Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002441.1

Orthogroup ID

OG0014581

Physical Location & Seq

Genomic Coordinates Forward (+)

58252 .. 61769

Gene Structure 3518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atgagagagaatcaatttcgagctgtaccaatcttcttcttcttgttcttcttcgtcttcaatggctgtgatgcgctttacggaccatcatcaccagtgcttcagctgactcccaccaacttcaagtccaaggttctggactcgaaccgagttgttctggttgaattctttgcgccgtggtgtggacattgtcaagctctgactcccatatgggagaaagcggctactgtgttgaagggtgtggcaaccgtagctgcccttgatgctgatgcgcacaagtcccttgctcaggaatatgggattagaggattcccgacaataaaggtgttcgtacctggacagcctccagttgattatcagggagcgagagaagtgaaacccattgcagaatttgcagtcaaacagattaaggcattattgaaggaccgcttaagtggaaaagcaactggaggatcaagtgaaaaacctgaacctaatgcttcagtagaactaaattcccagaattttgatgaattagttgttaaaagcaaagatctctgggttgtggagttttttgcgccttggtgcgggcactgtaaaaaattggcacctgagtggaagaaggctgccaaaaacttgaagggaaaggtgaagttgggacacgttgactgtgatgcagagaagtctcttatgagcaggttcaatgttcaaggattcccaacaatattggtatttggagctgacaaagatagcccagtaccttatgagggtgcgaggactgcttcagcaattgaatcattttctctcgaacaactagaaacaaatgttgcacctcctgaagtgactgagctaactggccctgatgtattggaagagaaatgtggttcggccgccatctgttttgtggcttttctacctgatatcttggattccaaggcagaagggaggaacaagtaccttcagcagttattatctgttgcagagaagttcaagaagagtccgtatagctatgtctgggcagcagctggtaagcagcaagacctcgagaatcgcgtaggtgttggtggttatggatatccagcattggttgccttaaatgtgaaaaaaggtgcttatgccccacttaagagtgccttcgagcttgatcagatcatcgaatttgtgagagaagctgggcgtggtggaaagggaaacttgcctctgaacggcacccctaacattgtgaagagcgaaccatgggatggtaaagacggagagatcattgaagaggatgagttctcccttgacgaactgatgggggaagatactaagagcaaggatgaattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030312 GO:0031974 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070013 GO:0071944 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

435

Amino Acids

47.7

Weight (kDa)

5.46

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	33 - 131	1.1e-29	Thioredoxin
Thioredoxin	PF00085	162 - 260	1.2e-30	Thioredoxin
Thioredoxin_2	PF13098	178 - 251	2.7e-06	Thioredoxin-like domain
Thioredoxin_6	PF13848	195 - 382	2.5e-10	Thioredoxin-like domain
Thioredox_PDIA6_C	PF24541	268 - 382	8.7e-09	PDIA6-like, C-terminal thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04980 AT2G32920
fragaria_vesca	FvH4_6g41940
malus_domestica	MD09G1116100.v1.1 MD17G1107800.v1.1
prunus_persica	Prupe.3G208600_v2.0.a1
pyrus_communis	pycom09g04050
rosa_chinensis	RchiOBHm_Chr2g0157821
rosa_laevigata	RLG00000021023
rosa_multiflora	Rmu_sc0002441.1_g000014
rosa_roxburghii	Rroxscaffold_2G00091920
rosa_rugosa	Rorug02G0464000
rosa_samantha	Rh2AG529300 Rh2BG543400 Rh2CG513600 Rh2DG552200
rosa_wichuraiana	Rw2G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	666
AccB1I	GGYRCC	2 cut(s)	586, 1187
AccB7I	CCANNNNNTGG	1 cut(s)	1220
AccII	CGCG	1 cut(s)	1032
AciI	CCGC	4 cut(s)	221, 427, 567, 870
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	5 cut(s)	164, 389, 493, 502, 1136
AcuI	CTGAAG	5 cut(s)	86, 465, 747, 837, 923
AfaI	GTAC	4 cut(s)	27, 333, 738, 935
AfiI	CCNNNNNNNGG	6 cut(s)	182, 289, 566, 746, 1184, 1220
AflII	CTTAAG	2 cut(s)	430, 1103
AflIII	ACRYGT	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	334
AleI	CACNNNNGTG	1 cut(s)	592
Alw26I	GTCTC	1 cut(s)	669
AlwI	GGATC	1 cut(s)	460
AlwNI	CAGNNNCTG	1 cut(s)	1004
Ama87I	CYCGRG	1 cut(s)	1022
AoxI	GGCC	2 cut(s)	835, 867
ApeKI	GCWGC	5 cut(s)	254, 605, 998, 1001, 1012
ApoI	RAATTY	5 cut(s)	164, 389, 493, 502, 1136
AspLEI	GCGC	4 cut(s)	76, 175, 274, 559
AspS9I	GGNCC	3 cut(s)	83, 424, 836
AsuHPI	GGTGA	2 cut(s)	84, 640
AvaI	CYCGRG	1 cut(s)	1022
AvaII	GGWCC	2 cut(s)	83, 424
BaeGI	GKGCMC	1 cut(s)	573
BanI	GGYRCC	2 cut(s)	586, 1187
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	5 cut(s)	241, 592, 1010, 1013, 1024
BccI	CCATC	4 cut(s)	94, 881, 1214, 1267
BceAI	ACGGC	2 cut(s)	160, 1201
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	1123
BcoDI	GTCTC	1 cut(s)	669
BfaI	CTAG	1 cut(s)	794
BfrI	CTTAAG	2 cut(s)	430, 1103
BfuAI	ACCTGC	1 cut(s)	666
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	7 cut(s)	222, 255, 606, 870, 999, 1002, 1013
BlsI	GCNGC	7 cut(s)	223, 256, 607, 871, 1000, 1003, 1014
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	2 cut(s)	83, 424
BmeT110I	CYCGRG	1 cut(s)	1022
BmgT120I	GGNCC	3 cut(s)	83, 424, 836
BmiI	GGNNCC	2 cut(s)	588, 1189
BmrFI	CCNGG	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	4 cut(s)	61, 253, 259, 643
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	49
BpmI	CTGGAG	2 cut(s)	330, 468
Bpu10I	CCTNAGC	1 cut(s)	288
BsaJI	CCNNGG	5 cut(s)	129, 176, 560, 912, 1214
Bsc4I	CCNNNNNNNGG	6 cut(s)	182, 289, 566, 746, 1184, 1220
Bse1I	ACTGG	5 cut(s)	95, 347, 451, 734, 838
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	5 cut(s)	129, 176, 560, 912, 1214
BseGI	GGATG	3 cut(s)	1225, 1255, 1303
BseLI	CCNNNNNNNGG	6 cut(s)	182, 289, 566, 746, 1184, 1220
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	302, 582, 816
BseNI	ACTGG	5 cut(s)	95, 347, 451, 734, 838
BseSI	GKGCMC	1 cut(s)	573
BseX3I	CGGCCG	1 cut(s)	867
BseXI	GCAGC	5 cut(s)	241, 592, 1010, 1013, 1024
BseYI	CCCAGC	1 cut(s)	1151
Bsh1236I	CGCG	1 cut(s)	1032
Bsh1285I	CGRYCG	1 cut(s)	870
BshFI	GGCC	2 cut(s)	837, 869
BshNI	GGYRCC	2 cut(s)	586, 1187
BsiEI	CGRYCG	1 cut(s)	870
BsiHKCI	CYCGRG	1 cut(s)	1022
BslFI	GGGAC	2 cut(s)	265, 651
BslI	CCNNNNNNNGG	6 cut(s)	182, 289, 566, 746, 1184, 1220
BsmAI	GTCTC	1 cut(s)	669
BsmFI	GGGAC	2 cut(s)	265, 651
BsnI	GGCC	2 cut(s)	837, 869
BsoBI	CYCGRG	1 cut(s)	1022
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	452, 532, 1123, 1128, 1236
Bsp19I	CCATGG	1 cut(s)	1214
BspACI	CCGC	4 cut(s)	221, 427, 567, 870
BspANI	GGCC	2 cut(s)	837, 869
BspCNI	CTCAG	3 cut(s)	301, 583, 817
BspFNI	CGCG	1 cut(s)	1032
BspLI	GGNNCC	2 cut(s)	588, 1189
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	1 cut(s)	460
BspQI	GCTCTTC	1 cut(s)	1199
BspT107I	GGYRCC	2 cut(s)	586, 1187
BspTI	CTTAAG	2 cut(s)	430, 1103
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	5 cut(s)	95, 347, 451, 734, 838
BssECI	CCNNGG	5 cut(s)	129, 176, 560, 912, 1214
BssMI	GATC	5 cut(s)	452, 532, 1123, 1128, 1236
BssT1I	CCWWGG	4 cut(s)	129, 560, 912, 1214
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	4 cut(s)	229, 250, 575, 650
Bst6I	CTCTTC	4 cut(s)	846, 968, 1199, 1239
BstAFI	CTTAAG	2 cut(s)	430, 1103
BstAPI	GCANNNNNTGC	2 cut(s)	392, 1067
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	4 cut(s)	288, 591, 825, 1287
BstDSI	CCRYGG	2 cut(s)	176, 1214
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	1225, 1255, 1303
BstFNI	CGCG	1 cut(s)	1032
BstHHI	GCGC	4 cut(s)	76, 175, 274, 559
BstKTI	GATC	5 cut(s)	455, 535, 1126, 1131, 1239
BstMAI	GTCTC	1 cut(s)	669
BstMBI	GATC	5 cut(s)	452, 532, 1123, 1128, 1236
BstMCI	CGRYCG	1 cut(s)	870
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 263, 392, 758, 1067
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	573
BstUI	CGCG	1 cut(s)	1032
BstV1I	GCAGC	5 cut(s)	241, 592, 1010, 1013, 1024
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	532
BstZI	CGGCCG	1 cut(s)	867
BsuRI	GGCC	2 cut(s)	837, 869
BtgI	CCRYGG	2 cut(s)	176, 1214
BtsCI	GGATG	3 cut(s)	1225, 1255, 1303
BtsIMutI	CAGTG	2 cut(s)	102, 571
BveI	ACCTGC	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	569
CaiI	CAGNNNCTG	1 cut(s)	1004
CfoI	GCGC	4 cut(s)	76, 175, 274, 559
Cfr13I	GGNCC	3 cut(s)	83, 424, 836
Csp6I	GTAC	4 cut(s)	26, 332, 737, 934
CviAII	CATG	1 cut(s)	1215
CviQI	GTAC	4 cut(s)	26, 332, 737, 934
DdeI	CTNAG	4 cut(s)	288, 591, 825, 1287
DpnI	GATC	5 cut(s)	454, 534, 1125, 1130, 1238
DpnII	GATC	5 cut(s)	452, 532, 1123, 1128, 1236
EaeI	YGGCCR	1 cut(s)	867
EagI	CGGCCG	1 cut(s)	867
Eam1104I	CTCTTC	4 cut(s)	846, 968, 1199, 1239
EarI	CTCTTC	4 cut(s)	846, 968, 1199, 1239
EclXI	CGGCCG	1 cut(s)	867
Eco130I	CCWWGG	4 cut(s)	129, 560, 912, 1214
Eco32I	GATATC	2 cut(s)	901, 1055
Eco47I	GGWCC	2 cut(s)	83, 424
Eco52I	CGGCCG	1 cut(s)	867
Eco57I	CTGAAG	5 cut(s)	86, 465, 747, 837, 923
Eco88I	CYCGRG	1 cut(s)	1022
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	334
EcoRV	GATATC	2 cut(s)	901, 1055
EcoT14I	CCWWGG	4 cut(s)	129, 560, 912, 1214
ErhI	CCWWGG	4 cut(s)	129, 560, 912, 1214
FaeI	CATG	1 cut(s)	1218
FalI	AAGNNNNNCTT	6 cut(s)	413, 445, 1097, 1129, 1157, 1189
FaqI	GGGAC	2 cut(s)	265, 651
FatI	CATG	1 cut(s)	1214
FauI	CCCGC	1 cut(s)	560
FauNDI	CATATG	1 cut(s)	209
FbaI	TGATCA	1 cut(s)	1123
Fnu4HI	GCNGC	7 cut(s)	222, 255, 606, 870, 999, 1002, 1013
FokI	GGATG	2 cut(s)	1232, 1262
Fsp4HI	GCNGC	7 cut(s)	222, 255, 606, 870, 999, 1002, 1013
FspAI	RTGCGCAY	1 cut(s)	273
FspBI	CTAG	1 cut(s)	794
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	4 cut(s)	75, 174, 273, 558
GluI	GCNGC	7 cut(s)	222, 255, 606, 870, 999, 1002, 1013
GsaI	CCCAGC	1 cut(s)	1155
GsuI	CTGGAG	2 cut(s)	330, 468
HaeIII	GGCC	2 cut(s)	837, 869
HhaI	GCGC	4 cut(s)	76, 175, 274, 559
Hin1II	CATG	1 cut(s)	1218
Hin6I	GCGC	4 cut(s)	74, 173, 272, 557
HinP1I	GCGC	4 cut(s)	74, 173, 272, 557
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HphI	GGTGA	2 cut(s)	84, 640
Hpy166II	GTNNAC	2 cut(s)	185, 646
Hpy188I	TCNGA	3 cut(s)	201, 1128, 1182
Hpy188III	TCNNGA	7 cut(s)	137, 290, 313, 785, 815, 970, 1024
Hpy8I	GTNNAC	2 cut(s)	185, 646
HpyAV	CCTTC	7 cut(s)	229, 415, 595, 613, 914, 947, 1123
HpyCH4III	ACNGT	4 cut(s)	229, 250, 575, 650
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	5 cut(s)	386, 395, 656, 809, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 263, 392, 758, 1067
HpyF3I	CTNAG	4 cut(s)	288, 591, 825, 1287
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	1 cut(s)	1218
HspAI	GCGC	4 cut(s)	74, 173, 272, 557
Ksp22I	TGATCA	1 cut(s)	1123
Kzo9I	GATC	5 cut(s)	452, 532, 1123, 1128, 1236
LguI	GCTCTTC	1 cut(s)	1199
LmnI	GCTCC	2 cut(s)	362, 716
Lsp1109I	GCAGC	5 cut(s)	241, 592, 1010, 1013, 1024
LweI	GCATC	4 cut(s)	61, 253, 259, 643
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	5 cut(s)	454, 534, 1125, 1130, 1238
MboI	GATC	5 cut(s)	452, 532, 1123, 1128, 1236
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	573
MlyI	GAGTC	4 cut(s)	103, 134, 196, 985
MseI	TTAA	5 cut(s)	408, 431, 522, 1073, 1104
MslI	CAYNNNNRTG	1 cut(s)	592
MspA1I	CMGCKG	2 cut(s)	106, 1004
MspCI	CTTAAG	2 cut(s)	430, 1103
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	5 cut(s)	251, 263, 392, 758, 1067
NcoI	CCATGG	1 cut(s)	1214
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	5 cut(s)	452, 532, 1123, 1128, 1236
NlaIII	CATG	1 cut(s)	1218
NlaIV	GGNNCC	2 cut(s)	588, 1189
NmuCI	GTSAC	1 cut(s)	820
NsbI	TGCGCA	1 cut(s)	273
OliI	CACNNNNGTG	1 cut(s)	592
PaeR7I	CTCGAG	1 cut(s)	1022
PciSI	GCTCTTC	1 cut(s)	1199
PcsI	WCGNNNNNNNCGW	1 cut(s)	1029
PfeI	GAWTC	6 cut(s)	10, 309, 693, 773, 908, 1027
PflFI	GACNNNGTC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	1220
PkrI	GCNGC	7 cut(s)	223, 256, 607, 871, 1000, 1003, 1014
PleI	GAGTC	4 cut(s)	103, 134, 196, 984
PpsI	GAGTC	4 cut(s)	103, 134, 196, 984
Psp6I	CCWGG	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	1151
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	588, 1189
PspPI	GGNCC	3 cut(s)	83, 424, 836
PstNI	CAGNNNCTG	1 cut(s)	1004
PsuI	RGATCY	1 cut(s)	532
PsyI	GACNNNGTC	1 cut(s)	189
PvuII	CAGCTG	2 cut(s)	106, 1004
RsaI	GTAC	4 cut(s)	27, 333, 738, 935
RsaNI	GTAC	4 cut(s)	26, 332, 737, 934
RseI	CAYNNNNRTG	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	1199
SaqAI	TTAA	5 cut(s)	408, 431, 522, 1073, 1104
SatI	GCNGC	7 cut(s)	222, 255, 606, 870, 999, 1002, 1013
Sau3AI	GATC	5 cut(s)	452, 532, 1123, 1128, 1236
Sau96I	GGNCC	3 cut(s)	83, 424, 836
SchI	GAGTC	4 cut(s)	103, 134, 196, 985
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	4 cut(s)	61, 253, 259, 643
Sfr274I	CTCGAG	1 cut(s)	1022
SinI	GGWCC	2 cut(s)	83, 424
SlaI	CTCGAG	1 cut(s)	1022
SmiMI	CAYNNNNRTG	1 cut(s)	592
SmlI	CTYRAG	3 cut(s)	430, 1022, 1103
SmoI	CTYRAG	3 cut(s)	430, 1022, 1103
SsiI	CCGC	4 cut(s)	221, 427, 567, 870
SspI	AATATT	1 cut(s)	705
SspMI	CTAG	1 cut(s)	794
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	4 cut(s)	129, 560, 912, 1214
TaaI	ACNGT	4 cut(s)	229, 250, 575, 650
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	6 cut(s)	19, 143, 786, 1023, 1116, 1134
TauI	GCSGC	2 cut(s)	224, 872
TfiI	GAWTC	6 cut(s)	10, 309, 693, 773, 908, 1027
Tru1I	TTAA	5 cut(s)	408, 431, 522, 1073, 1104
Tru9I	TTAA	5 cut(s)	408, 431, 522, 1073, 1104
TscAI	CASTG	2 cut(s)	102, 578
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	5 cut(s)	254, 605, 998, 1001, 1012
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	3 cut(s)	96, 969, 1245
TspRI	CASTG	2 cut(s)	102, 578
Tth111I	GACNNNGTC	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	1220
Vha464I	CTTAAG	2 cut(s)	430, 1103
VpaK11BI	GGWCC	2 cut(s)	83, 424
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	5 cut(s)	164, 389, 493, 502, 1136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	880
XhoI	CTCGAG	1 cut(s)	1022
XspI	CTAG	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.