Rmu_sc0002516.1_g000001

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002516.1
OG0014530
Physical Location & Seq
Forward (+)
1 .. 956
956 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 820 bp
caggttttggcgagcaaagaaagcgaggaaggagattgagaaaatactggttaaagtagtaagagagaagaagaagcacatagaagaaagcaagaaagaagaagaagagcaaggagggatgttggtgtctcaattagtggctgggatgattcgaggagaaattaccgaagaggaggttgttgataatgtggtcttgctggtgttcgcagttcatgatactacttttgccattgccatgacattcaaaatgttggctcagcatccatattgccacagtttcctgcttaaaggattgtatgctcttcaattcagtccaaggtcatcaaagtcagaacatgctgagataatgagaagcaaaaaacctggtgatcaaaatctgacattggatgatacgaagaacatgaagtacacctggcaggttgatcgcgaaagcatgcgtctcttccctcctatcttcggctctttcaggaaagccattgctgatattgaatatgaaggattcactattccacaaggatggaaggtgttgtggacaacatatggaacacattacaattcagaatattttgaagatccttcgagtttcaatccaagccggtttgaggagcatgttccaccatatgcctttctggcattcggaggagggccaagagtttgtgcagggtaccaacttgctaagctgaacgtcctcattttcgtgcatttcatggtgactcgttatgactggtctttgctatatcctgatgagcctatatccatggatcctcttccatttccttcatatggaatgcctattaaaattactccaaagttgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

272

Amino Acids

31.55

Weight (kDa)

7.88

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 256 3.9e-40 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 407
Acc65I GGTACC 1 cut(s) 664
AccB1I GGYRCC 1 cut(s) 664
AccII CGCG 1 cut(s) 427
AclWI GGATC 3 cut(s) 567, 756, 769
AfaI GTAC 2 cut(s) 408, 666
AfiI CCNNNNNNNGG 3 cut(s) 456, 602, 783
AgsI TTSAA 5 cut(s) 245, 306, 489, 570, 587
AjnI CCWGG 2 cut(s) 362, 411
AluBI AGCT 1 cut(s) 680
AluI AGCT 1 cut(s) 680
Alw26I GTCTC 2 cut(s) 133, 444
AlwI GGATC 3 cut(s) 567, 756, 769
AoxI GGCC 1 cut(s) 645
Asp718I GGTACC 1 cut(s) 664
AspS9I GGNCC 1 cut(s) 645
AsuHPI GGTGA 2 cut(s) 378, 722
BamHI GGATCC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 664
BccI CCATC 1 cut(s) 511
BcgI CGANNNNNNTGC 2 cut(s) 405, 439
BciT130I CCWGG 2 cut(s) 364, 413
BclI TGATCA 1 cut(s) 368
BcoDI GTCTC 2 cut(s) 133, 444
BfuAI ACCTGC 1 cut(s) 407
BglI GCCNNNNNGGC 1 cut(s) 630
BlpI GCTNAGC 2 cut(s) 256, 676
Bme1390I CCNGG 2 cut(s) 364, 413
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 2 cut(s) 666, 763
BmrFI CCNGG 2 cut(s) 364, 413
BmsI GCATC 1 cut(s) 269
Bpu1102I GCTNAGC 2 cut(s) 256, 676
BsaBI GATNNNNATC 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 315, 757
Bsc4I CCNNNNNNNGG 3 cut(s) 456, 602, 783
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 2 cut(s) 52, 729
Bse3DI GCAATG 2 cut(s) 229, 475
Bse8I GATNNNNATC 1 cut(s) 373
BseBI CCWGG 2 cut(s) 364, 413
BseDI CCNNGG 2 cut(s) 315, 757
BseGI GGATG 5 cut(s) 124, 151, 260, 392, 522
BseJI GATNNNNATC 1 cut(s) 373
BseLI CCNNNNNNNGG 3 cut(s) 456, 602, 783
BseMI GCAATG 2 cut(s) 229, 475
BseMII CTCAG 2 cut(s) 270, 331
BseNI ACTGG 2 cut(s) 52, 729
BseRI GAGGAG 4 cut(s) 169, 186, 618, 655
BseYI CCCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 679
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 1 cut(s) 647
BshNI GGYRCC 1 cut(s) 664
BsiSI CCGG 1 cut(s) 596
BslI CCNNNNNNNGG 3 cut(s) 456, 602, 783
BsmAI GTCTC 2 cut(s) 133, 444
BsmBI CGTCTC 1 cut(s) 444
BsmI GAATGC 2 cut(s) 633, 793
BsnI GGCC 1 cut(s) 647
Bsp143I GATC 4 cut(s) 368, 422, 572, 761
Bsp1720I GCTNAGC 2 cut(s) 256, 676
Bsp19I CCATGG 1 cut(s) 757
Bsp68I TCGCGA 1 cut(s) 427
BspANI GGCC 1 cut(s) 647
BspCNI CTCAG 2 cut(s) 269, 332
BspFNI CGCG 1 cut(s) 427
BspHI TCATGA 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 666, 763
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 3 cut(s) 567, 756, 769
BspQI GCTCTTC 2 cut(s) 100, 307
BspT107I GGYRCC 1 cut(s) 664
BsrDI GCAATG 2 cut(s) 229, 475
BsrFI RCCGGY 1 cut(s) 595
BsrI ACTGG 2 cut(s) 52, 729
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 2 cut(s) 315, 757
BssMI GATC 4 cut(s) 368, 422, 572, 761
BssT1I CCWWGG 2 cut(s) 315, 757
Bst2UI CCWGG 2 cut(s) 364, 413
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 5 cut(s) 100, 163, 307, 447, 772
BstC8I GCNNGC 2 cut(s) 13, 435
BstDEI CTNAG 3 cut(s) 256, 340, 676
BstDSI CCRYGG 1 cut(s) 757
BstF5I GGATG 5 cut(s) 124, 151, 260, 392, 522
BstFNI CGCG 1 cut(s) 427
BstKTI GATC 4 cut(s) 371, 425, 575, 764
BstMAI GTCTC 2 cut(s) 133, 444
BstMBI GATC 4 cut(s) 368, 422, 572, 761
BstMWI GCNNNNNNNGC 2 cut(s) 21, 630
BstNI CCWGG 2 cut(s) 364, 413
BstNSI RCATGY 3 cut(s) 339, 437, 612
BstSCI CCNGG 2 cut(s) 362, 411
BstUI CGCG 1 cut(s) 427
BstX2I RGATCY 2 cut(s) 572, 761
BstXI CCANNNNNNTGG 1 cut(s) 517
BstYI RGATCY 2 cut(s) 572, 761
BsuRI GGCC 1 cut(s) 647
BtgI CCRYGG 1 cut(s) 757
BtsCI GGATG 5 cut(s) 124, 151, 260, 392, 522
BtuMI TCGCGA 1 cut(s) 427
BveI ACCTGC 1 cut(s) 407
Cac8I GCNNGC 2 cut(s) 13, 435
CciI TCATGA 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 1 cut(s) 645
CseI GACGC 1 cut(s) 426
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 2 cut(s) 407, 665
CviAII CATG 8 cut(s) 213, 236, 336, 401, 434, 609, 707, 758
CviJI RGCY 8 cut(s) 141, 255, 460, 474, 595, 647, 680, 749
CviKI_1 RGCY 8 cut(s) 141, 255, 460, 474, 595, 647, 680, 749
CviQI GTAC 2 cut(s) 407, 665
DdeI CTNAG 3 cut(s) 256, 340, 676
DpnI GATC 4 cut(s) 370, 424, 574, 763
DpnII GATC 4 cut(s) 368, 422, 572, 761
Eam1104I CTCTTC 5 cut(s) 100, 163, 307, 447, 772
EarI CTCTTC 5 cut(s) 100, 163, 307, 447, 772
Eco130I CCWWGG 2 cut(s) 315, 757
EcoRII CCWGG 2 cut(s) 362, 411
EcoT14I CCWWGG 2 cut(s) 315, 757
ErhI CCWWGG 2 cut(s) 315, 757
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 8 cut(s) 216, 239, 339, 404, 437, 612, 710, 761
FatI CATG 8 cut(s) 212, 235, 335, 400, 433, 608, 706, 757
FauNDI CATATG 3 cut(s) 539, 620, 782
FbaI TGATCA 1 cut(s) 368
FokI GGATG 5 cut(s) 131, 158, 247, 399, 529
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 647
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 426
Hin1II CATG 8 cut(s) 216, 239, 339, 404, 437, 612, 710, 761
HinfI GANTC 3 cut(s) 149, 499, 713
HpaII CCGG 1 cut(s) 596
HphI GGTGA 2 cut(s) 378, 722
Hpy166II GTNNAC 2 cut(s) 409, 532
Hpy188I TCNGA 4 cut(s) 332, 379, 560, 639
Hpy188III TCNNGA 4 cut(s) 213, 426, 467, 741
Hpy8I GTNNAC 2 cut(s) 409, 532
HpyAV CCTTC 5 cut(s) 23, 489, 515, 586, 787
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 2 cut(s) 660, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 630
HpyF3I CTNAG 3 cut(s) 256, 340, 676
HpySE526I ACGT 1 cut(s) 685
Hsp92II CATG 8 cut(s) 216, 239, 339, 404, 437, 612, 710, 761
KpnI GGTACC 1 cut(s) 668
Ksp22I TGATCA 1 cut(s) 368
Kzo9I GATC 4 cut(s) 368, 422, 572, 761
LguI GCTCTTC 2 cut(s) 100, 307
LmnI GCTCC 1 cut(s) 605
LweI GCATC 1 cut(s) 269
MabI ACCWGGT 1 cut(s) 362
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 1 cut(s) 710
MalI GATC 4 cut(s) 370, 424, 574, 763
MboI GATC 4 cut(s) 368, 422, 572, 761
MflI RGATCY 2 cut(s) 572, 761
MluCI AATT 5 cut(s) 132, 160, 306, 554, 799
MlyI GAGTC 1 cut(s) 707
MseI TTAA 3 cut(s) 52, 286, 796
MslI CAYNNNNRTG 3 cut(s) 234, 515, 696
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 2 cut(s) 364, 413
Mva1269I GAATGC 2 cut(s) 633, 793
MvaI CCWGG 2 cut(s) 364, 413
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 21, 630
NcoI CCATGG 1 cut(s) 757
NdeI CATATG 3 cut(s) 539, 620, 782
NdeII GATC 4 cut(s) 368, 422, 572, 761
NlaIII CATG 8 cut(s) 216, 239, 339, 404, 437, 612, 710, 761
NlaIV GGNNCC 2 cut(s) 666, 763
NmuCI GTSAC 1 cut(s) 710
NruI TCGCGA 1 cut(s) 427
NspI RCATGY 3 cut(s) 339, 437, 612
PaeI GCATGC 1 cut(s) 437
PagI TCATGA 1 cut(s) 212
PciSI GCTCTTC 2 cut(s) 100, 307
PctI GAATGC 2 cut(s) 633, 793
PfeI GAWTC 2 cut(s) 149, 499
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
Psp6I CCWGG 2 cut(s) 362, 411
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 362, 411
PspN4I GGNNCC 2 cut(s) 666, 763
PspPI GGNCC 1 cut(s) 645
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PsuI RGATCY 2 cut(s) 572, 761
RruI TCGCGA 1 cut(s) 427
RsaI GTAC 2 cut(s) 408, 666
RsaNI GTAC 2 cut(s) 407, 665
RseI CAYNNNNRTG 3 cut(s) 234, 515, 696
SapI GCTCTTC 2 cut(s) 100, 307
SaqAI TTAA 3 cut(s) 52, 286, 796
Sau3AI GATC 4 cut(s) 368, 422, 572, 761
Sau96I GGNCC 1 cut(s) 645
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 2 cut(s) 364, 413
SetI ASST 9 cut(s) 6, 178, 321, 365, 414, 421, 526, 682, 688
SexAI ACCWGGT 1 cut(s) 362
SfaNI GCATC 1 cut(s) 269
SmiMI CAYNNNNRTG 3 cut(s) 234, 515, 696
SphI GCATGC 1 cut(s) 437
Sse9I AATT 5 cut(s) 132, 160, 306, 554, 799
SspI AATATT 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 362, 411
StyI CCWWGG 2 cut(s) 315, 757
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 1 cut(s) 688
TaqI TCGA 2 cut(s) 152, 579
TasI AATT 5 cut(s) 132, 160, 306, 554, 799
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 2 cut(s) 149, 499
Tru1I TTAA 3 cut(s) 52, 286, 796
Tru9I TTAA 3 cut(s) 52, 286, 796
TseFI GTSAC 1 cut(s) 710
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 5 cut(s) 201, 417, 508, 695, 769
XceI RCATGY 3 cut(s) 339, 437, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.