
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	2 cut(s)	448, 469
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	1 cut(s)	339
SspI	AATATT	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	3 cut(s)	232, 438, 498
TasI	AATT	2 cut(s)	448, 469
TatI	WGTACW	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	72, 387
Tru9I	TTAA	2 cut(s)	72, 387
TspDTI	ATGAA	2 cut(s)	17, 502
TspGWI	ACGGA	2 cut(s)	351, 481
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	448, 469
XceI	RCATGY	3 cut(s)	54, 130, 379
XmiI	GTMKAC	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.