Rmu_sc0002521.1_g000002

Polycomb group protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002521.1
OG0009336
Physical Location & Seq
Reverse (-)
2685 .. 5237
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 753 bp
atggccaagttcgctttaggatcggaaccggtggtgggctccctctcatcctcaaagaagagagagtacagagtcaccaaccgcctccaagagggcaagaaacccatatacgccgtcgttttcaacttcatcgactctcgctacttcaacgtcttcgccaccgtcggcggcaaccgggtgactgtgtatgaatgcttagaagggggagtgatagctgtgttgcagtcttacattgatgaagataaggatgagtctttttacactgtgagctgggcatgcaacgttgatggaacaccgttgcttgtggctggaggattcaatggtacgatgcgtgtcattgattgtggcagtgagaagatagacaagagttttgttggccatggtgactcgataaacgaaatcaggactcagccattgaagtcatcacttgtagtgtcagcaagcaaagatgagtcagttcgactatggaatgttcatactggaatatgtattttgatattcgctggagcagggggtcatcgaaatgaagtcttgagtgtggacttccatccatctgatatttatcgcattgcaagttgtggcatggacaacacaattaagatatggtcgatgaaaggtaagacttcatggttgtctcatcctcaatcaaaatctccaattagacaaactgccatgtcctttgatggaagcaccattctcagctgctgtgaggacggcactatttggcgctgggatgtcatggaaaattcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006325 GO:0006342 GO:0006349 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009266 GO:0009409 GO:0009628 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009960 GO:0009987 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031519 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048316 GO:0048367 GO:0048519 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070734 GO:0071514 GO:0071695 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090567 GO:0090568 GO:0090696 GO:0097437 GO:0099402 GO:0140110 GO:1901360 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000014 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

250

Amino Acids

27.59

Weight (kDa)

6.22

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 41 - 247 2.3e-13 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 85 - 164 1.8e-11 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 95 - 164 2.8e-07 WDHD1 first WD40 domain
WD40_Prp19 PF24814 98 - 249 5.8e-19 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 100 - 247 1.6e-24 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 100 - 185 6.4e-11 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 107 - 248 1.2e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 109 - 186 3.2e-06 WDR36/Utp21 second beta-propeller domain
EIF3I PF24805 125 - 237 2e-08 EIF3I
Beta-prop_TEP1_2nd PF25047 140 - 226 1e-06 TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 140 - 244 5.6e-06 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 141 - 246 5e-09 WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 144 - 248 1.6e-07 WDR90/POC16, second beta-propeller
Beta-prop_THOC3 PF25174 172 - 246 5.3e-10 THOC3 beta-propeller domain
WD40 PF00400 172 - 203 1.1e-07 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 172 - 248 9e-09 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 168
AclI AACGTT 1 cut(s) 282
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 2 cut(s) 3, 376
AcsI RAATTY 1 cut(s) 745
AfaI GTAC 2 cut(s) 68, 325
AfiI CCNNNNNNNGG 2 cut(s) 35, 91
AgeI ACCGGT 1 cut(s) 28
AgsI TTSAA 4 cut(s) 124, 148, 319, 418
AluBI AGCT 3 cut(s) 215, 270, 702
AluI AGCT 3 cut(s) 215, 270, 702
Alw26I GTCTC 1 cut(s) 639
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 705
AoxI GGCC 2 cut(s) 3, 376
ApeKI GCWGC 1 cut(s) 702
ApoI RAATTY 1 cut(s) 745
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AsiGI ACCGGT 1 cut(s) 28
AspLEI GCGC 1 cut(s) 729
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 67, 190, 395
BalI TGGCCA 2 cut(s) 5, 378
BanII GRGCYC 1 cut(s) 41
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BbsI GAAGAC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 689
BccI CCATC 4 cut(s) 281, 555, 559, 677
BceAI ACGGC 2 cut(s) 98, 730
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 639
BfoI RGCGCY 1 cut(s) 730
BisI GCNGC 2 cut(s) 169, 703
BlsI GCNGC 2 cut(s) 170, 704
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 27, 40
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 2 cut(s) 330, 525
BpuEI CTTGAG 1 cut(s) 553
BpuMI CCSGG 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 379
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 91
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 5 cut(s) 47, 253, 547, 637, 739
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 2 cut(s) 35, 91
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 2 cut(s) 422, 712
BseNI ACTGG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 689
BseYI CCCAGC 2 cut(s) 270, 729
BshFI GGCC 2 cut(s) 5, 378
BshTI ACCGGT 1 cut(s) 28
BsiSI CCGG 2 cut(s) 29, 175
BslI CCNNNNNNNGG 2 cut(s) 35, 91
BsmAI GTCTC 1 cut(s) 639
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 2 cut(s) 5, 378
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 20
Bsp19I CCATGG 1 cut(s) 379
BspACI CCGC 2 cut(s) 82, 168
BspANI GGCC 2 cut(s) 5, 378
BspCNI CTCAG 2 cut(s) 421, 711
BspLI GGNNCC 2 cut(s) 27, 40
BspPI GGATC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 1 cut(s) 484
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 379
Bst4CI ACNGT 4 cut(s) 163, 184, 265, 297
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 277, 442
BstDEI CTNAG 3 cut(s) 196, 408, 698
BstDSI CCRYGG 1 cut(s) 379
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 5 cut(s) 47, 253, 547, 637, 739
BstH2I RGCGCY 1 cut(s) 730
BstHHI GCGC 1 cut(s) 729
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 639
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 2 cut(s) 11, 276
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 689
BstV2I GAAGAC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 5, 378
BtgI CCRYGG 1 cut(s) 379
BtsCI GGATG 5 cut(s) 47, 253, 547, 637, 739
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 261, 355
Cac8I GCNNGC 2 cut(s) 277, 442
CaiI CAGNNNCTG 1 cut(s) 705
CfoI GCGC 1 cut(s) 729
Cfr10I RCCGGY 1 cut(s) 28
Csp6I GTAC 2 cut(s) 67, 324
CspAI ACCGGT 1 cut(s) 28
CviAII CATG 6 cut(s) 276, 380, 583, 627, 673, 739
CviJI RGCY 8 cut(s) 5, 39, 215, 270, 308, 378, 412, 702
CviKI_1 RGCY 8 cut(s) 5, 39, 215, 270, 308, 378, 412, 702
CviQI GTAC 2 cut(s) 67, 324
DdeI CTNAG 3 cut(s) 196, 408, 698
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
EaeI YGGCCR 2 cut(s) 3, 376
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 6 cut(s) 279, 383, 586, 630, 676, 742
FatI CATG 6 cut(s) 275, 379, 582, 626, 672, 738
Fnu4HI GCNGC 2 cut(s) 169, 703
FokI GGATG 5 cut(s) 34, 260, 534, 624, 746
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 169, 703
GlaI GCGC 1 cut(s) 728
GluI GCNGC 2 cut(s) 169, 703
GsaI CCCAGC 2 cut(s) 274, 733
GsuI CTGGAG 2 cut(s) 330, 525
HaeII RGCGCY 1 cut(s) 730
HaeIII GGCC 2 cut(s) 5, 378
HapII CCGG 2 cut(s) 29, 175
HhaI GCGC 1 cut(s) 729
Hin1II CATG 6 cut(s) 279, 383, 586, 630, 676, 742
Hin6I GCGC 1 cut(s) 727
HinP1I GCGC 1 cut(s) 727
HinfI GANTC 7 cut(s) 72, 134, 251, 315, 386, 406, 452
HpaII CCGG 2 cut(s) 29, 175
HphI GGTGA 3 cut(s) 67, 190, 395
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 2 cut(s) 25, 556
Hpy188III TCNNGA 2 cut(s) 403, 532
Hpy8I GTNNAC 1 cut(s) 541
Hpy99I CGWCG 2 cut(s) 119, 167
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 4 cut(s) 163, 184, 265, 297
HpyCH4IV ACGT 2 cut(s) 150, 282
HpyCH4V TGCA 3 cut(s) 223, 279, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 276
HpyF3I CTNAG 3 cut(s) 196, 408, 698
HpySE526I ACGT 2 cut(s) 150, 282
Hsp92II CATG 6 cut(s) 279, 383, 586, 630, 676, 742
HspAI GCGC 1 cut(s) 727
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 2 cut(s) 44, 506
LpnPI CCDG 9 cut(s) 42, 188, 256, 294, 388, 465, 489, 495, 715
Lsp1109I GCAGC 1 cut(s) 689
LweI GCATC 1 cut(s) 318
MaeII ACGT 2 cut(s) 150, 282
MaeIII GTNAC 3 cut(s) 73, 178, 383
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 4 cut(s) 70, 145, 251, 367
MhlI GDGCHC 1 cut(s) 41
MlsI TGGCCA 2 cut(s) 5, 378
MluCI AATT 3 cut(s) 594, 657, 745
MluNI TGGCCA 2 cut(s) 5, 378
MlyI GAGTC 6 cut(s) 81, 128, 260, 380, 400, 461
MnlI CCTC 7 cut(s) 53, 61, 85, 95, 305, 651, 703
Mox20I TGGCCA 2 cut(s) 5, 378
MscI TGGCCA 2 cut(s) 5, 378
MseI TTAA 2 cut(s) 597, 751
MslI CAYNNNNRTG 1 cut(s) 522
Msp20I TGGCCA 2 cut(s) 5, 378
MspA1I CMGCKG 1 cut(s) 702
MspI CCGG 2 cut(s) 29, 175
MspR9I CCNGG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 11, 276
NciI CCSGG 1 cut(s) 176
NcoI CCATGG 1 cut(s) 379
NdeII GATC 1 cut(s) 20
NlaIII CATG 6 cut(s) 279, 383, 586, 630, 676, 742
NlaIV GGNNCC 2 cut(s) 27, 40
NmuCI GTSAC 3 cut(s) 73, 178, 383
NspI RCATGY 1 cut(s) 279
PaeI GCATGC 1 cut(s) 279
PctI GAATGC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 315
PinAI ACCGGT 1 cut(s) 28
PkrI GCNGC 2 cut(s) 170, 704
PleI GAGTC 6 cut(s) 80, 128, 259, 380, 400, 460
PpsI GAGTC 6 cut(s) 80, 128, 259, 380, 400, 460
Psp1406I AACGTT 1 cut(s) 282
PspFI CCCAGC 2 cut(s) 270, 729
PspN4I GGNNCC 2 cut(s) 27, 40
PstNI CAGNNNCTG 1 cut(s) 705
PvuII CAGCTG 1 cut(s) 702
RsaI GTAC 2 cut(s) 68, 325
RsaNI GTAC 2 cut(s) 67, 324
RseI CAYNNNNRTG 1 cut(s) 522
SaqAI TTAA 2 cut(s) 597, 751
SatI GCNGC 2 cut(s) 169, 703
Sau3AI GATC 1 cut(s) 20
SchI GAGTC 6 cut(s) 81, 128, 260, 380, 400, 461
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 153, 217, 272, 285, 619, 704
SfaNI GCATC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
SphI GCATGC 1 cut(s) 279
Sse9I AATT 3 cut(s) 594, 657, 745
SsiI CCGC 2 cut(s) 82, 168
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 4 cut(s) 163, 184, 265, 297
TaiI ACGT 2 cut(s) 153, 285
TaqI TCGA 5 cut(s) 132, 389, 460, 520, 608
TasI AATT 3 cut(s) 594, 657, 745
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 2 cut(s) 597, 751
Tru9I TTAA 2 cut(s) 597, 751
TscAI CASTG 2 cut(s) 268, 355
TseFI GTSAC 3 cut(s) 73, 178, 383
TseI GCWGC 1 cut(s) 702
Tsp45I GTSAC 3 cut(s) 73, 178, 383
TspDTI ATGAA 7 cut(s) 118, 204, 252, 464, 540, 615, 626
TspRI CASTG 2 cut(s) 268, 355
XagI CCTNNNNNAGG 1 cut(s) 89
XapI RAATTY 1 cut(s) 745
XceI RCATGY 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.