Rmu_sc0002396.1_g000003

nitronate

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002396.1
Physical Location & Seq
Forward (+)
7499 .. 14306
6808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002396.1_g000003.1.cds

Sequence Viewer

Length: 1278 bp
atgggttggcatgggattctgggttttgagtatggaatagttcaggcaccattgggacctgatatttctggaccggagcttgttgctgctgttgctaatgctggtggactagctttcctcagggctcctgattgggaatcaccggactaccttcgagagctaatcagtaagactcgaagcttaactgacaaaccatttggggtcggtgttgtcctggcatttccacatgagaaaaatataaacgtcatcttggaggaaaaggtagcagtgctacaggtatactggggtgattgttctgtggagcttgtgacgaaagctcatcgttctggggttaagattgttcctcaagtagggagtttggaggaggcaaaaaaagcaatcgatgctggtgtagatgcgattattgtccaaggacgtgaagctggagggcatgtgatcagtcaggatgctttgatttcattgttgccaaaggtagtcgatcttgttggagatcgcaatataactgtcattgcggcaggtggtattgtggatgctcgtggatatgttgcagcccttgcccttggtgcacaaggagtctgcctaggcactaggtttcttgcaactgaggaaagttatgctcatcccacatacaagaggaagttggttgaatatgacagaactgagtacactgatatatttggtcgtgcaagatggcccggagcaccccatcgtgttttaaagacgcctttcttcagtgattggaagtctcttcctgttcatgaaaccgaagctaatcagccagtcattggtcgaacaacaatacatgacagggaaatagaaatccgtcgtcttggcggtacagtgccaaatgtgacgacaactggggacattgaaagcatggttttgtatgctggccaaagtgtaggcctcatcaaggaaattttacctgcagcagaggtggtaaagaggctagttgaaggcgctcaacttctaatcaagcagaaagcgcgtcgatatgagttcgtggacatacgaaacgcggaaatcggagttgctctccacttcaccggcgacgttctccctcgtctggccgcctttggatgtgaaactaagtgggttttcttcggctcaacctcctctacaagtctgtggaagtggttcctcacgattcgagccgtaagaggagcaacaaggctaagaagaagccgcagcggagctgaaatctccttgatcagagtcggcgattccggccatcatagccggtgtttcttgagggcctttggagcccaaaggacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

46.41

Weight (kDa)

8.91

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013392)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 506
Acc36I ACCTGC 2 cut(s) 506, 934
AccB1I GGYRCC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 785
AccI GTMKAC 1 cut(s) 279
AccII CGCG 2 cut(s) 988, 1019
AciI CCGC 6 cut(s) 512, 834, 1019, 1071, 1186, 1191
AcoI YGGCCR 3 cut(s) 892, 1068, 1228
AcsI RAATTY 1 cut(s) 918
AcuI CTGAAG 1 cut(s) 715
AcyI GRCGYC 1 cut(s) 722
AfaI GTAC 2 cut(s) 665, 838
AfiI CCNNNNNNNGG 4 cut(s) 350, 785, 913, 1066
AgsI TTSAA 3 cut(s) 647, 872, 956
AjiI CACGTC 1 cut(s) 416
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 9 cut(s) 79, 113, 160, 180, 304, 317, 422, 770, 1196
AluI AGCT 9 cut(s) 79, 113, 160, 180, 304, 317, 422, 770, 1196
Alw21I GWGCWC 2 cut(s) 568, 703
Alw26I GTCTC 1 cut(s) 750
Alw44I GTGCAC 1 cut(s) 564
AoxI GGCC 6 cut(s) 692, 892, 904, 1068, 1228, 1254
ApaLI GTGCAC 1 cut(s) 564
ApeKI GCWGC 4 cut(s) 86, 548, 929, 1188
ApoI RAATTY 1 cut(s) 918
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
Asp700I GAANNNNTTC 1 cut(s) 1136
AspA2I CCTAGG 1 cut(s) 580
AspLEI GCGC 2 cut(s) 962, 988
AspS9I GGNCC 4 cut(s) 56, 71, 693, 1254
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 3 cut(s) 132, 299, 1036
AvaII GGWCC 2 cut(s) 56, 71
AvrII CCTAGG 1 cut(s) 580
AxyI CCTNAGG 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 568
BalI TGGCCA 1 cut(s) 894
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 127, 1267
BauI CACGAG 1 cut(s) 534
Bbv12I GWGCWC 2 cut(s) 568, 703
BbvI GCAGC 4 cut(s) 73, 560, 941, 1200
BccI CCATC 3 cut(s) 684, 714, 1239
BceAI ACGGC 1 cut(s) 1139
BciT130I CCWGG 1 cut(s) 215
BclI TGATCA 2 cut(s) 435, 1209
BcnI CCSGG 1 cut(s) 696
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 4 cut(s) 110, 581, 588, 950
BfmI CTRYAG 2 cut(s) 272, 927
BfoI RGCGCY 1 cut(s) 963
BfuAI ACCTGC 2 cut(s) 506, 934
BisI GCNGC 7 cut(s) 87, 513, 549, 930, 1071, 1186, 1189
BlnI CCTAGG 1 cut(s) 580
BlsI GCNGC 7 cut(s) 88, 514, 550, 931, 1072, 1187, 1190
Bme1390I CCNGG 2 cut(s) 215, 696
Bme18I GGWCC 2 cut(s) 56, 71
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 4 cut(s) 56, 71, 693, 1254
BmiI GGNNCC 5 cut(s) 48, 57, 126, 1139, 1264
BmrFI CCNGG 2 cut(s) 215, 696
BmrI ACTGGG 2 cut(s) 292, 870
BmsI GCATC 4 cut(s) 373, 385, 436, 520
BmuI ACTGGG 2 cut(s) 292, 870
BplI GAGNNNNNCTC 2 cut(s) 1020, 1052
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 330, 1270
BpuMI CCSGG 1 cut(s) 696
Bsa29I ATCGAT 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 722
BsaJI CCNNGG 3 cut(s) 409, 559, 580
BsaWI WCCGGW 2 cut(s) 73, 142
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 350, 785, 913, 1066
Bse118I RCCGGY 2 cut(s) 1046, 1239
Bse1I ACTGG 3 cut(s) 287, 779, 865
Bse21I CCTNAGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 409, 559, 580
BseGI GGATG 4 cut(s) 451, 535, 619, 1085
BseLI CCNNNNNNNGG 4 cut(s) 350, 785, 913, 1066
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 3 cut(s) 133, 594, 651
BseNI ACTGG 3 cut(s) 287, 779, 865
BseRI GAGGAG 3 cut(s) 377, 1105, 1176
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 4 cut(s) 73, 560, 941, 1200
Bsh1236I CGCG 2 cut(s) 988, 1019
BshFI GGCC 6 cut(s) 694, 894, 906, 1070, 1230, 1256
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 568, 703
BsiSI CCGG 6 cut(s) 74, 143, 696, 1047, 1227, 1240
BslFI GGGAC 2 cut(s) 69, 878
BslI CCNNNNNNNGG 4 cut(s) 350, 785, 913, 1066
BsmAI GTCTC 1 cut(s) 750
BsmFI GGGAC 2 cut(s) 69, 878
BsnI GGCC 6 cut(s) 694, 894, 906, 1070, 1230, 1256
Bsp1286I GDGCHC 4 cut(s) 127, 568, 703, 1267
Bsp143I GATC 4 cut(s) 435, 478, 490, 1209
BspACI CCGC 6 cut(s) 512, 834, 1019, 1071, 1186, 1191
BspANI GGCC 6 cut(s) 694, 894, 906, 1070, 1230, 1256
BspCNI CTCAG 3 cut(s) 132, 595, 652
BspDI ATCGAT 1 cut(s) 381
BspFNI CGCG 2 cut(s) 988, 1019
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 5 cut(s) 48, 57, 126, 1139, 1264
BspMAI CTGCAG 1 cut(s) 931
BspMI ACCTGC 2 cut(s) 506, 934
BspT107I GGYRCC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 2 cut(s) 1046, 1239
BsrI ACTGG 3 cut(s) 287, 779, 865
BssAI RCCGGY 2 cut(s) 1046, 1239
BssECI CCNNGG 3 cut(s) 409, 559, 580
BssMI GATC 4 cut(s) 435, 478, 490, 1209
BssNAI GTATAC 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 722
BssSI CACGAG 1 cut(s) 534
BssT1I CCWWGG 3 cut(s) 409, 559, 580
Bst1107I GTATAC 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 505, 841
Bst6I CTCTTC 1 cut(s) 753
BstACI GRCGYC 1 cut(s) 722
BstAPI GCANNNNNTGC 2 cut(s) 383, 554
BstC8I GCNNGC 1 cut(s) 892
BstDEI CTNAG 6 cut(s) 119, 603, 660, 1089, 1175, 1275
BstENI CCTNNNNNAGG 2 cut(s) 348, 911
BstF5I GGATG 4 cut(s) 451, 535, 619, 1085
BstFNI CGCG 2 cut(s) 988, 1019
BstH2I RGCGCY 1 cut(s) 963
BstHHI GCGC 2 cut(s) 962, 988
BstKTI GATC 4 cut(s) 438, 481, 493, 1212
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 4 cut(s) 435, 478, 490, 1209
BstMWI GCNNNNNNNGC 9 cut(s) 92, 374, 383, 554, 563, 985, 1227, 1236, 1262
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 213, 694
BstSFI CTRYAG 2 cut(s) 272, 927
BstSLI GKGCMC 1 cut(s) 568
BstUI CGCG 2 cut(s) 988, 1019
BstV1I GCAGC 4 cut(s) 73, 560, 941, 1200
BstZ17I GTATAC 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 119
BsuRI GGCC 6 cut(s) 694, 894, 906, 1070, 1230, 1256
BsuTUI ATCGAT 1 cut(s) 381
BtrI CACGTC 1 cut(s) 416
BtsCI GGATG 4 cut(s) 451, 535, 619, 1085
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 4 cut(s) 273, 666, 739, 846
BveI ACCTGC 2 cut(s) 506, 934
Cac8I GCNNGC 1 cut(s) 892
CciI TCATGA 1 cut(s) 757
CfoI GCGC 2 cut(s) 962, 988
Cfr10I RCCGGY 2 cut(s) 1046, 1239
Cfr13I GGNCC 4 cut(s) 56, 71, 693, 1254
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 2 cut(s) 730, 977
Csp6I GTAC 2 cut(s) 664, 837
CviAII CATG 6 cut(s) 11, 227, 431, 758, 803, 877
CviQI GTAC 2 cut(s) 664, 837
DdeI CTNAG 6 cut(s) 119, 603, 660, 1089, 1175, 1275
DpnI GATC 4 cut(s) 437, 480, 492, 1211
DpnII GATC 4 cut(s) 435, 478, 490, 1209
DraI TTTAAA 1 cut(s) 717
EaeI YGGCCR 3 cut(s) 892, 1068, 1228
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco130I CCWWGG 3 cut(s) 409, 559, 580
Eco147I AGGCCT 1 cut(s) 906
Eco24I GRGCYC 2 cut(s) 127, 1267
Eco47I GGWCC 2 cut(s) 56, 71
Eco57I CTGAAG 1 cut(s) 715
Eco81I CCTNAGG 1 cut(s) 119
EcoNI CCTNNNNNAGG 2 cut(s) 348, 911
EcoO109I RGGNCCY 2 cut(s) 56, 1254
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 3 cut(s) 409, 559, 580
EcoT38I GRGCYC 2 cut(s) 127, 1267
ErhI CCWWGG 3 cut(s) 409, 559, 580
FaeI CATG 6 cut(s) 14, 230, 434, 761, 806, 880
FaqI GGGAC 2 cut(s) 69, 878
FatI CATG 6 cut(s) 10, 226, 430, 757, 802, 876
FbaI TGATCA 2 cut(s) 435, 1209
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 7 cut(s) 87, 513, 549, 930, 1071, 1186, 1189
FokI GGATG 4 cut(s) 458, 542, 606, 1092
FriOI GRGCYC 2 cut(s) 127, 1267
Fsp4HI GCNGC 7 cut(s) 87, 513, 549, 930, 1071, 1186, 1189
FspBI CTAG 4 cut(s) 110, 581, 588, 950
GlaI GCGC 2 cut(s) 961, 987
GluI GCNGC 7 cut(s) 87, 513, 549, 930, 1071, 1186, 1189
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 963
HaeIII GGCC 6 cut(s) 694, 894, 906, 1070, 1230, 1256
HapII CCGG 6 cut(s) 74, 143, 696, 1047, 1227, 1240
HgaI GACGC 2 cut(s) 730, 977
HhaI GCGC 2 cut(s) 962, 988
Hin1I GRCGYC 1 cut(s) 722
Hin1II CATG 6 cut(s) 14, 230, 434, 761, 806, 880
Hin6I GCGC 2 cut(s) 960, 986
HinP1I GCGC 2 cut(s) 960, 986
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 7 cut(s) 16, 137, 172, 573, 1147, 1215, 1223
HpaII CCGG 6 cut(s) 74, 143, 696, 1047, 1227, 1240
HphI GGTGA 3 cut(s) 132, 299, 1036
Hpy166II GTNNAC 5 cut(s) 107, 280, 566, 666, 1006
Hpy188I TCNGA 2 cut(s) 1028, 1214
Hpy188III TCNNGA 7 cut(s) 69, 128, 155, 443, 758, 1144, 1249
Hpy8I GTNNAC 5 cut(s) 107, 280, 566, 666, 1006
Hpy99I CGWCG 3 cut(s) 828, 993, 1055
HpyAV CCTTC 2 cut(s) 161, 950
HpyCH4III ACNGT 2 cut(s) 505, 841
HpyCH4IV ACGT 3 cut(s) 243, 415, 1053
HpyCH4V TGCA 5 cut(s) 548, 566, 599, 686, 929
HpyF10VI GCNNNNNNNGC 9 cut(s) 92, 374, 383, 554, 563, 985, 1227, 1236, 1262
HpyF3I CTNAG 6 cut(s) 119, 603, 660, 1089, 1175, 1275
HpySE526I ACGT 3 cut(s) 243, 415, 1053
Hsp92I GRCGYC 1 cut(s) 722
Hsp92II CATG 6 cut(s) 14, 230, 434, 761, 806, 880
HspAI GCGC 2 cut(s) 960, 986
Ksp22I TGATCA 2 cut(s) 435, 1209
Kzo9I GATC 4 cut(s) 435, 478, 490, 1209
LmnI GCTCC 7 cut(s) 76, 130, 301, 698, 1163, 1193, 1262
Lsp1109I GCAGC 4 cut(s) 73, 560, 941, 1200
LweI GCATC 4 cut(s) 373, 385, 436, 520
MaeI CTAG 4 cut(s) 110, 581, 588, 950
MaeII ACGT 3 cut(s) 243, 415, 1053
MaeIII GTNAC 2 cut(s) 307, 850
MalI GATC 4 cut(s) 437, 480, 492, 1211
MboI GATC 4 cut(s) 435, 478, 490, 1209
MboII GAAGA 4 cut(s) 721, 740, 1093, 1191
MhlI GDGCHC 4 cut(s) 127, 568, 703, 1267
MlsI TGGCCA 1 cut(s) 894
MluCI AATT 1 cut(s) 918
MluNI TGGCCA 1 cut(s) 894
MlyI GAGTC 3 cut(s) 166, 582, 1224
MmeI TCCRAC 1 cut(s) 466
Mox20I TGGCCA 1 cut(s) 894
MroXI GAANNNNTTC 1 cut(s) 1136
MscI TGGCCA 1 cut(s) 894
MseI TTAA 3 cut(s) 182, 333, 716
Msp20I TGGCCA 1 cut(s) 894
MspA1I CMGCKG 1 cut(s) 1191
MspI CCGG 6 cut(s) 74, 143, 696, 1047, 1227, 1240
MspR9I CCNGG 2 cut(s) 215, 696
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 2 cut(s) 988, 1019
MwoI GCNNNNNNNGC 9 cut(s) 92, 374, 383, 554, 563, 985, 1227, 1236, 1262
NciI CCSGG 1 cut(s) 696
NdeII GATC 4 cut(s) 435, 478, 490, 1209
NlaIII CATG 6 cut(s) 14, 230, 434, 761, 806, 880
NlaIV GGNNCC 5 cut(s) 48, 57, 126, 1139, 1264
NmuCI GTSAC 2 cut(s) 307, 850
NspI RCATGY 1 cut(s) 434
PagI TCATGA 1 cut(s) 757
PaqCI CACCTGC 1 cut(s) 506
PceI AGGCCT 1 cut(s) 906
PdmI GAANNNNTTC 1 cut(s) 1136
PfeI GAWTC 4 cut(s) 16, 137, 1147, 1223
PflMI CCANNNNNTGG 1 cut(s) 785
PkrI GCNGC 7 cut(s) 88, 514, 550, 931, 1072, 1187, 1190
PleI GAGTC 3 cut(s) 166, 581, 1223
PpsI GAGTC 3 cut(s) 166, 581, 1223
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 5 cut(s) 48, 57, 126, 1139, 1264
PspPI GGNCC 4 cut(s) 56, 71, 693, 1254
PspPPI RGGWCCY 1 cut(s) 56
PstI CTGCAG 1 cut(s) 931
RsaI GTAC 2 cut(s) 665, 838
RsaNI GTAC 2 cut(s) 664, 837
SaqAI TTAA 3 cut(s) 182, 333, 716
SatI GCNGC 7 cut(s) 87, 513, 549, 930, 1071, 1186, 1189
Sau3AI GATC 4 cut(s) 435, 478, 490, 1209
Sau96I GGNCC 4 cut(s) 56, 71, 693, 1254
SchI GAGTC 3 cut(s) 166, 582, 1224
ScrFI CCNGG 2 cut(s) 215, 696
SduI GDGCHC 4 cut(s) 127, 568, 703, 1267
SfaNI GCATC 4 cut(s) 373, 385, 436, 520
SfcI CTRYAG 2 cut(s) 272, 927
SgrAI CRCCGGYG 1 cut(s) 1046
SinI GGWCC 2 cut(s) 56, 71
SmlI CTYRAG 2 cut(s) 345, 1249
SmoI CTYRAG 2 cut(s) 345, 1249
Sse9I AATT 1 cut(s) 918
SseBI AGGCCT 1 cut(s) 906
SsiI CCGC 6 cut(s) 512, 834, 1019, 1071, 1186, 1191
SspMI CTAG 4 cut(s) 110, 581, 588, 950
StuI AGGCCT 1 cut(s) 906
StyD4I CCNGG 2 cut(s) 213, 694
StyI CCWWGG 3 cut(s) 409, 559, 580
TaaI ACNGT 2 cut(s) 505, 841
TaiI ACGT 3 cut(s) 246, 418, 1056
TaqI TCGA 7 cut(s) 154, 175, 381, 477, 790, 991, 1150
TasI AATT 1 cut(s) 918
TatI WGTACW 1 cut(s) 663
TauI GCSGC 3 cut(s) 515, 1073, 1188
TfiI GAWTC 4 cut(s) 16, 137, 1147, 1223
Tru1I TTAA 3 cut(s) 182, 333, 716
Tru9I TTAA 3 cut(s) 182, 333, 716
TscAI CASTG 4 cut(s) 273, 673, 739, 846
TseFI GTSAC 2 cut(s) 307, 850
TseI GCWGC 4 cut(s) 86, 548, 929, 1188
Tsp45I GTSAC 2 cut(s) 307, 850
TspDTI ATGAA 3 cut(s) 447, 746, 774
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 4 cut(s) 273, 673, 739, 846
Van91I CCANNNNNTGG 1 cut(s) 785
VneI GTGCAC 1 cut(s) 564
VpaK11BI GGWCC 2 cut(s) 56, 71
XagI CCTNNNNNAGG 2 cut(s) 348, 911
XapI RAATTY 1 cut(s) 918
XceI RCATGY 1 cut(s) 434
XmaJI CCTAGG 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 1136
XspI CTAG 4 cut(s) 110, 581, 588, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.