Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002549.1

Orthogroup ID

OG0011186

Physical Location & Seq

Genomic Coordinates Reverse (-)

135339 .. 136268

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgacactccgacctcacactctcttcctccctcaagcctccttaacccccccatctcctaaaccctccaaaaacccttccaactccttcaccccaactctcaattccccaatctacccctccctctccctccaccaccaccaccacccaaccacccccaccgactccggcatcctcttccgcgaaaagctcatctacctcgaaacccacctcaacgtcaatccccgaaaagccctccatctaaacccggacttccgctcctgccccctctcctccgtcaagtccgtcgagcactgcctctcctccatgggcatcgagctctccgccatgggccgcatcctggacatgcacccccagctcctcaccgtggacccccactcccacctctaccccgtcttcgacttcctcctccacgacgcccatatccccttccacgatatccgcaagtccatcatccgctgccccaggctcctcgtctgtgacgtcagcgaccaactccgaccggccttggagttcctgacccaactaggttttaagggcgtgacgtgccagaccacggtcctattggtctcgagcgtcagaggtacccttttgcccaagattgagtatttgcagagtctggggctgagtcacgcggaggtggccaacatggtgataaggtcgccggcgctgttgactctaagcatacacaacaatttcatgccgaaagtcgagtatttagtgcaagagatgaagaaggatgtgaaggagctcaagaggtttccgcagtacttttcgtttagtttggaggggaggattaagcctaggcacagattgttggctgagcacggcttttcgcttccgttgagggacatgttgagggttagtgatggcgagtttaatgctatgttgattgagatgcgattggattgcagaggcttgactcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

309

Amino Acids

35.13

Weight (kDa)

9.03

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	146 - 293	6.2e-32	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03050 AT2G03050
fragaria_vesca	FvH4_4g31180
malus_domestica	MD09G1014700.v1.1 MD16G1071200.v1.1
prunus_persica	Prupe.1G276500_v2.0.a1
pyrus_communis	pycom111g01200 pycom16g06160
rosa_chinensis	RchiOBHm_Chr4g0439561
rosa_laevigata	RLG00000006258
rosa_multiflora	Rmu_co8324741.1_g000001 Rmu_sc0002549.1_g000029 Rmu_sc0007276.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380480
rosa_rugosa	Rorug04G0319900
rosa_samantha	Rh4AG370800 Rh4BG382600 Rh4CG397200 Rh4DG377400
rosa_wichuraiana	Rw4G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	486
Acc65I	GGTACC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	584
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	2 cut(s)	183, 635
AciI	CCGC	8 cut(s)	181, 256, 324, 334, 442, 457, 635, 764
AcoI	YGGCCR	1 cut(s)	642
AcyI	GRCGYC	2 cut(s)	417, 483
AfaI	GTAC	2 cut(s)	586, 770
AfiI	CCNNNNNNNGG	3 cut(s)	340, 367, 556
AflIII	ACRYGT	1 cut(s)	852
AjiI	CACGTC	1 cut(s)	546
AjnI	CCWGG	2 cut(s)	339, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	4 cut(s)	190, 319, 358, 751
AluI	AGCT	4 cut(s)	190, 319, 358, 751
Alw21I	GWGCWC	4 cut(s)	294, 321, 753, 828
Alw26I	GTCTC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	619
Ama87I	CYCGRG	1 cut(s)	571
AoxI	GGCC	3 cut(s)	331, 504, 642
ApeKI	GCWGC	1 cut(s)	459
Asp718I	GGTACC	1 cut(s)	584
AspA2I	CCTAGG	1 cut(s)	803
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	3 cut(s)	331, 370, 559
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	3 cut(s)	82, 355, 664
AvaI	CYCGRG	1 cut(s)	571
AvaII	GGWCC	2 cut(s)	370, 559
AvrII	CCTAGG	1 cut(s)	803
BalI	TGGCCA	1 cut(s)	644
BanI	GGYRCC	1 cut(s)	584
BanII	GRGCYC	2 cut(s)	321, 753
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	4 cut(s)	294, 321, 753, 828
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	4 cut(s)	61, 246, 458, 863
BceAI	ACGGC	1 cut(s)	844
BcgI	CGANNNNNNTGC	4 cut(s)	863, 891, 897, 925
BciT130I	CCWGG	2 cut(s)	341, 466
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	2 cut(s)	527, 804
BfoI	RGCGCY	1 cut(s)	671
BisI	GCNGC	2 cut(s)	334, 460
BlnI	CCTAGG	1 cut(s)	803
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	2 cut(s)	335, 461
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	3 cut(s)	248, 341, 466
Bme18I	GGWCC	2 cut(s)	370, 559
BmeT110I	CYCGRG	1 cut(s)	571
BmgBI	CACGTC	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	331, 370, 559
BmiI	GGNNCC	3 cut(s)	372, 470, 586
BmrFI	CCNGG	3 cut(s)	248, 341, 466
BmsI	GCATC	4 cut(s)	180, 321, 345, 888
BoxI	GACNNNNGTC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	388
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	2 cut(s)	18, 737
BpuMI	CCSGG	1 cut(s)	248
BsaHI	GRCGYC	2 cut(s)	417, 483
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	7 cut(s)	306, 327, 366, 464, 507, 555, 803
BsaXI	ACNNNNNCTCC	6 cut(s)	242, 272, 284, 314, 362, 392
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 367, 556
Bse118I	RCCGGY	2 cut(s)	502, 664
BseBI	CCWGG	2 cut(s)	341, 466
BseDI	CCNNGG	7 cut(s)	306, 327, 366, 464, 507, 555, 803
BseGI	GGATG	4 cut(s)	171, 336, 453, 745
BseLI	CCNNNNNNNGG	3 cut(s)	340, 367, 556
BseMII	CTCAG	2 cut(s)	617, 813
BseRI	GAGGAG	5 cut(s)	262, 292, 350, 398, 461
BseXI	GCAGC	1 cut(s)	446
BseYI	CCCAGC	1 cut(s)	354
Bsh1236I	CGCG	2 cut(s)	183, 635
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	3 cut(s)	333, 506, 644
BshNI	GGYRCC	1 cut(s)	584
BsiEI	CGRYCG	1 cut(s)	503
BsiHKAI	GWGCWC	4 cut(s)	294, 321, 753, 828
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	4 cut(s)	168, 248, 503, 665
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	3 cut(s)	340, 367, 556
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	863
BsnI	GGCC	3 cut(s)	333, 506, 644
Bso31I	GGTCTC	1 cut(s)	574
BsoBI	CYCGRG	1 cut(s)	571
Bsp1286I	GDGCHC	4 cut(s)	294, 321, 753, 828
Bsp1720I	GCTNAGC	1 cut(s)	822
Bsp19I	CCATGG	2 cut(s)	306, 327
BspACI	CCGC	8 cut(s)	181, 256, 324, 334, 442, 457, 635, 764
BspANI	GGCC	3 cut(s)	333, 506, 644
BspCNI	CTCAG	2 cut(s)	618, 814
BspFNI	CGCG	2 cut(s)	183, 635
BspLI	GGNNCC	3 cut(s)	372, 470, 586
BspT107I	GGYRCC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	574
BsrBI	CCGCTC	1 cut(s)	258
BsrFI	RCCGGY	2 cut(s)	502, 664
BssAI	RCCGGY	2 cut(s)	502, 664
BssECI	CCNNGG	7 cut(s)	306, 327, 366, 464, 507, 555, 803
BssNI	GRCGYC	2 cut(s)	417, 483
BssT1I	CCWWGG	4 cut(s)	306, 327, 507, 803
Bst2UI	CCWGG	2 cut(s)	341, 466
Bst4CI	ACNGT	2 cut(s)	367, 559
Bst6I	CTCTTC	2 cut(s)	29, 182
BstACI	GRCGYC	2 cut(s)	417, 483
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	3 cut(s)	626, 680, 822
BstDSI	CCRYGG	4 cut(s)	306, 327, 366, 555
BstF5I	GGATG	4 cut(s)	171, 336, 453, 745
BstFNI	CGCG	2 cut(s)	183, 635
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	670
BstMAI	GTCTC	1 cut(s)	574
BstMCI	CGRYCG	1 cut(s)	503
BstMWI	GCNNNNNNNGC	3 cut(s)	355, 546, 641
BstNI	CCWGG	2 cut(s)	341, 466
BstNSI	RCATGY	2 cut(s)	349, 856
BstPAI	GACNNNNGTC	1 cut(s)	557
BstSCI	CCNGG	3 cut(s)	246, 339, 464
BstUI	CGCG	2 cut(s)	183, 635
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	333, 506, 644
BtgI	CCRYGG	4 cut(s)	306, 327, 366, 555
BtrI	CACGTC	1 cut(s)	546
BtsCI	GGATG	4 cut(s)	171, 336, 453, 745
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	666
CaiI	CAGNNNCTG	1 cut(s)	619
CfoI	GCGC	1 cut(s)	670
Cfr10I	RCCGGY	2 cut(s)	502, 664
Cfr13I	GGNCC	3 cut(s)	331, 370, 559
CseI	GACGC	2 cut(s)	425, 565
Csp6I	GTAC	2 cut(s)	585, 769
CviAII	CATG	6 cut(s)	307, 328, 346, 649, 700, 853
CviQI	GTAC	2 cut(s)	585, 769
DdeI	CTNAG	3 cut(s)	626, 680, 822
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	2 cut(s)	29, 182
EarI	CTCTTC	2 cut(s)	29, 182
EciI	GGCGGA	1 cut(s)	313
Ecl136II	GAGCTC	2 cut(s)	319, 751
Eco130I	CCWWGG	4 cut(s)	306, 327, 507, 803
Eco24I	GRGCYC	2 cut(s)	321, 753
Eco31I	GGTCTC	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	370, 559
Eco53kI	GAGCTC	2 cut(s)	319, 751
Eco88I	CYCGRG	1 cut(s)	571
EcoICRI	GAGCTC	2 cut(s)	319, 751
EcoRII	CCWGG	2 cut(s)	339, 464
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	4 cut(s)	306, 327, 507, 803
EcoT38I	GRGCYC	2 cut(s)	321, 753
ErhI	CCWWGG	4 cut(s)	306, 327, 507, 803
FaeI	CATG	6 cut(s)	310, 331, 349, 652, 703, 856
FaiI	YATR	9 cut(s)	308, 329, 347, 423, 650, 686, 701, 854, 887
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	6 cut(s)	306, 327, 345, 648, 699, 852
Fnu4HI	GCNGC	2 cut(s)	334, 460
FokI	GGATG	4 cut(s)	158, 323, 440, 752
FriOI	GRGCYC	2 cut(s)	321, 753
Fsp4HI	GCNGC	2 cut(s)	334, 460
FspBI	CTAG	2 cut(s)	527, 804
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	2 cut(s)	334, 460
GsaI	CCCAGC	1 cut(s)	358
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	3 cut(s)	333, 506, 644
HapII	CCGG	4 cut(s)	168, 248, 503, 665
HgaI	GACGC	2 cut(s)	425, 565
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	2 cut(s)	417, 483
Hin1II	CATG	6 cut(s)	310, 331, 349, 652, 703, 856
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HinfI	GANTC	5 cut(s)	164, 616, 628, 676, 922
HpaII	CCGG	4 cut(s)	168, 248, 503, 665
HphI	GGTGA	3 cut(s)	82, 355, 664
Hpy166II	GTNNAC	2 cut(s)	370, 675
Hpy188I	TCNGA	3 cut(s)	11, 500, 581
Hpy188III	TCNNGA	3 cut(s)	517, 571, 754
Hpy8I	GTNNAC	2 cut(s)	370, 675
Hpy99I	CGWCG	2 cut(s)	290, 419
HpyAV	CCTTC	5 cut(s)	87, 97, 439, 730, 739
HpyCH4III	ACNGT	2 cut(s)	367, 559
HpyCH4IV	ACGT	3 cut(s)	216, 483, 545
HpyCH4V	TGCA	4 cut(s)	349, 613, 724, 912
HpyF10VI	GCNNNNNNNGC	3 cut(s)	355, 546, 641
HpyF3I	CTNAG	3 cut(s)	626, 680, 822
HpySE526I	ACGT	3 cut(s)	216, 483, 545
Hsp92I	GRCGYC	2 cut(s)	417, 483
Hsp92II	CATG	6 cut(s)	310, 331, 349, 652, 703, 856
HspAI	GCGC	1 cut(s)	668
KpnI	GGTACC	1 cut(s)	588
KroI	GCCGGC	1 cut(s)	664
KroNI	GCCGGC	1 cut(s)	666
LmnI	GCTCC	4 cut(s)	263, 363, 474, 748
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	4 cut(s)	180, 321, 345, 888
MaeI	CTAG	2 cut(s)	527, 804
MaeII	ACGT	3 cut(s)	216, 483, 545
MaeIII	GTNAC	3 cut(s)	479, 541, 629
MbiI	CCGCTC	1 cut(s)	258
MboII	GAAGA	4 cut(s)	16, 169, 388, 745
MhlI	GDGCHC	4 cut(s)	294, 321, 753, 828
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	2 cut(s)	103, 694
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	5 cut(s)	158, 625, 637, 670, 916
MmeI	TCCRAC	3 cut(s)	34, 105, 523
Mox20I	TGGCCA	1 cut(s)	644
MreI	CGCCGGCG	1 cut(s)	664
MroNI	GCCGGC	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	5 cut(s)	44, 534, 798, 879, 928
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	4 cut(s)	168, 248, 503, 665
MspR9I	CCNGG	3 cut(s)	248, 341, 466
MvaI	CCWGG	2 cut(s)	341, 466
MvnI	CGCG	2 cut(s)	183, 635
MwoI	GCNNNNNNNGC	3 cut(s)	355, 546, 641
NaeI	GCCGGC	1 cut(s)	666
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	2 cut(s)	306, 327
NgoMIV	GCCGGC	1 cut(s)	664
NlaIII	CATG	6 cut(s)	310, 331, 349, 652, 703, 856
NlaIV	GGNNCC	3 cut(s)	372, 470, 586
NmuCI	GTSAC	3 cut(s)	479, 541, 629
NspI	RCATGY	2 cut(s)	349, 856
PaeR7I	CTCGAG	1 cut(s)	571
PciI	ACATGT	1 cut(s)	852
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	666
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	335, 461
PleI	GAGTC	5 cut(s)	158, 624, 636, 670, 916
PpsI	GAGTC	5 cut(s)	158, 624, 636, 670, 916
PscI	ACATGT	1 cut(s)	852
PshAI	GACNNNNGTC	1 cut(s)	557
Psp124BI	GAGCTC	2 cut(s)	321, 753
Psp6I	CCWGG	2 cut(s)	339, 464
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	2 cut(s)	339, 464
PspN4I	GGNNCC	3 cut(s)	372, 470, 586
PspPI	GGNCC	3 cut(s)	331, 370, 559
PstNI	CAGNNNCTG	1 cut(s)	619
RsaI	GTAC	2 cut(s)	586, 770
RsaNI	GTAC	2 cut(s)	585, 769
SacI	GAGCTC	2 cut(s)	321, 753
SaqAI	TTAA	5 cut(s)	44, 534, 798, 879, 928
SatI	GCNGC	2 cut(s)	334, 460
Sau96I	GGNCC	3 cut(s)	331, 370, 559
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	5 cut(s)	158, 625, 637, 670, 916
ScrFI	CCNGG	3 cut(s)	248, 341, 466
SduI	GDGCHC	4 cut(s)	294, 321, 753, 828
SfaNI	GCATC	4 cut(s)	180, 321, 345, 888
Sfr274I	CTCGAG	1 cut(s)	571
SgrAI	CRCCGGYG	1 cut(s)	664
SinI	GGWCC	2 cut(s)	370, 559
SlaI	CTCGAG	1 cut(s)	571
SmlI	CTYRAG	3 cut(s)	33, 571, 752
SmoI	CTYRAG	3 cut(s)	33, 571, 752
Sse9I	AATT	2 cut(s)	103, 694
SsiI	CCGC	8 cut(s)	181, 256, 324, 334, 442, 457, 635, 764
SspMI	CTAG	2 cut(s)	527, 804
SstI	GAGCTC	2 cut(s)	321, 753
StyD4I	CCNGG	3 cut(s)	246, 339, 464
StyI	CCWWGG	4 cut(s)	306, 327, 507, 803
TaaI	ACNGT	2 cut(s)	367, 559
TaiI	ACGT	3 cut(s)	219, 486, 548
TaqI	TCGA	6 cut(s)	201, 288, 315, 399, 572, 711
TasI	AATT	2 cut(s)	103, 694
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	1 cut(s)	336
Tru1I	TTAA	5 cut(s)	44, 534, 798, 879, 928
Tru9I	TTAA	5 cut(s)	44, 534, 798, 879, 928
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	3 cut(s)	479, 541, 629
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	3 cut(s)	479, 541, 629
TspDTI	ATGAA	2 cut(s)	688, 746
TspGWI	ACGGA	3 cut(s)	265, 274, 831
TspRI	CASTG	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	370, 559
XceI	RCATGY	2 cut(s)	349, 856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XhoI	CTCGAG	1 cut(s)	571
XmaJI	CCTAGG	1 cut(s)	803
XspI	CTAG	2 cut(s)	527, 804
ZraI	GACGTC	1 cut(s)	484
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.