Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002553.1

Orthogroup ID

OG0003687

Physical Location & Seq

Genomic Coordinates Forward (+)

65214 .. 85538

Gene Structure 20325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3504 bp

atgacaaccgcttggattatggtcggtgatgaccttgaggggctcgtacaggagatgatgggggagaacatattcttctggcatcaagccgttaagctgtcaaactccggggatattgctgcaatccacatagaccaagtagagatgagggtctttttctttcttgactcgcgagcgggtagaagtgaacgaatgcgagggaaagagagtgcttcagtttcgccaaaagagtatcgagaaaattggggttcttggcttctggagctccctcactcagctccgttgttgtcagaggctcatgtcattactcagatggccaataatcctcaatattcagggttgcagcctcttcggcctcctatggttggtcctgtggatgctcctcgaagtatgccgcccatgggttttcaattccggccagtagttccagcacctcattcgcaggagttcattcctgtggcttctcaaaattttcagcatgtcggaagaggtgttccaccaatgaatgttagactgcctcctccaattcaccaacctcagtttccgcaaccagtgcagcagttacctccaagatctggtccaccaggccatggtatgctgccacaggcaattcccttaccagttgctcagcccatcaggaactttgcacctgaattgcctgtacctcagcctaatgtgctacctccaaataatgtcatgtctaacttaagtgccccacggccacctctttcttcgtcatatacttttgcaacttcttcttatggtcaaattccaagaagttttaatgactcgaaccagtatcagtctatatctcaattgcatgcaccaaatgtttcatccgagggacaagttaggttatcatctgatagccagtctgctgttgcttctgtaccttttcagcccactggtgaacgaccttctgtcaccacttcagttgctccagaagccagcatccaacctatttctcttggagggaatccagcagagtggattgaccataaatctgctgatggaagaaggttttattacaacaggaggacacgattatctacttgggagaagccttttgaattgatgacaccactggagagggcagatgcatcaactaactggaaggaatttaccagtcctgatggaaaaaagtatttccacaacaaggtcactaaagaatcaagatggactatacctgaggaactgaagttggcccggcaacaagtggaaaaggcatcggtcaaggacattcctcaggagatgcctgtaaatcatcacaccacagtatcagtttctccccctgtaagtgaagctcatacatcaaccactactgctcaagtagcatcaagccctgtttcggtggcacctgttgttgccactagtgatgttcaaacttccacagtttcaaggtcatctgcctcacctgttgtggcttctcctgtaaaagaaaatgctgatggaatacctgctgttacaccatcttctgatgcttttgaaaatgctgaagctgctgtcacagtcaacaatactgttgcagaactaatggaagatccaaagaatttaccaactcaggaatttgttaattcttccgaggaagttcatgtacaggagaataaggaacctacaaatgatgtgacaggagagaaaattaatgacattgcatcagaagaaaaaccaattgatccagaacccataagttattcaaataagctggaagctaaagatgcatttaaagcactcttggagtctaccaacattggatctgattggacttgggatcgggccatgagagtgataattaatgacaaaagatatggtgctttgaaaacacttggagagcggaagcaagcttttaatgagtttgtggcccaaaggaaaaaacaagaggttgaggagaggcggatcaagcagaaaaaagcacgtgaagattttacaaagatgttggaagaatgctcagagttaacatcatccacaagatggggcaaattagagagcatatttgaaaatgatgaacgtttcaaagcagttgaaagagagagagaccgcagggatttgtttgatagctatttggaggaacttcagaagaaagaaagagcaaaggcacaggaggaacgtaagctccatatagtggagtacagacaattcttggaatcttgcgacttcatcaaggcaagcagccagtggcgaaaagttcaagatcgcttagaggctgacgaacggtgctcacgtcttgaaaaaattgatcgtttggagattttccaggaatatctacgcgatctagagaaggaagaggaagagcagaggaggatacagaaggaagaattgaggaaggcagaacgtaaaaaccgtgatgagttccgcaaattgatggatgatcatattgctgcaggcactctttcagctacaactcactggcgagattacatcctgaaggttaaagatctacctgcatatgtagcagtggtatcaaacacctctggttcaactccaaaagatttatttgaagatgttattgaagagctagagaagcaatatcaaagtgacaaaattcgaataaaagacgtggtgaagtcgggaaagattgtgctttcatcaacctgggaccttgaagccttcaaaactgctatatcgaatgatattggctctccacccatatcagatgcaaacttaatgctagtatttgaggagctaatggaacgcgtgagggaaaaggaggagaaagaagctaaaaggcgtaaacgtcttgcagatgatttctttcatctcttatcttctatgaaggagataactccatcttctaaatgggaggactgtaaatcacttcttgaagttagttcagagtacagtgctattggtgaagagagctcatgcaaggagatattcgataaacacgtaatgcaattgaaagaacaagcaaaagagaaagagagaaaacgaaaggaagagaaggagaggaaggaaaaggacagggaagaaagagagaggagaaggtcgaagcagagaagggaaagaggggtaggatatgaaagagataaagaggatcaccttatgaaagacggagaagacactgaaaatgtggagaggaaggaaaaggacagggaagaaagagagaggagaaggtcgaagcagagaagggaaagaggggtaggatatgaaagagataaagaggatcaccttatgaaagacggagaagacactgaaattattgacataatggaggttaatgattccaaagagaaaaggagatcaggaaaagacgatgataagaaacataggaagaggcatcaaagtgatgaagaccatcaaacaaatggaagtgagaatgatcggtctaaaaggtctcatggatctagcagcgaccacaagagatcaagacgggcatctggtcctgaatcagatactgaaagcaggcacagaagacataagagagatcaccgcaatggttctcggagaagtggtgatcatgaggagctagaagatggggaatttggcgatgttggggaaagtcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0008150 GO:0008152 GO:0008360 GO:0008380 GO:0009987 GO:0010467 GO:0010564 GO:0016043 GO:0016070 GO:0016071 GO:0016363 GO:0016477 GO:0016604 GO:0016607 GO:0022603 GO:0022604 GO:0030532 GO:0031974 GO:0031981 GO:0032465 GO:0032991 GO:0034399 GO:0034641 GO:0040011 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051302 GO:0051674 GO:0051726 GO:0065007 GO:0065008 GO:0070013 GO:0070064 GO:0071004 GO:0071010 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

FF WW

Protein Analysis

1167

Amino Acids

133.89

Weight (kDa)

6.05

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	327 - 355	2.1e-08	WW domain
WW	PF00397	370 - 396	6.6e-08	WW domain
FF	PF01846	569 - 618	2.1e-16	FF domain
FF	PF01846	636 - 686	6.8e-14	FF domain
FF	PF01846	778 - 833	1.1e-07	FF domain
FF_PRPF40A	PF25432	841 - 900	8.7e-20	PRPF40A-like, FF domain
FF	PF01846	914 - 961	1.8e-08	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03330 FvH4_2g03361 FvH4_2g03361
malus_domestica	MD05G1105600.v1.1
prunus_persica	Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1 Prupe.8G150300_v2.0.a1
pyrus_communis	pycom05g10260
rosa_chinensis	RchiOBHm_Chr6g0248471
rosa_laevigata	RLG00000015152
rosa_multiflora	Rmu_sc0002553.1_g000012
rosa_roxburghii	Rroxscaffold_7G00213270
rosa_rugosa	Rorug05G0531500
rosa_samantha	Rh6AG047400 Rh6BG043700 Rh6CG040400 Rh6DG036900
rosa_wichuraiana	Rw6G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1465, 2446
AccB1I	GGYRCC	1 cut(s)	1354
AccB7I	CCANNNNNTGG	4 cut(s)	575, 590, 1968, 2119
AccBSI	CCGCTC	2 cut(s)	176, 1831
AccI	GTMKAC	1 cut(s)	1739
AccII	CGCG	3 cut(s)	172, 2265, 2691
AciI	CCGC	9 cut(s)	9, 176, 395, 545, 1831, 1891, 2035, 2350, 3427
AclI	AACGTT	1 cut(s)	2005
AclWI	GGATC	8 cut(s)	1535, 1667, 1759, 1776, 1901, 3039, 3168, 3346
AcoI	YGGCCR	3 cut(s)	315, 416, 719
AcsI	RAATTY	7 cut(s)	469, 768, 1118, 1549, 1565, 2538, 3476
AcuI	CTGAAG	6 cut(s)	198, 915, 1217, 1515, 2054, 2441
AcvI	CACGTG	1 cut(s)	1913
AfaI	GTAC	6 cut(s)	48, 663, 891, 1596, 2126, 2834
AfiI	CCNNNNNNNGG	8 cut(s)	365, 401, 575, 590, 1156, 1348, 1968, 2119
AflII	CTTAAG	1 cut(s)	706
AflIII	ACRYGT	2 cut(s)	2689, 2881
AhdI	GACNNNNNGTC	1 cut(s)	920
AhlI	ACTAGT	1 cut(s)	1370
AjiI	CACGTC	2 cut(s)	2219, 2554
AjnI	CCWGG	3 cut(s)	583, 2250, 2588
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AloI	GAACNNNNNNTCC	4 cut(s)	477, 509, 2094, 2126
Alw21I	GWGCWC	3 cut(s)	267, 2216, 2858
Alw26I	GTCTC	2 cut(s)	2025, 3336
AlwI	GGATC	8 cut(s)	1535, 1667, 1759, 1776, 1901, 3039, 3168, 3346
AlwNI	CAGNNNCTG	1 cut(s)	3392
AoxI	GGCC	8 cut(s)	315, 353, 416, 586, 719, 1203, 1773, 1857
ApeKI	GCWGC	8 cut(s)	119, 343, 556, 598, 1499, 2166, 2375, 3345
ApoI	RAATTY	7 cut(s)	469, 768, 1118, 1549, 1565, 2538, 3476
AseI	ATTAAT	2 cut(s)	1641, 1791
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	7 cut(s)	368, 578, 1204, 1773, 1858, 2593, 3377
AsuC2I	CCSGG	2 cut(s)	109, 1207
AsuII	TTCGAA	1 cut(s)	2542
AvaII	GGWCC	4 cut(s)	368, 578, 2593, 3377
AxyI	CCTNAGG	2 cut(s)	1188, 1245
BaeGI	GKGCMC	1 cut(s)	715
BaeI	ACNNNNGTAYC	2 cut(s)	1260, 1293
BalI	TGGCCA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	1354
BanII	GRGCYC	3 cut(s)	45, 267, 2858
BarI	GAAGNNNNNNTAC	2 cut(s)	1578, 1610
BbrPI	CACGTG	1 cut(s)	1913
BbsI	GAAGAC	4 cut(s)	3060, 3189, 3294, 3415
Bbv12I	GWGCWC	3 cut(s)	267, 2216, 2858
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	8 cut(s)	106, 355, 568, 585, 1486, 2178, 2362, 3357
BceAI	ACGGC	2 cut(s)	74, 734
BcgI	CGANNNNNNTGC	4 cut(s)	332, 366, 420, 454
BciT130I	CCWGG	3 cut(s)	585, 2252, 2590
BciVI	GTATCC	1 cut(s)	2292
BclI	TGATCA	2 cut(s)	2365, 3451
BcnI	CCSGG	2 cut(s)	109, 1207
BcoDI	GTCTC	2 cut(s)	2025, 3336
BcuI	ACTAGT	1 cut(s)	1370
BfaI	CTAG	6 cut(s)	1371, 2270, 2513, 2666, 3342, 3464
BfmI	CTRYAG	1 cut(s)	2376
BfrI	CTTAAG	1 cut(s)	706
BfuAI	ACCTGC	2 cut(s)	1465, 2446
BfuI	GTATCC	1 cut(s)	2292
BglI	GCCNNNNNGGC	1 cut(s)	352
BglII	AGATCT	2 cut(s)	572, 2431
BisI	GCNGC	9 cut(s)	120, 344, 395, 557, 599, 1500, 2167, 2376, 3346
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	9 cut(s)	121, 345, 396, 558, 600, 1501, 2168, 2377, 3347
Bme1390I	CCNGG	5 cut(s)	109, 585, 1207, 2252, 2590
Bme18I	GGWCC	4 cut(s)	368, 578, 2593, 3377
BmeRI	GACNNNNNGTC	1 cut(s)	920
BmgBI	CACGTC	2 cut(s)	2219, 2554
BmgT120I	GGNCC	7 cut(s)	368, 578, 1204, 1773, 1858, 2593, 3377
BmiI	GGNNCC	3 cut(s)	1356, 1611, 2594
BmrFI	CCNGG	5 cut(s)	109, 585, 1207, 2252, 2590
BpiI	GAAGAC	4 cut(s)	3060, 3189, 3294, 3415
BpmI	CTGGAG	3 cut(s)	281, 924, 1106
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	2542
BpuEI	CTTGAG	2 cut(s)	56, 1311
BpuMI	CCSGG	2 cut(s)	109, 1207
BsaAI	YACGTR	2 cut(s)	1913, 2884
BsaI	GGTCTC	2 cut(s)	2025, 3336
BsaJI	CCNNGG	7 cut(s)	108, 399, 589, 716, 840, 1581, 2589
BsaXI	ACNNNNNCTCC	4 cut(s)	2094, 2124, 3433, 3463
Bsc4I	CCNNNNNNNGG	8 cut(s)	365, 401, 575, 590, 1156, 1348, 1968, 2119
Bse21I	CCTNAGG	2 cut(s)	1188, 1245
Bse3DI	GCAATG	2 cut(s)	1647, 3436
BseBI	CCWGG	3 cut(s)	585, 2252, 2590
BseDI	CCNNGG	7 cut(s)	108, 399, 589, 716, 840, 1581, 2589
BseGI	GGATG	6 cut(s)	382, 836, 951, 1958, 2368, 2415
BseLI	CCNNNNNNNGG	8 cut(s)	365, 401, 575, 590, 1156, 1348, 1968, 2119
BseMI	GCAATG	2 cut(s)	1647, 3436
BseMII	CTCAG	9 cut(s)	288, 323, 551, 641, 680, 1179, 1259, 1574, 1959
BseRI	GAGGAG	9 cut(s)	372, 510, 1898, 2308, 2690, 2720, 2989, 3118, 3473
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	8 cut(s)	106, 355, 568, 585, 1486, 2178, 2362, 3357
BsgI	GTGCAG	1 cut(s)	575
Bsh1236I	CGCG	3 cut(s)	172, 2265, 2691
BshFI	GGCC	8 cut(s)	317, 355, 418, 588, 721, 1205, 1775, 1859
BshNI	GGYRCC	1 cut(s)	1354
BsiHKAI	GWGCWC	3 cut(s)	267, 2216, 2858
BsiSI	CCGG	3 cut(s)	108, 415, 1207
BslFI	GGGAC	2 cut(s)	858, 2606
BslI	CCNNNNNNNGG	8 cut(s)	365, 401, 575, 590, 1156, 1348, 1968, 2119
BsmAI	GTCTC	2 cut(s)	2025, 3336
BsmFI	GGGAC	2 cut(s)	858, 2606
BsmI	GAATGC	2 cut(s)	198, 1946
BsnI	GGCC	8 cut(s)	317, 355, 418, 588, 721, 1205, 1775, 1859
Bso31I	GGTCTC	2 cut(s)	2025, 3336
Bsp119I	TTCGAA	1 cut(s)	2542
Bsp1286I	GDGCHC	5 cut(s)	45, 267, 715, 2216, 2858
Bsp1407I	TGTACA	1 cut(s)	1594
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp19I	CCATGG	2 cut(s)	399, 589
Bsp68I	TCGCGA	1 cut(s)	172
BspACI	CCGC	9 cut(s)	9, 176, 395, 545, 1831, 1891, 2035, 2350, 3427
BspANI	GGCC	8 cut(s)	317, 355, 418, 588, 721, 1205, 1775, 1859
BspCNI	CTCAG	9 cut(s)	287, 322, 550, 640, 679, 1180, 1258, 1573, 1958
BspFNI	CGCG	3 cut(s)	172, 2265, 2691
BspHI	TCATGA	1 cut(s)	3454
BspLI	GGNNCC	3 cut(s)	1356, 1611, 2594
BspMAI	CTGCAG	1 cut(s)	2380
BspMI	ACCTGC	2 cut(s)	1465, 2446
BspPI	GGATC	8 cut(s)	1535, 1667, 1759, 1776, 1901, 3039, 3168, 3346
BspQI	GCTCTTC	2 cut(s)	2280, 2502
BspT104I	TTCGAA	1 cut(s)	2542
BspT107I	GGYRCC	1 cut(s)	1354
BspTI	CTTAAG	1 cut(s)	706
BspTNI	GGTCTC	2 cut(s)	2025, 3336
BsrBI	CCGCTC	2 cut(s)	176, 1831
BsrDI	GCAATG	2 cut(s)	1647, 3436
BsrGI	TGTACA	1 cut(s)	1594
BssECI	CCNNGG	7 cut(s)	108, 399, 589, 716, 840, 1581, 2589
BssT1I	CCWWGG	2 cut(s)	399, 589
Bst2UI	CCWGG	3 cut(s)	585, 2252, 2590
Bst4CI	ACNGT	8 cut(s)	1276, 1393, 1510, 1522, 2211, 2339, 2804, 2837
Bst6I	CTCTTC	8 cut(s)	354, 481, 2274, 2280, 2502, 2844, 2928, 3263
BstAFI	CTTAAG	1 cut(s)	706
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstAUI	TGTACA	1 cut(s)	1594
BstBAI	YACGTR	2 cut(s)	1913, 2884
BstBI	TTCGAA	1 cut(s)	2542
BstC8I	GCNNGC	7 cut(s)	174, 822, 949, 1839, 2164, 2380, 3401
BstDSI	CCRYGG	3 cut(s)	399, 589, 716
BstF5I	GGATG	6 cut(s)	382, 836, 951, 1958, 2368, 2415
BstFNI	CGCG	3 cut(s)	172, 2265, 2691
BstMAI	GTCTC	2 cut(s)	2025, 3336
BstNI	CCWGG	3 cut(s)	585, 2252, 2590
BstNSI	RCATGY	2 cut(s)	482, 824
BstSCI	CCNGG	5 cut(s)	107, 583, 1205, 2250, 2588
BstSFI	CTRYAG	1 cut(s)	2376
BstSLI	GKGCMC	1 cut(s)	715
BstUI	CGCG	3 cut(s)	172, 2265, 2691
BstV1I	GCAGC	8 cut(s)	106, 355, 568, 585, 1486, 2178, 2362, 3357
BstV2I	GAAGAC	4 cut(s)	3060, 3189, 3294, 3415
BstX2I	RGATCY	5 cut(s)	572, 1540, 1751, 2431, 3338
BstXI	CCANNNNNNTGG	1 cut(s)	987
BstYI	RGATCY	5 cut(s)	572, 1540, 1751, 2431, 3338
Bsu36I	CCTNAGG	2 cut(s)	1188, 1245
BsuI	GTATCC	1 cut(s)	2292
BsuRI	GGCC	8 cut(s)	317, 355, 418, 588, 721, 1205, 1775, 1859
BtgI	CCRYGG	3 cut(s)	399, 589, 716
BtgZI	GCGATG	1 cut(s)	3498
BtrI	CACGTC	2 cut(s)	2219, 2554
BtsCI	GGATG	6 cut(s)	382, 836, 951, 1958, 2368, 2415
BtsI	GCAGTG	1 cut(s)	2457
BtsIMutI	CAGTG	9 cut(s)	558, 903, 1082, 2177, 2401, 2457, 2842, 3057, 3186
BtuMI	TCGCGA	1 cut(s)	172
BveI	ACCTGC	2 cut(s)	1465, 2446
Cac8I	GCNNGC	7 cut(s)	174, 822, 949, 1839, 2164, 2380, 3401
CaiI	CAGNNNCTG	1 cut(s)	3392
CciI	TCATGA	1 cut(s)	3454
Cfr13I	GGNCC	7 cut(s)	368, 578, 1204, 1773, 1858, 2593, 3377
Csp6I	GTAC	6 cut(s)	47, 662, 890, 1595, 2125, 2833
CspCI	CAANNNNNGTGG	2 cut(s)	916, 951
CviQI	GTAC	6 cut(s)	47, 662, 890, 1595, 2125, 2833
DraI	TTTAAA	1 cut(s)	1723
DriI	GACNNNNNGTC	1 cut(s)	920
EaeI	YGGCCR	3 cut(s)	315, 416, 719
Eam1104I	CTCTTC	8 cut(s)	354, 481, 2274, 2280, 2502, 2844, 2928, 3263
Eam1105I	GACNNNNNGTC	1 cut(s)	920
EarI	CTCTTC	8 cut(s)	354, 481, 2274, 2280, 2502, 2844, 2928, 3263
EciI	GGCGGA	1 cut(s)	1906
Ecl136II	GAGCTC	2 cut(s)	265, 2856
Eco130I	CCWWGG	2 cut(s)	399, 589
Eco24I	GRGCYC	3 cut(s)	45, 267, 2858
Eco31I	GGTCTC	2 cut(s)	2025, 3336
Eco47I	GGWCC	4 cut(s)	368, 578, 2593, 3377
Eco53kI	GAGCTC	2 cut(s)	265, 2856
Eco57I	CTGAAG	6 cut(s)	198, 915, 1217, 1515, 2054, 2441
Eco72I	CACGTG	1 cut(s)	1913
Eco81I	CCTNAGG	2 cut(s)	1188, 1245
EcoICRI	GAGCTC	2 cut(s)	265, 2856
EcoO109I	RGGNCCY	1 cut(s)	2593
EcoRII	CCWGG	3 cut(s)	583, 2250, 2588
EcoT14I	CCWWGG	2 cut(s)	399, 589
EcoT22I	ATGCAT	2 cut(s)	1102, 1720
EcoT38I	GRGCYC	3 cut(s)	45, 267, 2858
ErhI	CCWWGG	2 cut(s)	399, 589
FaqI	GGGAC	2 cut(s)	858, 2606
FauI	CCCGC	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	2443
FbaI	TGATCA	2 cut(s)	2365, 3451
FblI	GTMKAC	1 cut(s)	1739
Fnu4HI	GCNGC	9 cut(s)	120, 344, 395, 557, 599, 1500, 2167, 2376, 3346
FokI	GGATG	6 cut(s)	389, 823, 938, 1945, 2375, 2402
FriOI	GRGCYC	3 cut(s)	45, 267, 2858
Fsp4HI	GCNGC	9 cut(s)	120, 344, 395, 557, 599, 1500, 2167, 2376, 3346
FspBI	CTAG	6 cut(s)	1371, 2270, 2513, 2666, 3342, 3464
GluI	GCNGC	9 cut(s)	120, 344, 395, 557, 599, 1500, 2167, 2376, 3346
GsuI	CTGGAG	3 cut(s)	281, 924, 1106
HaeIII	GGCC	8 cut(s)	317, 355, 418, 588, 721, 1205, 1775, 1859
HapII	CCGG	3 cut(s)	108, 415, 1207
HincII	GTYRAC	2 cut(s)	1513, 1953
HindII	GTYRAC	2 cut(s)	1513, 1953
HindIII	AAGCTT	1 cut(s)	1839
HinfI	GANTC	8 cut(s)	167, 788, 976, 1169, 1736, 2141, 3218, 3383
HpaI	GTTAAC	1 cut(s)	1953
HpaII	CCGG	3 cut(s)	108, 415, 1207
Hpy166II	GTNNAC	7 cut(s)	188, 581, 911, 1513, 1740, 1953, 2729
Hpy8I	GTNNAC	7 cut(s)	188, 581, 911, 1513, 1740, 1953, 2729
HpyCH4III	ACNGT	8 cut(s)	1276, 1393, 1510, 1522, 2211, 2339, 2804, 2837
HpyCH4IV	ACGT	8 cut(s)	1912, 2005, 2104, 2218, 2329, 2553, 2731, 2883
HpySE526I	ACGT	8 cut(s)	1912, 2005, 2104, 2218, 2329, 2553, 2731, 2883
Ksp22I	TGATCA	2 cut(s)	2365, 3451
KspAI	GTTAAC	1 cut(s)	1953
LguI	GCTCTTC	2 cut(s)	2280, 2502
LmnI	GCTCC	8 cut(s)	262, 270, 283, 385, 943, 2115, 2677, 3460
Lsp1109I	GCAGC	8 cut(s)	106, 355, 568, 585, 1486, 2178, 2362, 3357
MaeI	CTAG	6 cut(s)	1371, 2270, 2513, 2666, 3342, 3464
MaeII	ACGT	8 cut(s)	1912, 2005, 2104, 2218, 2329, 2553, 2731, 2883
MaeIII	GTNAC	7 cut(s)	561, 922, 1159, 1462, 1504, 1624, 2531
MbiI	CCGCTC	2 cut(s)	176, 1831
MfeI	CAATTG	3 cut(s)	815, 1668, 2891
MflI	RGATCY	5 cut(s)	572, 1540, 1751, 2431, 3338
MhlI	GDGCHC	5 cut(s)	45, 267, 715, 2216, 2858
MlsI	TGGCCA	1 cut(s)	317
MluI	ACGCGT	1 cut(s)	2689
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	3 cut(s)	161, 782, 1745
MmeI	TCCRAC	3 cut(s)	463, 979, 1914
Mox20I	TGGCCA	1 cut(s)	317
Mph1103I	ATGCAT	2 cut(s)	1102, 1720
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	317
MslI	CAYNNNNRTG	4 cut(s)	455, 1781, 3279, 3429
Msp20I	TGGCCA	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	706
MspI	CCGG	3 cut(s)	108, 415, 1207
MspR9I	CCNGG	5 cut(s)	109, 585, 1207, 2252, 2590
MunI	CAATTG	3 cut(s)	815, 1668, 2891
Mva1269I	GAATGC	2 cut(s)	198, 1946
MvaI	CCWGG	3 cut(s)	585, 2252, 2590
MvnI	CGCG	3 cut(s)	172, 2265, 2691
NciI	CCSGG	2 cut(s)	109, 1207
NcoI	CCATGG	2 cut(s)	399, 589
NdeI	CATATG	1 cut(s)	2443
NlaIV	GGNNCC	3 cut(s)	1356, 1611, 2594
NmuCI	GTSAC	5 cut(s)	922, 1159, 1504, 1624, 2531
NruI	TCGCGA	1 cut(s)	172
NsiI	ATGCAT	2 cut(s)	1102, 1720
NspI	RCATGY	2 cut(s)	482, 824
NspV	TTCGAA	1 cut(s)	2542
PaeI	GCATGC	1 cut(s)	824
PagI	TCATGA	1 cut(s)	3454
PciSI	GCTCTTC	2 cut(s)	2280, 2502
PcsI	WCGNNNNNNNCGW	3 cut(s)	2215, 2335, 2880
PctI	GAATGC	2 cut(s)	198, 1946
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	5 cut(s)	976, 1169, 2141, 3218, 3383
PflMI	CCANNNNNTGG	4 cut(s)	575, 590, 1968, 2119
PfoI	TCCNGGA	1 cut(s)	2250
PkrI	GCNGC	9 cut(s)	121, 345, 396, 558, 600, 1501, 2168, 2377, 3347
PleI	GAGTC	3 cut(s)	161, 782, 1744
PmaCI	CACGTG	1 cut(s)	1913
PmlI	CACGTG	1 cut(s)	1913
PpsI	GAGTC	3 cut(s)	161, 782, 1744
Ppu21I	YACGTR	2 cut(s)	1913, 2884
PpuMI	RGGWCCY	1 cut(s)	2593
PshBI	ATTAAT	2 cut(s)	1641, 1791
Psp124BI	GAGCTC	2 cut(s)	267, 2858
Psp1406I	AACGTT	1 cut(s)	2005
Psp5II	RGGWCCY	1 cut(s)	2593
Psp6I	CCWGG	3 cut(s)	583, 2250, 2588
PspCI	CACGTG	1 cut(s)	1913
PspGI	CCWGG	3 cut(s)	583, 2250, 2588
PspN4I	GGNNCC	3 cut(s)	1356, 1611, 2594
PspPI	GGNCC	7 cut(s)	368, 578, 1204, 1773, 1858, 2593, 3377
PspPPI	RGGWCCY	1 cut(s)	2593
PstI	CTGCAG	1 cut(s)	2380
PstNI	CAGNNNCTG	1 cut(s)	3392
PsuI	RGATCY	5 cut(s)	572, 1540, 1751, 2431, 3338
RruI	TCGCGA	1 cut(s)	172
RsaI	GTAC	6 cut(s)	48, 663, 891, 1596, 2126, 2834
RsaNI	GTAC	6 cut(s)	47, 662, 890, 1595, 2125, 2833
RseI	CAYNNNNRTG	4 cut(s)	455, 1781, 3279, 3429
SacI	GAGCTC	2 cut(s)	267, 2858
SapI	GCTCTTC	2 cut(s)	2280, 2502
SatI	GCNGC	9 cut(s)	120, 344, 395, 557, 599, 1500, 2167, 2376, 3346
Sau96I	GGNCC	7 cut(s)	368, 578, 1204, 1773, 1858, 2593, 3377
SchI	GAGTC	3 cut(s)	161, 782, 1745
ScrFI	CCNGG	5 cut(s)	109, 585, 1207, 2252, 2590
SduI	GDGCHC	5 cut(s)	45, 267, 715, 2216, 2858
SfcI	CTRYAG	1 cut(s)	2376
SfuI	TTCGAA	1 cut(s)	2542
SinI	GGWCC	4 cut(s)	368, 578, 2593, 3377
SmiMI	CAYNNNNRTG	4 cut(s)	455, 1781, 3279, 3429
SmlI	CTYRAG	3 cut(s)	35, 706, 1326
SmoI	CTYRAG	3 cut(s)	35, 706, 1326
SpeI	ACTAGT	1 cut(s)	1370
SphI	GCATGC	1 cut(s)	824
SsiI	CCGC	9 cut(s)	9, 176, 395, 545, 1831, 1891, 2035, 2350, 3427
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	6 cut(s)	1371, 2270, 2513, 2666, 3342, 3464
SstI	GAGCTC	2 cut(s)	267, 2858
StyD4I	CCNGG	5 cut(s)	107, 583, 1205, 2250, 2588
StyI	CCWWGG	2 cut(s)	399, 589
TaaI	ACNGT	8 cut(s)	1276, 1393, 1510, 1522, 2211, 2339, 2804, 2837
TaiI	ACGT	8 cut(s)	1915, 2008, 2107, 2221, 2332, 2556, 2734, 2886
TaqI	TCGA	8 cut(s)	235, 385, 791, 2542, 2621, 2874, 2984, 3113
TaqII	GACCGA	2 cut(s)	1219, 3309
TatI	WGTACW	3 cut(s)	1594, 2124, 2832
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	5 cut(s)	976, 1169, 2141, 3218, 3383
TscAI	CASTG	9 cut(s)	558, 910, 1089, 2177, 2408, 2457, 2842, 3064, 3193
TseFI	GTSAC	5 cut(s)	922, 1159, 1504, 1624, 2531
TseI	GCWGC	8 cut(s)	119, 343, 556, 598, 1499, 2166, 2375, 3345
Tsp45I	GTSAC	5 cut(s)	922, 1159, 1504, 1624, 2531
TspGWI	ACGGA	3 cut(s)	270, 3063, 3192
TspRI	CASTG	9 cut(s)	558, 910, 1089, 2177, 2408, 2457, 2842, 3064, 3193
Van91I	CCANNNNNTGG	4 cut(s)	575, 590, 1968, 2119
Vha464I	CTTAAG	1 cut(s)	706
VpaK11BI	GGWCC	4 cut(s)	368, 578, 2593, 3377
VspI	ATTAAT	2 cut(s)	1641, 1791
XapI	RAATTY	7 cut(s)	469, 768, 1118, 1549, 1565, 2538, 3476
XbaI	TCTAGA	1 cut(s)	2269
XceI	RCATGY	2 cut(s)	482, 824
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2790, 3299
XmiI	GTMKAC	1 cut(s)	1739
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	6 cut(s)	1371, 2270, 2513, 2666, 3342, 3464
Zsp2I	ATGCAT	2 cut(s)	1102, 1720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.