Rmu_sc0002327.1_g000028

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002327.1
OG0018028
Physical Location & Seq
Forward (+)
98242 .. 99042
801 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
atgtgttcaaagacgtctaacgagaagctcagtcgtatagactgcccagattgggcaagtcttcacagatcccccgtctatttgtttctggacaagtttttggaacccattgatcttgttcgttttgctgcagtttgcaaggagtggcgtgcagtttcagaagattataatgaagcaaagcagcggtggtgtaaaagtaagctacttccgatgctcttgatcccatgtacttccgaagaaaagctagaactgtacagcattgctgaaagagaagtctacagcaatatcgagttaccattgccttgtagtaattctaggaggtgttttggctccaaccacgacagtggtggttggttgaccataggagatcaagtagagcgtgagttgccatatttagatataactctcacgaaccctttcagaaaagaagtggcacccattaaccttcctcatttgcaattcaaatatttatctcaagaaggacgttggcagcgcccgaaggttatattatccggtgatcccacattgaacccggacagttttgtggttttaacaatcaatagtcaattgcaaaatggacaccaggtgtcttccattaagggactaaatagtgattgggttcattgggactttgcttataacgttactgatgccatagtttatagaagccagatctacttggttactgttgatagatggctcgctttgttggatgttgaccaggcaataacaaacatattccttccgcctcaacaaattcttccgccagctaaggtgtatcttgtagaatcaacacggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

266

Amino Acids

30.67

Weight (kDa)

5.78

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 84 - 264 1.2e-16 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 168, 639
AatII GACGTC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 276
AciI CCGC 3 cut(s) 184, 746, 764
AclI AACGTT 1 cut(s) 642
AclWI GGATC 3 cut(s) 63, 214, 512
AcsI RAATTY 1 cut(s) 756
AcyI GRCGYC 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 586
AfaI GTAC 2 cut(s) 229, 254
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 3 cut(s) 9, 463, 529
AjnI CCWGG 2 cut(s) 582, 720
AleI CACNNNNGTG 1 cut(s) 342
AluBI AGCT 4 cut(s) 28, 202, 244, 770
AluI AGCT 4 cut(s) 28, 202, 244, 770
AlwI GGATC 3 cut(s) 63, 214, 512
ApeKI GCWGC 3 cut(s) 128, 181, 490
ApoI RAATTY 1 cut(s) 756
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 495
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 1 cut(s) 527
BanI GGYRCC 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 53, 582
BbvI GCAGC 3 cut(s) 115, 193, 502
BccI CCATC 1 cut(s) 690
BciT130I CCWGG 2 cut(s) 584, 722
BcnI CCSGG 1 cut(s) 533
BfaI CTAG 2 cut(s) 245, 315
BfmI CTRYAG 2 cut(s) 129, 277
BfoI RGCGCY 1 cut(s) 496
BglII AGATCT 1 cut(s) 672
BisI GCNGC 3 cut(s) 129, 182, 491
BlsI GCNGC 3 cut(s) 130, 183, 492
Bme1390I CCNGG 3 cut(s) 533, 584, 722
BmiI GGNNCC 3 cut(s) 105, 331, 435
BmrFI CCNGG 3 cut(s) 533, 584, 722
BmsI GCATC 2 cut(s) 201, 640
BpiI GAAGAC 2 cut(s) 53, 582
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 512
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse3DI GCAATG 2 cut(s) 258, 296
BseBI CCWGG 2 cut(s) 584, 722
BseGI GGATG 1 cut(s) 718
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 2 cut(s) 258, 296
BseMII CTCAG 1 cut(s) 43
BseXI GCAGC 3 cut(s) 115, 193, 502
BsgI GTGCAG 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 433
BsiSI CCGG 2 cut(s) 513, 533
BslFI GGGAC 2 cut(s) 615, 641
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 615, 641
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 6 cut(s) 68, 112, 219, 367, 517, 672
BspACI CCGC 3 cut(s) 184, 746, 764
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 105, 331, 435
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 3 cut(s) 63, 214, 512
BspT107I GGYRCC 1 cut(s) 433
BsrDI GCAATG 2 cut(s) 258, 296
BsrGI TGTACA 1 cut(s) 252
BssMI GATC 6 cut(s) 68, 112, 219, 367, 517, 672
BssNI GRCGYC 1 cut(s) 14
Bst2UI CCWGG 2 cut(s) 584, 722
Bst4CI ACNGT 5 cut(s) 252, 344, 539, 688, 798
BstACI GRCGYC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 150, 702, 768
BstDEI CTNAG 2 cut(s) 29, 771
BstF5I GGATG 1 cut(s) 718
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 6 cut(s) 71, 115, 222, 370, 520, 675
BstMBI GATC 6 cut(s) 68, 112, 219, 367, 517, 672
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 2 cut(s) 584, 722
BstSCI CCNGG 3 cut(s) 531, 582, 720
BstSFI CTRYAG 2 cut(s) 129, 277
BstV1I GCAGC 3 cut(s) 115, 193, 502
BstV2I GAAGAC 2 cut(s) 53, 582
BstX2I RGATCY 2 cut(s) 68, 672
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 2 cut(s) 68, 672
BtsCI GGATG 1 cut(s) 718
BtsIMutI CAGTG 1 cut(s) 349
Cac8I GCNNGC 3 cut(s) 150, 702, 768
CfoI GCGC 1 cut(s) 495
CsiI ACCWGGT 1 cut(s) 582
Csp6I GTAC 2 cut(s) 228, 253
CviAII CATG 1 cut(s) 225
CviJI RGCY 7 cut(s) 28, 202, 244, 330, 669, 700, 770
CviKI_1 RGCY 7 cut(s) 28, 202, 244, 330, 669, 700, 770
CviQI GTAC 2 cut(s) 228, 253
DdeI CTNAG 2 cut(s) 29, 771
DpnI GATC 6 cut(s) 70, 114, 221, 369, 519, 674
DpnII GATC 6 cut(s) 68, 112, 219, 367, 517, 672
DraIII CACNNNGTG 1 cut(s) 586
EciI GGCGGA 2 cut(s) 735, 753
EcoRII CCWGG 2 cut(s) 582, 720
FaeI CATG 1 cut(s) 228
FaqI GGGAC 2 cut(s) 615, 641
FatI CATG 1 cut(s) 224
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 129, 182, 491
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 3 cut(s) 129, 182, 491
FspBI CTAG 2 cut(s) 245, 315
GlaI GCGC 1 cut(s) 494
GluI GCNGC 3 cut(s) 129, 182, 491
HaeII RGCGCY 1 cut(s) 496
HapII CCGG 2 cut(s) 513, 533
HhaI GCGC 1 cut(s) 495
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 1 cut(s) 228
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HincII GTYRAC 2 cut(s) 357, 718
HindII GTYRAC 2 cut(s) 357, 718
HinfI GANTC 1 cut(s) 788
HpaII CCGG 2 cut(s) 513, 533
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 3 cut(s) 277, 357, 718
Hpy188I TCNGA 4 cut(s) 160, 210, 235, 422
Hpy188III TCNNGA 4 cut(s) 89, 217, 409, 476
Hpy8I GTNNAC 3 cut(s) 277, 357, 718
HpyAV CCTTC 4 cut(s) 455, 473, 493, 752
HpyCH4III ACNGT 5 cut(s) 252, 344, 539, 688, 798
HpyCH4IV ACGT 3 cut(s) 14, 484, 642
HpyCH4V TGCA 5 cut(s) 131, 138, 152, 457, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 2 cut(s) 29, 771
HpySE526I ACGT 3 cut(s) 14, 484, 642
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 228
HspAI GCGC 1 cut(s) 493
Kzo9I GATC 6 cut(s) 68, 112, 219, 367, 517, 672
LmnI GCTCC 1 cut(s) 335
Lsp1109I GCAGC 3 cut(s) 115, 193, 502
LweI GCATC 2 cut(s) 201, 640
MabI ACCWGGT 1 cut(s) 582
MaeI CTAG 2 cut(s) 245, 315
MaeII ACGT 3 cut(s) 14, 484, 642
MaeIII GTNAC 3 cut(s) 291, 643, 682
MalI GATC 6 cut(s) 70, 114, 221, 369, 519, 674
MboI GATC 6 cut(s) 68, 112, 219, 367, 517, 672
MboII GAAGA 5 cut(s) 53, 173, 248, 582, 752
MfeI CAATTG 1 cut(s) 566
MflI RGATCY 2 cut(s) 68, 672
MluCI AATT 4 cut(s) 310, 458, 566, 756
MmeI TCCRAC 2 cut(s) 357, 690
MnlI CCTC 3 cut(s) 312, 459, 759
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 3 cut(s) 441, 551, 597
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 2 cut(s) 513, 533
MspR9I CCNGG 3 cut(s) 533, 584, 722
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 2 cut(s) 584, 722
MwoI GCNNNNNNNGC 1 cut(s) 385
NciI CCSGG 1 cut(s) 533
NdeII GATC 6 cut(s) 68, 112, 219, 367, 517, 672
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 3 cut(s) 105, 331, 435
OliI CACNNNNGTG 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 788
PkrI GCNGC 3 cut(s) 130, 183, 492
PsiI TTATAA 2 cut(s) 168, 639
Psp1406I AACGTT 1 cut(s) 642
Psp6I CCWGG 2 cut(s) 582, 720
PspGI CCWGG 2 cut(s) 582, 720
PspN4I GGNNCC 3 cut(s) 105, 331, 435
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 2 cut(s) 68, 672
RsaI GTAC 2 cut(s) 229, 254
RsaNI GTAC 2 cut(s) 228, 253
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 3 cut(s) 441, 551, 597
SatI GCNGC 3 cut(s) 129, 182, 491
Sau3AI GATC 6 cut(s) 68, 112, 219, 367, 517, 672
ScrFI CCNGG 3 cut(s) 533, 584, 722
SexAI ACCWGGT 1 cut(s) 582
SfaNI GCATC 2 cut(s) 201, 640
SfcI CTRYAG 2 cut(s) 129, 277
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 4 cut(s) 310, 458, 566, 756
SsiI CCGC 3 cut(s) 184, 746, 764
SspI AATATT 1 cut(s) 467
SspMI CTAG 2 cut(s) 245, 315
StyD4I CCNGG 3 cut(s) 531, 582, 720
TaaI ACNGT 5 cut(s) 252, 344, 539, 688, 798
TaiI ACGT 3 cut(s) 17, 487, 645
TaqI TCGA 1 cut(s) 288
TasI AATT 4 cut(s) 310, 458, 566, 756
TatI WGTACW 2 cut(s) 227, 252
TfiI GAWTC 1 cut(s) 788
Tru1I TTAA 3 cut(s) 441, 551, 597
Tru9I TTAA 3 cut(s) 441, 551, 597
TscAI CASTG 1 cut(s) 349
TseI GCWGC 3 cut(s) 128, 181, 490
TspDTI ATGAA 2 cut(s) 186, 611
TspRI CASTG 1 cut(s) 349
XapI RAATTY 1 cut(s) 756
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 245, 315
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.