Rmu_sc0002250.1_g000004

Cytochrome c6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002250.1
OG0013171
Physical Location & Seq
Reverse (-)
35151 .. 38227
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
atggggggagaattcggggacaaatggggaatggggatggggatccccaatctttgctatctaagattggggatggggcggggatgtcttccattaaagaaagggatgatgcagcttacgtctttgatatcaaacaccaataatgctgcctatttcttcccaaggtgtgcagtgaagcaacaacacatcaacccaattcctcagaagcaagaacaatgtaagcttttaaggagcttggctccacctctaatggccgcagctctggccttatctccaatctgcgttacccctgtctcacatgcccaaaccattgatgttcagagaggagctgcgttgtttcgtactacttgcattggttgtcatgatgcaggtggaaacataatacaaccaggtgcaacactctttactaaagatctacaaagaaatggagttgacacagaggaggagatatatcgtgttacttactttggcaagggaagaatgccaggttttggtcagaactgcacaccgaggggccaatgcacatttggagctcgattgcaggacgaggacattaagcttttagctgagtttgtcaagttacaggctgatcaagactggagaaataatctaagtaatgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 map00195
Pfam Domains
Protein Families
Cytochrome_CBB3

Protein Analysis

207

Amino Acids

22.77

Weight (kDa)

8.75

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_CBB3 PF13442 106 - 170 1.4e-09 Cytochrome C oxidase, cbb3-type, subunit III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45040
fragaria_vesca FvH4_3g12220 FvH4_3g12220
malus_domestica MD05G1252700.v1.1 MD10G1233800.v1.1
prunus_persica Prupe.4G111200_v2.0.a1
pyrus_communis pycom05g23080
rosa_chinensis RchiOBHm_Chr5g0020011
rosa_laevigata RLG00000032493
rosa_multiflora Rmu_sc0002250.1_g000004
rosa_roxburghii Rroxscaffold_1G00058180
rosa_rugosa Rorug05G0056300 Rorug05G0056300
rosa_samantha Rh5AG146400 Rh5BG145900 Rh5CG157300 Rh5DG145300
rosa_wichuraiana Rw5G012930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 491
AciI CCGC 2 cut(s) 79, 255
AclWI GGATC 2 cut(s) 37, 50
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 1 cut(s) 491
AjnI CCWGG 2 cut(s) 388, 484
AluBI AGCT 8 cut(s) 115, 223, 234, 260, 329, 533, 559, 566
AluI AGCT 8 cut(s) 115, 223, 234, 260, 329, 533, 559, 566
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 2 cut(s) 37, 50
AoxI GGCC 3 cut(s) 252, 264, 514
ApeKI GCWGC 4 cut(s) 112, 146, 257, 329
ApoI RAATTY 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 514
BamHI GGATCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 4 cut(s) 124, 133, 269, 316
BccI CCATC 2 cut(s) 31, 67
BciT130I CCWGG 2 cut(s) 390, 486
BclI TGATCA 1 cut(s) 589
BcoDI GTCTC 1 cut(s) 298
BfuAI ACCTGC 1 cut(s) 359
BglII AGATCT 1 cut(s) 412
BisI GCNGC 5 cut(s) 113, 147, 255, 258, 330
BlsI GCNGC 5 cut(s) 114, 148, 256, 259, 331
Bme1390I CCNGG 2 cut(s) 390, 486
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 3 cut(s) 44, 240, 515
BmrFI CCNGG 2 cut(s) 390, 486
BmsI GCATC 2 cut(s) 99, 355
BpiI GAAGAC 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 223, 255
BpmI CTGGAG 1 cut(s) 619
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 161, 509
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 602
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 2 cut(s) 390, 486
BseDI CCNNGG 2 cut(s) 161, 509
BseGI GGATG 4 cut(s) 42, 78, 89, 111
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 2 cut(s) 215, 558
BseNI ACTGG 1 cut(s) 602
BseRI GAGGAG 3 cut(s) 339, 455, 458
BseXI GCAGC 4 cut(s) 124, 133, 269, 316
BsgI GTGCAG 2 cut(s) 189, 487
BshFI GGCC 3 cut(s) 254, 266, 516
BsiHKAI GWGCWC 1 cut(s) 535
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 3 cut(s) 254, 266, 516
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 3 cut(s) 42, 412, 589
BspACI CCGC 2 cut(s) 79, 255
BspANI GGCC 3 cut(s) 254, 266, 516
BspCNI CTCAG 2 cut(s) 214, 559
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 44, 240, 515
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 2 cut(s) 37, 50
BsrI ACTGG 1 cut(s) 602
BssECI CCNNGG 2 cut(s) 161, 509
BssMI GATC 3 cut(s) 42, 412, 589
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 2 cut(s) 390, 486
BstDEI CTNAG 4 cut(s) 62, 201, 567, 611
BstF5I GGATG 4 cut(s) 42, 78, 89, 111
BstKTI GATC 3 cut(s) 45, 415, 592
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 3 cut(s) 42, 412, 589
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 2 cut(s) 390, 486
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 388, 484
BstV1I GCAGC 4 cut(s) 124, 133, 269, 316
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 2 cut(s) 42, 412
BstYI RGATCY 2 cut(s) 42, 412
BsuRI GGCC 3 cut(s) 254, 266, 516
BtsCI GGATG 4 cut(s) 42, 78, 89, 111
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 359
CciI TCATGA 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 514
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 299, 362
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 4 cut(s) 62, 201, 567, 611
DpnI GATC 3 cut(s) 44, 414, 591
DpnII GATC 3 cut(s) 42, 412, 589
EaeI YGGCCR 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 535
Eco32I GATATC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 388, 484
EcoRV GATATC 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 535
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 302, 365
FaiI YATR 4 cut(s) 300, 363, 380, 451
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 298, 361
FauI CCCGC 1 cut(s) 72
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 5 cut(s) 113, 147, 255, 258, 330
FokI GGATG 4 cut(s) 49, 85, 96, 118
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 5 cut(s) 113, 147, 255, 258, 330
GluI GCNGC 5 cut(s) 113, 147, 255, 258, 330
GsuI CTGGAG 1 cut(s) 619
HaeIII GGCC 3 cut(s) 254, 266, 516
Hin1II CATG 2 cut(s) 302, 365
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 2 cut(s) 221, 557
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 3 cut(s) 204, 321, 498
Hpy188III TCNNGA 2 cut(s) 362, 593
Hpy8I GTNNAC 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 8 cut(s) 112, 170, 351, 368, 395, 504, 522, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 4 cut(s) 62, 201, 567, 611
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 2 cut(s) 302, 365
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 3 cut(s) 42, 412, 589
LmnI GCTCC 4 cut(s) 231, 244, 326, 530
Lsp1109I GCAGC 4 cut(s) 124, 133, 269, 316
LweI GCATC 2 cut(s) 99, 355
MabI ACCWGGT 1 cut(s) 388
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 3 cut(s) 283, 457, 579
MalI GATC 3 cut(s) 44, 414, 591
MboI GATC 3 cut(s) 42, 412, 589
MboII GAAGA 3 cut(s) 80, 148, 489
MflI RGATCY 2 cut(s) 42, 412
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 2 cut(s) 11, 195
MnlI CCTC 7 cut(s) 210, 255, 317, 433, 436, 504, 541
MseI TTAA 3 cut(s) 95, 227, 555
MspR9I CCNGG 2 cut(s) 390, 486
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 2 cut(s) 390, 486
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 3 cut(s) 42, 412, 589
NlaIII CATG 2 cut(s) 302, 365
NlaIV GGNNCC 3 cut(s) 44, 240, 515
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 361
PaqCI CACCTGC 1 cut(s) 359
PctI GAATGC 1 cut(s) 486
PflMI CCANNNNNTGG 1 cut(s) 491
PkrI GCNGC 5 cut(s) 114, 148, 256, 259, 331
Psp124BI GAGCTC 1 cut(s) 535
Psp6I CCWGG 2 cut(s) 388, 484
PspGI CCWGG 2 cut(s) 388, 484
PspN4I GGNNCC 3 cut(s) 44, 240, 515
PspPI GGNCC 1 cut(s) 514
PsuI RGATCY 2 cut(s) 42, 412
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SacI GAGCTC 1 cut(s) 535
SaqAI TTAA 3 cut(s) 95, 227, 555
SatI GCNGC 5 cut(s) 113, 147, 255, 258, 330
Sau3AI GATC 3 cut(s) 42, 412, 589
Sau96I GGNCC 1 cut(s) 514
ScrFI CCNGG 2 cut(s) 390, 486
SduI GDGCHC 1 cut(s) 535
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 2 cut(s) 99, 355
Sse9I AATT 2 cut(s) 11, 195
SsiI CCGC 2 cut(s) 79, 255
SstI GAGCTC 1 cut(s) 535
StyD4I CCNGG 2 cut(s) 388, 484
StyI CCWWGG 1 cut(s) 161
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 535
TasI AATT 2 cut(s) 11, 195
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 95, 227, 555
Tru9I TTAA 3 cut(s) 95, 227, 555
TscAI CASTG 1 cut(s) 177
TseI GCWGC 4 cut(s) 112, 146, 257, 329
TspRI CASTG 1 cut(s) 177
Van91I CCANNNNNTGG 1 cut(s) 491
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.