Rh3DG304700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013780
Physical Location & Seq
Reverse (-)
32334463 .. 32334879
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG304700.1

Sequence Viewer

Length: 417 bp
ATGCCATACTTCAAGCCACTGTCTCTGCCTGGAAGGCGCCGAAGACTCAACCCGAGAGCGGCCAATGACTTCACACTGCCTCTCGTCATATGGCAATATATTCTTCAGTTTGTTGCCGCCGATGACCTATACACAATTCTACAGTGTAGGAGTGTTTGTAAGACTTTTATGAGACTCATTGATGACTTCCATGTCTATTCATGCGTAGACATGGCGGGCATATGTGGTCCTTGGGATATTGACATTTGTGAATCATCGAAAGTGACGCGACGTCGCCTGTTTGCTAAGCAATGCTTGGAGGCGAATAATCCGAAAGCATTGTTCCGTCAGGCATTCCGAACCATGAAGAAGTCCGGCAACATTTTGATGGCAACCCAATACTTACAAATGGCATGCAGGGGGGGGCACAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.99

Weight (kDa)

9.59

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 26 - 66 4.4e-06 F-box domain
TPR_27 PF23310 89 - 136 1.2e-07 Plant tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AatII GACGTC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 36
AccBSI CCGCTC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 268
AciI CCGC 3 cut(s) 59, 117, 215
AcoI YGGCCR 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 2 cut(s) 37, 271
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 13
AhdI GACNNNNNGTC 1 cut(s) 270
AjnI CCWGG 1 cut(s) 28
Alw26I GTCTC 2 cut(s) 27, 166
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 408
BanI GGYRCC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 49
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 30
BcoDI GTCTC 2 cut(s) 27, 166
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 40
BglI GCCNNNNNGGC 1 cut(s) 34
BisI GCNGC 2 cut(s) 60, 117
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 2 cut(s) 61, 118
Bme1390I CCNGG 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 227
BmeRI GACNNNNNGTC 1 cut(s) 270
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 49
Bpu1102I GCTNAGC 1 cut(s) 285
BsaHI GRCGYC 2 cut(s) 37, 271
BsaJI CCNNGG 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMI GCAATG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 27, 166
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 408
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 3 cut(s) 59, 117, 215
BspANI GGCC 1 cut(s) 62
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 36
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 230
BssNI GRCGYC 2 cut(s) 37, 271
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 21, 144
BstACI GRCGYC 2 cut(s) 37, 271
BstC8I GCNNGC 2 cut(s) 217, 394
BstDEI CTNAG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 27, 166
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 30
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 408
BstUI CGCG 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 3 cut(s) 17, 74, 149
Cac8I GCNNGC 2 cut(s) 217, 394
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 227
CseI GACGC 1 cut(s) 274
CviAII CATG 5 cut(s) 191, 201, 211, 343, 393
CviJI RGCY 2 cut(s) 16, 62
CviKI_1 RGCY 2 cut(s) 16, 62
DdeI CTNAG 1 cut(s) 285
DinI GGCGCC 1 cut(s) 38
DrdI GACNNNNNNGTC 1 cut(s) 191
DriI GACNNNNNGTC 1 cut(s) 270
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 230
EgeI GGCGCC 1 cut(s) 38
EheI GGCGCC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 5 cut(s) 194, 204, 214, 346, 396
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 5 cut(s) 190, 200, 210, 342, 392
FauI CCCGC 1 cut(s) 208
FauNDI CATATG 2 cut(s) 89, 221
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 60, 117
Fsp4HI GCNGC 2 cut(s) 60, 117
GlaI GCGC 1 cut(s) 38
GluI GCNGC 2 cut(s) 60, 117
HaeII RGCGCY 1 cut(s) 40
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 274
HhaI GCGC 1 cut(s) 39
Hin1I GRCGYC 2 cut(s) 37, 271
Hin1II CATG 5 cut(s) 194, 204, 214, 346, 396
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 3 cut(s) 45, 174, 251
HpaII CCGG 1 cut(s) 354
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 312, 338
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 2 cut(s) 273, 276
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 2 cut(s) 21, 144
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 1 cut(s) 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 271
Hsp92I GRCGYC 2 cut(s) 37, 271
Hsp92II CATG 5 cut(s) 194, 204, 214, 346, 396
HspAI GCGC 1 cut(s) 37
KasI GGCGCC 1 cut(s) 36
LpnPI CCDG 6 cut(s) 15, 42, 290, 314, 367, 382
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 262
MbiI CCGCTC 1 cut(s) 59
MboII GAAGA 3 cut(s) 54, 95, 358
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 1 cut(s) 135
Mly113I GGCGCC 1 cut(s) 37
MlyI GAGTC 2 cut(s) 39, 168
MnlI CCTC 2 cut(s) 90, 292
MseI TTAA 1 cut(s) 415
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 1 cut(s) 34
NarI GGCGCC 1 cut(s) 37
NdeI CATATG 2 cut(s) 89, 221
NlaIII CATG 5 cut(s) 194, 204, 214, 346, 396
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 396
PaeI GCATGC 1 cut(s) 396
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 2 cut(s) 61, 118
PleI GAGTC 2 cut(s) 39, 168
PluTI GGCGCC 1 cut(s) 40
PpsI GAGTC 2 cut(s) 39, 168
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 2 cut(s) 60, 117
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 39, 168
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 1 cut(s) 408
SetI ASST 2 cut(s) 129, 274
SfcI CTRYAG 1 cut(s) 140
SfoI GGCGCC 1 cut(s) 38
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 365
SphI GCATGC 1 cut(s) 396
Sse9I AATT 1 cut(s) 135
SsiI CCGC 3 cut(s) 59, 117, 215
SspDI GGCGCC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 21, 144
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 257
TasI AATT 1 cut(s) 135
TauI GCSGC 2 cut(s) 62, 119
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TscAI CASTG 3 cut(s) 24, 81, 149
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 189, 359
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 24, 81, 149
VpaK11BI GGWCC 1 cut(s) 227
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 207
ZraI GACGTC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.