Rmu_sc0002199.1_g000009

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002199.1
OG0010559
Physical Location & Seq
Forward (+)
40656 .. 41489
834 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
atggggaagggaaaccttataattgcaagcagatggttaatcttgcagaagataaccagcaattgcagaaggagatttcaagaaagtttggcttgtactacttttcctacatttgatgcaagaggtttccatcaagttcgtggtggcagctcatcattgacagaagagctggagggtattcttaatcctgaagatcaagggagggagagtagtactaactctatgacctgcatttacaaggttcctagcaccatgcgtcaggtgaacaggaaggcttacgagcccaacattgtgtccatcggtccttaccatcacggagttgaaagcctacaagaaatggagaagcttaagcacacatactttcggcgcctctttcaaccaaactaccatgatcggttggatgatgaagtagtgtcgctgaagaagaaggcggtagatgatgcgaagaaggcaatggaggaattggaggtggcggctaggagctgctactcggaacaatccaagcttagcagcaaggcgtttgtaaagatgatgctgattgatggttgcttcattatagggttgctcagggactcattgcaatccgattttgagcacacaccctccatcattcaaaggtggatgcttccaattctgcgccaggatttgatcaagctcgaaaatcagcttcccctctttgtcttgcgcaaattatttcagctgaccaaagcaagcactacttgtcatgagaaaccaattccaagttgggaattggaatcactagcccttggcttctttgagccgctactgcgaggacatgatgttctgaccgaagcgaagcactacttatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

277

Amino Acids

31.85

Weight (kDa)

8.46

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 78 - 263 1.9e-49 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
Acc16I TGCGCA 1 cut(s) 686
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 366
AciI CCGC 3 cut(s) 431, 473, 782
AcuI CTGAAG 2 cut(s) 210, 440
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 2 cut(s) 97, 214
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 4 cut(s) 80, 323, 377, 614
AjnI CCWGG 1 cut(s) 639
AloI GAACNNNNNNTCC 2 cut(s) 786, 818
AluBI AGCT 8 cut(s) 150, 169, 346, 483, 505, 655, 667, 700
AluI AGCT 8 cut(s) 150, 169, 346, 483, 505, 655, 667, 700
Alw21I GWGCWC 1 cut(s) 597
ApeKI GCWGC 3 cut(s) 147, 483, 510
AspLEI GCGC 3 cut(s) 369, 639, 687
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 3 cut(s) 159, 470, 522
BccI CCATC 6 cut(s) 27, 138, 305, 318, 536, 614
BciT130I CCWGG 1 cut(s) 641
BclI TGATCA 1 cut(s) 648
BfaI CTAG 3 cut(s) 246, 477, 761
BfoI RGCGCY 1 cut(s) 370
BfrI CTTAAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 5 cut(s) 148, 474, 484, 511, 782
BlpI GCTNAGC 1 cut(s) 506
BlsI GCNGC 5 cut(s) 149, 475, 485, 512, 783
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 243, 368
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 4 cut(s) 106, 430, 522, 612
BpmI CTGGAG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 566
Bpu1102I GCTNAGC 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 766
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 587, 617
Bse3DI GCAATG 2 cut(s) 459, 575
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 2 cut(s) 406, 627
BseMI GCAATG 2 cut(s) 459, 575
BseMII CTCAG 1 cut(s) 580
BseXI GCAGC 3 cut(s) 159, 470, 522
BshNI GGYRCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 597
BslFI GGGAC 1 cut(s) 584
BsmFI GGGAC 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 285, 597
Bsp143I GATC 3 cut(s) 193, 391, 648
Bsp1720I GCTNAGC 1 cut(s) 506
BspACI CCGC 3 cut(s) 431, 473, 782
BspCNI CTCAG 1 cut(s) 579
BspHI TCATGA 2 cut(s) 724, 830
BspLI GGNNCC 2 cut(s) 243, 368
BspMI ACCTGC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 459, 575
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 3 cut(s) 193, 391, 648
BssNI GRCGYC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 766
Bst2UI CCWGG 1 cut(s) 641
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 367
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 28, 712
BstDEI CTNAG 2 cut(s) 506, 566
BstF5I GGATG 2 cut(s) 406, 627
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 3 cut(s) 369, 639, 687
BstKTI GATC 3 cut(s) 196, 394, 651
BstMBI GATC 3 cut(s) 193, 391, 648
BstMWI GCNNNNNNNGC 2 cut(s) 449, 787
BstNI CCWGG 1 cut(s) 641
BstSCI CCNGG 1 cut(s) 639
BstV1I GCAGC 3 cut(s) 159, 470, 522
BtsCI GGATG 2 cut(s) 406, 627
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 28, 712
CciI TCATGA 2 cut(s) 724, 830
CfoI GCGC 3 cut(s) 369, 639, 687
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 96, 213
CviAII CATG 5 cut(s) 253, 389, 725, 797, 831
CviQI GTAC 2 cut(s) 96, 213
DdeI CTNAG 2 cut(s) 506, 566
DinI GGCGCC 1 cut(s) 368
DpnI GATC 3 cut(s) 195, 393, 650
DpnII GATC 3 cut(s) 193, 391, 648
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 766
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 210, 440
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 1 cut(s) 766
EcoT38I GRGCYC 1 cut(s) 285
EgeI GGCGCC 1 cut(s) 368
EheI GGCGCC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 5 cut(s) 256, 392, 728, 800, 834
FaiI YATR 9 cut(s) 20, 224, 254, 358, 390, 557, 726, 798, 832
FalI AAGNNNNNCTT 5 cut(s) 76, 108, 703, 735, 809
FaqI GGGAC 1 cut(s) 584
FatI CATG 5 cut(s) 252, 388, 724, 796, 830
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 5 cut(s) 148, 474, 484, 511, 782
FokI GGATG 2 cut(s) 413, 634
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 5 cut(s) 148, 474, 484, 511, 782
FspBI CTAG 3 cut(s) 246, 477, 761
FspI TGCGCA 1 cut(s) 686
GlaI GCGC 3 cut(s) 368, 638, 686
GluI GCNGC 5 cut(s) 148, 474, 484, 511, 782
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 370
HgaI GACGC 1 cut(s) 245
HhaI GCGC 3 cut(s) 369, 639, 687
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 5 cut(s) 256, 392, 728, 800, 834
Hin6I GCGC 3 cut(s) 367, 637, 685
HinP1I GCGC 3 cut(s) 367, 637, 685
HindIII AAGCTT 2 cut(s) 344, 503
HinfI GANTC 2 cut(s) 572, 755
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 493, 586, 807
Hpy188III TCNNGA 4 cut(s) 80, 188, 725, 831
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 4 cut(s) 63, 265, 421, 442
HpyCH4V TGCA 6 cut(s) 26, 46, 66, 119, 231, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 787
HpyF3I CTNAG 2 cut(s) 506, 566
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 5 cut(s) 256, 392, 728, 800, 834
HspAI GCGC 3 cut(s) 367, 637, 685
KasI GGCGCC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 3 cut(s) 193, 391, 648
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 480
LpnPI CCDG 9 cut(s) 70, 155, 201, 241, 245, 253, 553, 626, 653
Lsp1109I GCAGC 3 cut(s) 159, 470, 522
LweI GCATC 4 cut(s) 106, 430, 522, 612
MaeI CTAG 3 cut(s) 246, 477, 761
MalI GATC 3 cut(s) 195, 393, 650
MboI GATC 3 cut(s) 193, 391, 648
MboII GAAGA 6 cut(s) 61, 176, 203, 433, 436, 457
MfeI CAATTG 1 cut(s) 61
MhlI GDGCHC 2 cut(s) 285, 597
MluCI AATT 7 cut(s) 21, 61, 461, 630, 689, 735, 749
Mly113I GGCGCC 1 cut(s) 367
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 9 cut(s) 116, 166, 195, 380, 451, 460, 613, 683, 785
MseI TTAA 3 cut(s) 38, 183, 348
MspA1I CMGCKG 1 cut(s) 700
MspCI CTTAAG 1 cut(s) 347
MspR9I CCNGG 1 cut(s) 641
MunI CAATTG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 2 cut(s) 449, 787
NarI GGCGCC 1 cut(s) 367
NdeII GATC 3 cut(s) 193, 391, 648
NlaIII CATG 5 cut(s) 256, 392, 728, 800, 834
NlaIV GGNNCC 2 cut(s) 243, 368
NsbI TGCGCA 1 cut(s) 686
PagI TCATGA 2 cut(s) 724, 830
PciSI GCTCTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 755
PkrI GCNGC 5 cut(s) 149, 475, 485, 512, 783
PleI GAGTC 1 cut(s) 566
PluTI GGCGCC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 566
PsiI TTATAA 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 2 cut(s) 243, 368
PspPI GGNCC 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 2 cut(s) 97, 214
RsaNI GTAC 2 cut(s) 96, 213
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 38, 183, 348
SatI GCNGC 5 cut(s) 148, 474, 484, 511, 782
Sau3AI GATC 3 cut(s) 193, 391, 648
Sau96I GGNCC 1 cut(s) 302
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 2 cut(s) 285, 597
SfaNI GCATC 4 cut(s) 106, 430, 522, 612
SfoI GGCGCC 1 cut(s) 368
SinI GGWCC 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 7 cut(s) 21, 61, 461, 630, 689, 735, 749
SsiI CCGC 3 cut(s) 431, 473, 782
SspDI GGCGCC 1 cut(s) 366
SspMI CTAG 3 cut(s) 246, 477, 761
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 766
TaqI TCGA 1 cut(s) 657
TaqII GACCGA 2 cut(s) 290, 824
TasI AATT 7 cut(s) 21, 61, 461, 630, 689, 735, 749
TatI WGTACW 2 cut(s) 95, 212
TauI GCSGC 2 cut(s) 476, 784
TfiI GAWTC 1 cut(s) 755
Tru1I TTAA 3 cut(s) 38, 183, 348
Tru9I TTAA 3 cut(s) 38, 183, 348
TseI GCWGC 3 cut(s) 147, 483, 510
TspDTI ATGAA 2 cut(s) 420, 541
TspGWI ACGGA 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 2 cut(s) 137, 741
XspI CTAG 3 cut(s) 246, 477, 761
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.