Rmu_sc0002570.1_g000003

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002570.1
OG0005987
Physical Location & Seq
Forward (+)
21365 .. 22315
951 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 903 bp
atggcctcctcccccgaccacaaccacaccctgaacggcgattccaacacccacgcctccaaaaagcccaaactctccttcatcaccccctccgaaatcgccgccgaattctcccaccaccaccccaccgtcgcccgaatcaacaacggcagcttcgggtccttccccgactccgtcctccaggcccagcgccgctggcagctcaagtacctctcccagcccaatcacttctacttcaaccacctccaagccggcatcctccactcccgcaccctcatcaaggacctcatcaacgccgaccacgtcgacgaggtctccatcgtcgacaacgccaccaccgccgccgccatcgtcctccagcaggctgcctggggcttctccgagagcaagttcgagcagggcgacgccgcctacatcactcacgccggcgggcacgtcattgaggtaccctttccgtttcctttgaattccaacgatgagattgtaaccgagtttaggaaggctttggagaaggggaaggctaatggtaggagggttaggttagctgtgattgatcatattacttcaatgtcgtgtgtggttatacctgttaaggagttggttaagatttgtagggaggagggagttgatcaggttttcgtcgatgcggcacacagcattgggtgcactgaggttgatatgaaggacattggggctgattattatactagtaatttgcacaagtggttcttttgcccgccgtcgattgcgtttttgtattgtaggaagtcgcccaagggtgtggaattgcaccacccggtggtttcccatgagtatgggaatggattggctattgaaagtgcttggattgggactagggattacagccctcagttgtatgtaagtgtcatttctatattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

300

Amino Acids

33.32

Weight (kDa)

6.3

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 56 - 258 3.5e-15 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 799
AccI GTMKAC 2 cut(s) 306, 324
AcsI RAATTY 2 cut(s) 107, 466
AcyI GRCGYC 1 cut(s) 405
AdeI CACNNNGTG 1 cut(s) 799
AfaI GTAC 2 cut(s) 209, 447
AfiI CCNNNNNNNGG 4 cut(s) 280, 361, 495, 799
AgsI TTSAA 4 cut(s) 238, 466, 567, 836
AhlI ACTAGT 1 cut(s) 707
AjiI CACGTC 2 cut(s) 304, 436
AjnI CCWGG 2 cut(s) 180, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 153, 202, 545
AluI AGCT 3 cut(s) 153, 202, 545
Alw21I GWGCWC 1 cut(s) 668
Alw26I GTCTC 1 cut(s) 319
Alw44I GTGCAC 1 cut(s) 664
AoxI GGCC 2 cut(s) 3, 183
ApaLI GTGCAC 1 cut(s) 664
ApeKI GCWGC 3 cut(s) 150, 199, 365
ApoI RAATTY 2 cut(s) 107, 466
Asp718I GGTACC 1 cut(s) 445
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 3 cut(s) 159, 184, 283
AsuC2I CCSGG 1 cut(s) 797
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 159, 283
BaeGI GKGCMC 2 cut(s) 435, 668
BanI GGYRCC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 668
BbvI GCAGC 3 cut(s) 162, 211, 352
BccI CCATC 2 cut(s) 326, 356
BceAI ACGGC 3 cut(s) 52, 163, 724
BciT130I CCWGG 2 cut(s) 182, 370
BclI TGATCA 2 cut(s) 553, 628
BcnI CCSGG 1 cut(s) 797
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 2 cut(s) 708, 855
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 9 cut(s) 102, 151, 193, 200, 342, 345, 366, 408, 648
BlsI GCNGC 9 cut(s) 103, 152, 194, 201, 343, 346, 367, 409, 649
Bme1390I CCNGG 3 cut(s) 182, 370, 797
Bme18I GGWCC 2 cut(s) 159, 283
BmgBI CACGTC 2 cut(s) 304, 436
BmgT120I GGNCC 3 cut(s) 159, 184, 283
BmiI GGNNCC 2 cut(s) 160, 447
BmrFI CCNGG 3 cut(s) 182, 370, 797
BmsI GCATC 2 cut(s) 264, 634
BpmI CTGGAG 2 cut(s) 164, 341
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 797
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 369, 774
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 361, 495, 799
Bse118I RCCGGY 2 cut(s) 251, 425
BseBI CCWGG 2 cut(s) 182, 370
BseDI CCNNGG 2 cut(s) 369, 774
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 4 cut(s) 280, 361, 495, 799
BseMII CTCAG 2 cut(s) 660, 884
BseRI GAGGAG 1 cut(s) 632
BseSI GKGCMC 2 cut(s) 435, 668
BseXI GCAGC 3 cut(s) 162, 211, 352
BseYI CCCAGC 2 cut(s) 186, 216
BshFI GGCC 2 cut(s) 5, 185
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 668
BsiSI CCGG 3 cut(s) 252, 426, 797
BslFI GGGAC 1 cut(s) 865
BslI CCNNNNNNNGG 4 cut(s) 280, 361, 495, 799
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 865
BsnI GGCC 2 cut(s) 5, 185
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 435, 668
Bsp143I GATC 2 cut(s) 553, 628
BspANI GGCC 2 cut(s) 5, 185
BspCNI CTCAG 2 cut(s) 661, 883
BspLI GGNNCC 2 cut(s) 160, 447
BspT107I GGYRCC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 2 cut(s) 251, 425
BssAI RCCGGY 2 cut(s) 251, 425
BssECI CCNNGG 2 cut(s) 369, 774
BssMI GATC 2 cut(s) 553, 628
BssNI GRCGYC 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 774
Bst2UI CCWGG 2 cut(s) 182, 370
Bst4CI ACNGT 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 663
BstC8I GCNNGC 6 cut(s) 197, 253, 363, 427, 431, 737
BstDEI CTNAG 2 cut(s) 669, 870
BstENI CCTNNNNNAGG 2 cut(s) 278, 359
BstF5I GGATG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 2 cut(s) 556, 631
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 2 cut(s) 553, 628
BstMWI GCNNNNNNNGC 3 cut(s) 196, 338, 663
BstNI CCWGG 2 cut(s) 182, 370
BstSCI CCNGG 3 cut(s) 180, 368, 795
BstSLI GKGCMC 2 cut(s) 435, 668
BstV1I GCAGC 3 cut(s) 162, 211, 352
BstXI CCANNNNNNTGG 2 cut(s) 781, 815
BsuRI GGCC 2 cut(s) 5, 185
BtrI CACGTC 2 cut(s) 304, 436
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 6 cut(s) 197, 253, 363, 427, 431, 737
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 2 cut(s) 251, 425
Cfr13I GGNCC 3 cut(s) 159, 184, 283
CseI GACGC 1 cut(s) 413
Csp6I GTAC 2 cut(s) 208, 446
CviAII CATG 1 cut(s) 809
CviQI GTAC 2 cut(s) 208, 446
DdeI CTNAG 2 cut(s) 669, 870
DpnI GATC 2 cut(s) 555, 630
DpnII GATC 2 cut(s) 553, 628
DraIII CACNNNGTG 1 cut(s) 799
Eco130I CCWWGG 1 cut(s) 774
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 159, 283
EcoNI CCTNNNNNAGG 2 cut(s) 278, 359
EcoO109I RGGNCCY 2 cut(s) 159, 283
EcoRI GAATTC 2 cut(s) 107, 466
EcoRII CCWGG 2 cut(s) 180, 368
EcoT14I CCWWGG 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 774
FaeI CATG 1 cut(s) 812
FaiI YATR 8 cut(s) 558, 584, 680, 705, 810, 816, 879, 896
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 1 cut(s) 865
FatI CATG 1 cut(s) 808
FauI CCCGC 3 cut(s) 275, 422, 744
FbaI TGATCA 2 cut(s) 553, 628
FblI GTMKAC 2 cut(s) 306, 324
Fnu4HI GCNGC 9 cut(s) 102, 151, 193, 200, 342, 345, 366, 408, 648
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 9 cut(s) 102, 151, 193, 200, 342, 345, 366, 408, 648
FspBI CTAG 2 cut(s) 708, 855
GlaI GCGC 1 cut(s) 191
GluI GCNGC 9 cut(s) 102, 151, 193, 200, 342, 345, 366, 408, 648
GsaI CCCAGC 2 cut(s) 190, 220
GsuI CTGGAG 2 cut(s) 164, 341
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 2 cut(s) 5, 185
HapII CCGG 3 cut(s) 252, 426, 797
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 1 cut(s) 812
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 2 cut(s) 307, 325
HindII GTYRAC 2 cut(s) 307, 325
HinfI GANTC 3 cut(s) 41, 138, 170
HpaII CCGG 3 cut(s) 252, 426, 797
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 307, 325, 666
Hpy188I TCNGA 2 cut(s) 94, 382
Hpy8I GTNNAC 3 cut(s) 307, 325, 666
Hpy99I CGWCG 7 cut(s) 134, 308, 311, 326, 407, 644, 745
HpyAV CCTTC 6 cut(s) 88, 172, 493, 505, 511, 676
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 303, 435
HpyCH4V TGCA 3 cut(s) 666, 718, 790
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 338, 663
HpyF3I CTNAG 2 cut(s) 669, 870
HpySE526I ACGT 2 cut(s) 303, 435
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 1 cut(s) 812
HspAI GCGC 1 cut(s) 190
KpnI GGTACC 1 cut(s) 449
KroI GCCGGC 2 cut(s) 251, 425
KroNI GCCGGC 2 cut(s) 253, 427
Ksp22I TGATCA 2 cut(s) 553, 628
Kzo9I GATC 2 cut(s) 553, 628
Lsp1109I GCAGC 3 cut(s) 162, 211, 352
LweI GCATC 2 cut(s) 264, 634
MaeI CTAG 2 cut(s) 708, 855
MaeII ACGT 2 cut(s) 303, 435
MaeIII GTNAC 1 cut(s) 484
MalI GATC 2 cut(s) 555, 630
MboI GATC 2 cut(s) 553, 628
MhlI GDGCHC 2 cut(s) 435, 668
MluCI AATT 4 cut(s) 107, 466, 712, 785
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 69, 495
MreI CGCCGGCG 1 cut(s) 425
MroNI GCCGGC 2 cut(s) 251, 425
MseI TTAA 2 cut(s) 591, 603
MslI CAYNNNNRTG 1 cut(s) 813
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 3 cut(s) 252, 426, 797
MspR9I CCNGG 3 cut(s) 182, 370, 797
MvaI CCWGG 2 cut(s) 182, 370
MwoI GCNNNNNNNGC 3 cut(s) 196, 338, 663
NaeI GCCGGC 2 cut(s) 253, 427
NciI CCSGG 1 cut(s) 797
NdeII GATC 2 cut(s) 553, 628
NgoMIV GCCGGC 2 cut(s) 251, 425
NlaIII CATG 1 cut(s) 812
NlaIV GGNNCC 2 cut(s) 160, 447
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 399
PdiI GCCGGC 2 cut(s) 253, 427
PfeI GAWTC 2 cut(s) 41, 138
PflFI GACNNNGTC 3 cut(s) 173, 302, 311
PflMI CCANNNNNTGG 1 cut(s) 799
PkrI GCNGC 9 cut(s) 103, 152, 194, 201, 343, 346, 367, 409, 649
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 2 cut(s) 159, 283
Psp5II RGGWCCY 2 cut(s) 159, 283
Psp6I CCWGG 2 cut(s) 180, 368
PspFI CCCAGC 2 cut(s) 186, 216
PspGI CCWGG 2 cut(s) 180, 368
PspN4I GGNNCC 2 cut(s) 160, 447
PspPI GGNCC 3 cut(s) 159, 184, 283
PspPPI RGGWCCY 2 cut(s) 159, 283
PsyI GACNNNGTC 3 cut(s) 173, 302, 311
RsaI GTAC 2 cut(s) 209, 447
RsaNI GTAC 2 cut(s) 208, 446
RseI CAYNNNNRTG 1 cut(s) 813
SalI GTCGAC 2 cut(s) 305, 323
SaqAI TTAA 2 cut(s) 591, 603
SatI GCNGC 9 cut(s) 102, 151, 193, 200, 342, 345, 366, 408, 648
Sau3AI GATC 2 cut(s) 553, 628
Sau96I GGNCC 3 cut(s) 159, 184, 283
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 182, 370, 797
SduI GDGCHC 2 cut(s) 435, 668
SfaNI GCATC 2 cut(s) 264, 634
SgrAI CRCCGGYG 1 cut(s) 425
SgrDI CGTCGACG 1 cut(s) 305
SinI GGWCC 2 cut(s) 159, 283
SmiMI CAYNNNNRTG 1 cut(s) 813
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 4 cut(s) 107, 466, 712, 785
SspMI CTAG 2 cut(s) 708, 855
StyD4I CCNGG 3 cut(s) 180, 368, 795
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 306, 438
TaqI TCGA 5 cut(s) 306, 324, 393, 642, 743
TasI AATT 4 cut(s) 107, 466, 712, 785
TauI GCSGC 6 cut(s) 104, 195, 344, 347, 410, 650
TfiI GAWTC 2 cut(s) 41, 138
Tru1I TTAA 2 cut(s) 591, 603
Tru9I TTAA 2 cut(s) 591, 603
TscAI CASTG 1 cut(s) 673
TseI GCWGC 3 cut(s) 150, 199, 365
TspDTI ATGAA 2 cut(s) 70, 695
TspGWI ACGGA 2 cut(s) 163, 444
TspRI CASTG 1 cut(s) 673
Tth111I GACNNNGTC 3 cut(s) 173, 302, 311
Van91I CCANNNNNTGG 1 cut(s) 799
VneI GTGCAC 1 cut(s) 664
VpaK11BI GGWCC 2 cut(s) 159, 283
XagI CCTNNNNNAGG 2 cut(s) 278, 359
XapI RAATTY 2 cut(s) 107, 466
XmiI GTMKAC 2 cut(s) 306, 324
XspI CTAG 2 cut(s) 708, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.