Rmu_sc0002560.1_g000016

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002560.1
OG0018634
Physical Location & Seq
Forward (+)
78381 .. 79169
789 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 789 bp
atgacaacaacgcctgtgggaaacaacggagatagcatggtttggcaccccaagggaacagggacatgctacagttactgcataacagagcttcttcaagccaaggccaaagtcatcactggaatagacgttaaactgtctattcctcatgttatcacccgcttaagggggaagcacacctccatggaaaatgtgctcgactttgcaaaatttgaaggagttttaatccatgatgactggcccaggttcaagcatggtggtggaaggagagtttttgtgaagaattggaaaccatttcatgggcgagaacaattggtggcggggatgcaacgcgggcctttgatcggcgtctggaagccgcatatggccttggaataccaccctgctattgcaaagaggattgtgacactggaggatgtcgaattgtatgatattctggagcaacagagagcaacagagaaaggctattggcccggagtttgtaagcacgagttttgtcgcaactttgaagaagagattcctgagttttgctattattgcagcttttatggttcaaaccggggtcactgtgtagtcataactggatataacagagatccaactgtggacatcccctattgggagtttagaaacaactggggaccgaagtgggggaggcacggttatggaagatttgaaatgactgtgggagaggaagaggatcctaagttgcttgaaaagccaattggagttttagatttggagagaagaggatatggggctgaaataaagaagattacctggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko04621 ko04924 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map04621 map04924 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

262

Amino Acids

30.34

Weight (kDa)

8.1

Isoelectric Point (pI)

21.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 185 - 228 1.1e-07 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018634)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0253131
rosa_laevigata RLG00000007618
rosa_multiflora Rmu_sc0002560.1_g000016 Rmu_sc0003898.1_g000004
rosa_roxburghii Rroxscaffold_5G00364440 Rroxscaffold_5G00364450
rosa_samantha Rh5BG186200 Rh6BG051700 Rh6CG049500 Rh6DG045400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AccB7I CCANNNNNTGG 1 cut(s) 299
AccII CGCG 1 cut(s) 333
AciI CCGC 4 cut(s) 160, 320, 333, 359
AclWI GGATC 3 cut(s) 590, 695, 708
AcsI RAATTY 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 348
AfiI CCNNNNNNNGG 6 cut(s) 165, 166, 299, 344, 619, 650
AflII CTTAAG 1 cut(s) 163
AgsI TTSAA 7 cut(s) 98, 215, 250, 509, 555, 677, 716
AjnI CCWGG 2 cut(s) 242, 779
AjuI GAANNNNNNNTTGG 2 cut(s) 708, 740
AluBI AGCT 2 cut(s) 91, 543
AluI AGCT 2 cut(s) 91, 543
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 3 cut(s) 590, 695, 708
AlwNI CAGNNNCTG 1 cut(s) 78
AoxI GGCC 5 cut(s) 105, 239, 335, 366, 470
ApeKI GCWGC 1 cut(s) 540
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 516
AspS9I GGNCC 4 cut(s) 240, 335, 471, 641
AsuC2I CCSGG 2 cut(s) 474, 560
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 641
BamHI GGATCC 1 cut(s) 700
BanI GGYRCC 1 cut(s) 45
BauI CACGAG 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 552
BciT130I CCWGG 2 cut(s) 244, 781
BcnI CCSGG 2 cut(s) 474, 560
BfmI CTRYAG 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 163
BisI GCNGC 2 cut(s) 359, 541
BlsI GCNGC 2 cut(s) 360, 542
Bme1390I CCNGG 4 cut(s) 244, 474, 560, 781
Bme18I GGWCC 1 cut(s) 641
BmgT120I GGNCC 4 cut(s) 240, 335, 471, 641
BmiI GGNNCC 3 cut(s) 47, 642, 702
BmrFI CCNGG 4 cut(s) 244, 474, 560, 781
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 646
BpmI CTGGAG 2 cut(s) 431, 458
BpuMI CCSGG 2 cut(s) 474, 560
BsaHI GRCGYC 1 cut(s) 348
BsaJI CCNNGG 6 cut(s) 51, 102, 183, 242, 369, 559
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 6 cut(s) 165, 166, 299, 344, 619, 650
Bse1I ACTGG 5 cut(s) 124, 242, 414, 586, 641
BseBI CCWGG 2 cut(s) 244, 781
BseDI CCNNGG 6 cut(s) 51, 102, 183, 242, 369, 559
BseGI GGATG 4 cut(s) 330, 421, 609, 789
BseLI CCNNNNNNNGG 6 cut(s) 165, 166, 299, 344, 619, 650
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 5 cut(s) 124, 242, 414, 586, 641
BseXI GCAGC 1 cut(s) 552
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 5 cut(s) 107, 241, 337, 368, 472
BshNI GGYRCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 474, 559
BslFI GGGAC 2 cut(s) 76, 654
BslI CCNNNNNNNGG 6 cut(s) 165, 166, 299, 344, 619, 650
BsmFI GGGAC 2 cut(s) 76, 654
BsnI GGCC 5 cut(s) 107, 241, 337, 368, 472
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 3 cut(s) 342, 595, 700
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 4 cut(s) 160, 320, 333, 359
BspANI GGCC 5 cut(s) 107, 241, 337, 368, 472
BspCNI CTCAG 1 cut(s) 514
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 3 cut(s) 47, 642, 702
BspPI GGATC 3 cut(s) 590, 695, 708
BspT107I GGYRCC 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 163
BsrI ACTGG 5 cut(s) 124, 242, 414, 586, 641
BssECI CCNNGG 6 cut(s) 51, 102, 183, 242, 369, 559
BssMI GATC 3 cut(s) 342, 595, 700
BssNI GRCGYC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 488
BssT1I CCWWGG 4 cut(s) 51, 102, 183, 369
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 2 cut(s) 244, 781
Bst4CI ACNGT 6 cut(s) 74, 138, 569, 604, 662, 685
Bst6I CTCTTC 3 cut(s) 507, 690, 742
BstACI GRCGYC 1 cut(s) 348
BstAFI CTTAAG 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 522, 705
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 4 cut(s) 330, 421, 609, 789
BstFNI CGCG 1 cut(s) 333
BstKTI GATC 3 cut(s) 345, 598, 703
BstMBI GATC 3 cut(s) 342, 595, 700
BstMWI GCNNNNNNNGC 3 cut(s) 334, 537, 718
BstNI CCWGG 2 cut(s) 244, 781
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 4 cut(s) 242, 472, 558, 779
BstSFI CTRYAG 1 cut(s) 70
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 552
BstX2I RGATCY 2 cut(s) 595, 700
BstYI RGATCY 2 cut(s) 595, 700
BsuRI GGCC 5 cut(s) 107, 241, 337, 368, 472
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 4 cut(s) 330, 421, 609, 789
BtsIMutI CAGTG 3 cut(s) 117, 407, 565
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 1 cut(s) 78
Cfr13I GGNCC 4 cut(s) 240, 335, 471, 641
CseI GACGC 1 cut(s) 337
CspCI CAANNNNNGTGG 3 cut(s) 32, 238, 273
CviAII CATG 7 cut(s) 37, 66, 149, 184, 230, 254, 299
DdeI CTNAG 2 cut(s) 522, 705
DpnI GATC 3 cut(s) 344, 597, 702
DpnII GATC 3 cut(s) 342, 595, 700
Eam1104I CTCTTC 3 cut(s) 507, 690, 742
EarI CTCTTC 3 cut(s) 507, 690, 742
Eco130I CCWWGG 4 cut(s) 51, 102, 183, 369
Eco47I GGWCC 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 242, 779
EcoT14I CCWWGG 4 cut(s) 51, 102, 183, 369
ErhI CCWWGG 4 cut(s) 51, 102, 183, 369
FaeI CATG 7 cut(s) 40, 69, 152, 187, 233, 257, 302
FaqI GGGAC 2 cut(s) 76, 654
FatI CATG 7 cut(s) 36, 65, 148, 183, 229, 253, 298
FauI CCCGC 3 cut(s) 167, 313, 326
FauNDI CATATG 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 359, 541
FokI GGATG 3 cut(s) 337, 428, 596
Fsp4HI GCNGC 2 cut(s) 359, 541
GluI GCNGC 2 cut(s) 359, 541
GsuI CTGGAG 2 cut(s) 431, 458
HaeIII GGCC 5 cut(s) 107, 241, 337, 368, 472
HapII CCGG 2 cut(s) 474, 559
HgaI GACGC 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 7 cut(s) 40, 69, 152, 187, 233, 257, 302
HinfI GANTC 1 cut(s) 517
HpaII CCGG 2 cut(s) 474, 559
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 607
Hpy188III TCNNGA 3 cut(s) 352, 437, 521
Hpy8I GTNNAC 1 cut(s) 607
HpyAV CCTTC 2 cut(s) 209, 258
HpyCH4III ACNGT 6 cut(s) 74, 138, 569, 604, 662, 685
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 5 cut(s) 81, 206, 328, 392, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 537, 718
HpyF3I CTNAG 2 cut(s) 522, 705
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 7 cut(s) 40, 69, 152, 187, 233, 257, 302
Kzo9I GATC 3 cut(s) 342, 595, 700
LmnI GCTCC 1 cut(s) 439
Lsp1109I GCAGC 1 cut(s) 552
LweI GCATC 1 cut(s) 315
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 3 cut(s) 74, 403, 563
MalI GATC 3 cut(s) 344, 597, 702
MboI GATC 3 cut(s) 342, 595, 700
MboII GAAGA 8 cut(s) 86, 292, 521, 524, 681, 707, 759, 784
MfeI CAATTG 2 cut(s) 311, 723
MflI RGATCY 2 cut(s) 595, 700
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 5 cut(s) 209, 283, 311, 422, 723
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 8 cut(s) 156, 190, 390, 406, 648, 685, 691, 743
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 3 cut(s) 132, 164, 224
MslI CAYNNNNRTG 3 cut(s) 182, 258, 663
MspCI CTTAAG 1 cut(s) 163
MspI CCGG 2 cut(s) 474, 559
MspR9I CCNGG 4 cut(s) 244, 474, 560, 781
MunI CAATTG 2 cut(s) 311, 723
MvaI CCWGG 2 cut(s) 244, 781
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 334, 537, 718
NciI CCSGG 2 cut(s) 474, 560
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 363
NdeII GATC 3 cut(s) 342, 595, 700
NlaIII CATG 7 cut(s) 40, 69, 152, 187, 233, 257, 302
NlaIV GGNNCC 3 cut(s) 47, 642, 702
NmuCI GTSAC 2 cut(s) 403, 563
NspI RCATGY 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 2 cut(s) 360, 542
Psp6I CCWGG 2 cut(s) 242, 779
PspGI CCWGG 2 cut(s) 242, 779
PspN4I GGNNCC 3 cut(s) 47, 642, 702
PspPI GGNCC 4 cut(s) 240, 335, 471, 641
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 2 cut(s) 595, 700
RseI CAYNNNNRTG 3 cut(s) 182, 258, 663
SaqAI TTAA 3 cut(s) 132, 164, 224
SatI GCNGC 2 cut(s) 359, 541
Sau3AI GATC 3 cut(s) 342, 595, 700
Sau96I GGNCC 4 cut(s) 240, 335, 471, 641
ScrFI CCNGG 4 cut(s) 244, 474, 560, 781
SduI GDGCHC 1 cut(s) 198
SetI ASST 6 cut(s) 93, 132, 182, 248, 545, 782
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 641
SmiMI CAYNNNNRTG 3 cut(s) 182, 258, 663
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 5 cut(s) 209, 283, 311, 422, 723
SsiI CCGC 4 cut(s) 160, 320, 333, 359
StyD4I CCNGG 4 cut(s) 242, 472, 558, 779
StyI CCWWGG 4 cut(s) 51, 102, 183, 369
TaaI ACNGT 6 cut(s) 74, 138, 569, 604, 662, 685
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 198, 420
TaqII GACCGA 1 cut(s) 658
TasI AATT 5 cut(s) 209, 283, 311, 422, 723
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 3 cut(s) 132, 164, 224
Tru9I TTAA 3 cut(s) 132, 164, 224
TscAI CASTG 3 cut(s) 124, 414, 572
TseFI GTSAC 2 cut(s) 403, 563
TseI GCWGC 1 cut(s) 540
Tsp45I GTSAC 2 cut(s) 403, 563
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 3 cut(s) 124, 414, 572
Van91I CCANNNNNTGG 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.