Rorug06G0061800

nitronate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013392
Physical Location & Seq
Forward (+)
8254239 .. 8254694
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0061800.1

Sequence Viewer

Length: 456 bp
ATGGAGGATTTATTCTTTTGGGTTCGCATCACAAATATGGCGCTGGCATATGAACAAAGGAATACTATTGCAAACGTTGCTACTGCTGCAGGTAAATTCATTGAACTGGACCAAAAGCTTTTTGATGCAACTGGAGAGATTAGTGTAAGGGTTTCACATGCAATTTCGAAACCTTTTTTCATGCAAAAAACCCTAAAGTTCGCCAAAGGGATTGAGCAAGAGGTTCACTTCTTCTTTGAAAACCTCGTGGGCAAATGCAAGACATGTCAGTGTGTGTATCATAAGGGAGAAGCATGCAATGGTGAAACTGCAACTCCACCGGTCACTGCTACCCCATTACCGGCGGCAAGAAAACTAGAGCTCAATGGCTCATTTTTAGGGTTTTCAGGAAATCAATTCATGGATGGAATGTTTCACTTCCAAGGTCTCACTACCCCTATTCTTCCGCCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NMO

Protein Analysis

151

Amino Acids

16.8

Weight (kDa)

6.89

Isoelectric Point (pI)

23.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64250 AT5G64250
fragaria_vesca FvH4_5g07040 FvH4_5g07040
malus_domestica MD05G1043200.v1.1
prunus_persica Prupe.8G064000_v2.0.a1
pyrus_communis pycom05g03570
rosa_chinensis RchiOBHm_Chr6g0271551 RchiOBHm_Chr6g0271711
rosa_laevigata RLG00000013721 RLG00000013734
rosa_multiflora Rmu_sc0002396.1_g000003
rosa_roxburghii Rroxscaffold_7G00196850
rosa_rugosa Rorug06G0061800
rosa_samantha Rh6AG180600 Rh6BG186800 Rh6DG172300
rosa_wichuraiana Rw6G015510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AciI CCGC 2 cut(s) 344, 446
AclI AACGTT 1 cut(s) 75
AcsI RAATTY 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 340
AflIII ACRYGT 1 cut(s) 263
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 2 cut(s) 104, 239
AluBI AGCT 2 cut(s) 118, 361
AluI AGCT 2 cut(s) 118, 361
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 319
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 363
BauI CACGAG 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 2 cut(s) 87, 345
BlsI GCNGC 2 cut(s) 88, 346
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmsI GCATC 2 cut(s) 36, 115
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 421
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 3 cut(s) 319, 340, 448
Bse1I ACTGG 2 cut(s) 111, 136
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 2 cut(s) 111, 136
BseXI GCAGC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 3 cut(s) 320, 341, 449
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 363
BspACI CCGC 2 cut(s) 344, 446
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 3 cut(s) 319, 340, 448
BsrI ACTGG 2 cut(s) 111, 136
BssAI RCCGGY 3 cut(s) 319, 340, 448
BssECI CCNNGG 1 cut(s) 421
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 421
Bst2BI CACGAG 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 45, 295
BstF5I GGATG 1 cut(s) 409
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 431
BstMWI GCNNNNNNNGC 2 cut(s) 77, 86
BstNSI RCATGY 3 cut(s) 161, 267, 297
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 275, 324
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 45, 295
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 3 cut(s) 319, 340, 448
Cfr13I GGNCC 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 319
CviAII CATG 5 cut(s) 158, 181, 264, 294, 400
CviJI RGCY 3 cut(s) 118, 361, 369
CviKI_1 RGCY 3 cut(s) 118, 361, 369
EciI GGCGGA 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 5 cut(s) 161, 184, 267, 297, 403
FaiI YATR 9 cut(s) 38, 49, 51, 159, 182, 265, 282, 295, 401
FatI CATG 5 cut(s) 157, 180, 263, 293, 399
FauNDI CATATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 87, 345
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 2 cut(s) 87, 345
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 87, 345
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 44
HapII CCGG 3 cut(s) 320, 341, 449
HhaI GCGC 1 cut(s) 43
Hin1II CATG 5 cut(s) 161, 184, 267, 297, 403
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 116
HpaII CCGG 3 cut(s) 320, 341, 449
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 8 cut(s) 71, 89, 128, 161, 184, 258, 297, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 86
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 5 cut(s) 161, 184, 267, 297, 403
HspAI GCGC 1 cut(s) 41
LpnPI CCDG 7 cut(s) 29, 75, 92, 117, 333, 354, 372
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 36, 115
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 322
MboII GAAGA 2 cut(s) 223, 434
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 95, 162, 395
MnlI CCTC 2 cut(s) 214, 254
MslI CAYNNNNRTG 2 cut(s) 35, 268
MspI CCGG 3 cut(s) 320, 341, 449
MwoI GCNNNNNNNGC 2 cut(s) 77, 86
NdeI CATATG 1 cut(s) 49
NlaIII CATG 5 cut(s) 161, 184, 267, 297, 403
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 3 cut(s) 161, 267, 297
NspV TTCGAA 1 cut(s) 167
PaeI GCATGC 1 cut(s) 297
PciI ACATGT 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 2 cut(s) 88, 346
PscI ACATGT 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 363
Psp1406I AACGTT 1 cut(s) 75
PspPI GGNCC 1 cut(s) 109
PstI CTGCAG 1 cut(s) 91
RseI CAYNNNNRTG 2 cut(s) 35, 268
SacI GAGCTC 1 cut(s) 363
SatI GCNGC 2 cut(s) 87, 345
Sau96I GGNCC 1 cut(s) 109
SduI GDGCHC 1 cut(s) 363
SetI ASST 8 cut(s) 78, 94, 120, 175, 225, 246, 363, 427
SfaNI GCATC 2 cut(s) 36, 115
SfcI CTRYAG 1 cut(s) 87
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 2 cut(s) 35, 268
SphI GCATGC 1 cut(s) 297
Sse9I AATT 3 cut(s) 95, 162, 395
SsiI CCGC 2 cut(s) 344, 446
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 363
StyI CCWWGG 1 cut(s) 421
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 167
TasI AATT 3 cut(s) 95, 162, 395
TauI GCSGC 1 cut(s) 347
TscAI CASTG 2 cut(s) 275, 331
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 4 cut(s) 66, 88, 169, 388
TspRI CASTG 2 cut(s) 275, 331
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 95
XceI RCATGY 3 cut(s) 161, 267, 297
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.