Rmu_sc0002603.1_g000002

Belongs to the eukaryotic ribosomal protein eL29 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002603.1
OG0011306
Physical Location & Seq
Forward (+)
1842 .. 5145
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
atgttggcaatgacggatcggtgctccgctgcagattcgttgtggtttggcgctggtaagagattacatggtcgatctgggcttcaacttttggatacgaccacaaggtcgcctacctcttggtggcgggctgcaacggaatggttagggcaacgaagagtgggtctggattggtgcgatagaaagctaacgctgatgtctggtgaagcctggtttggtggcgctggggttgaggtttgggaattctctccatggtggaattgtccttggcttggatggcagaatatggtggtcgagtttcacaatctcaatcccaactttacggtggcggtttggttgttactcattgtagctcgcgggtatgagcgtaaaatttggttaggggttgggcatttttggctcatggaagtcactcatgttgaccgtcccctagctagggtttcactcagatataaaggaccaccttctcgtttcgctccgccaaaagagaagaagaaccctagcgcagatcgaagctctcactctcttttcgaaatggccaagtcaaagaatcacacagctcacaaccagtcccgcaaggcccacaggaatggcatcaagaagccccagaggcaccgccacacctccaccaaggggatggatcccaagtttctgaggaaccagaggtacgccaggaagcacaacaacaccaagaccgaagagtcggccgaggaccattgtctgtggctcgttgggtttgctggacggggagggactggtagtggttggttggcagctcaacgcatccaatttcacaggcggcaaggacaattgcagcacaggaatttaggaaggtggtggcagtttcacgaggcgtgtcgactttctgagggcgggttcagcagtaaaaaccctactggtcggggtcacgacgccgtgtttcatgttttaagtggtgggatggggttttggccaagtcagccttgttag

Protein Analysis

322

Amino Acids

36.98

Weight (kDa)

10.51

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L29e PF01779 181 - 220 7.3e-24 Ribosomal L29e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 106, 700
AccB1I GGYRCC 1 cut(s) 612
AccI GTMKAC 1 cut(s) 859
AccII CGCG 1 cut(s) 357
AciI CCGC 9 cut(s) 27, 127, 329, 357, 479, 574, 616, 799, 873
AclWI GGATC 3 cut(s) 24, 635, 648
AcoI YGGCCR 3 cut(s) 537, 705, 950
AcsI RAATTY 3 cut(s) 242, 372, 823
AcyI GRCGYC 1 cut(s) 912
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 5 cut(s) 123, 272, 435, 436, 633
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 2 cut(s) 209, 671
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 6 cut(s) 187, 353, 434, 516, 560, 776
AluI AGCT 6 cut(s) 187, 353, 434, 516, 560, 776
Alw21I GWGCWC 1 cut(s) 26
AlwI GGATC 3 cut(s) 24, 635, 648
AoxI GGCC 4 cut(s) 537, 579, 705, 950
ApeKI GCWGC 4 cut(s) 29, 131, 773, 814
ApoI RAATTY 3 cut(s) 242, 372, 823
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AspLEI GCGC 3 cut(s) 53, 224, 506
AspS9I GGNCC 3 cut(s) 458, 580, 712
AsuHPI GGTGA 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 2 cut(s) 458, 712
BalI TGGCCA 2 cut(s) 539, 952
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 612
BauI CACGAG 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 4 cut(s) 16, 118, 785, 826
BccI CCATC 3 cut(s) 270, 631, 934
BceAI ACGGC 1 cut(s) 899
BciT130I CCWGG 2 cut(s) 211, 673
BciVI GTATCC 1 cut(s) 88
BfaI CTAG 3 cut(s) 431, 435, 501
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 2 cut(s) 54, 225
BfuI GTATCC 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 610
BisI GCNGC 5 cut(s) 30, 132, 774, 800, 815
BlsI GCNGC 5 cut(s) 31, 133, 775, 801, 816
Bme1390I CCNGG 2 cut(s) 211, 673
Bme18I GGWCC 2 cut(s) 458, 712
BmgT120I GGNCC 3 cut(s) 458, 580, 712
BmiI GGNNCC 3 cut(s) 614, 642, 659
BmrFI CCNGG 2 cut(s) 211, 673
BmsI GCATC 2 cut(s) 603, 792
BoxI GACNNNNGTC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 912
BsaJI CCNNGG 4 cut(s) 251, 266, 630, 708
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 272, 435, 436, 633
Bse1I ACTGG 3 cut(s) 568, 760, 901
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 2 cut(s) 211, 673
BseDI CCNNGG 4 cut(s) 251, 266, 630, 708
BseGI GGATG 4 cut(s) 281, 642, 783, 945
BseLI CCNNNNNNNGG 5 cut(s) 123, 272, 435, 436, 633
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 3 cut(s) 460, 644, 858
BseNI ACTGG 3 cut(s) 568, 760, 901
BseX3I CGGCCG 1 cut(s) 705
BseXI GCAGC 4 cut(s) 16, 118, 785, 826
BseYI CCCAGC 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 357
Bsh1285I CGRYCG 1 cut(s) 708
BshFI GGCC 4 cut(s) 539, 581, 707, 952
BshNI GGYRCC 1 cut(s) 612
BsiEI CGRYCG 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 26
BslFI GGGAC 3 cut(s) 411, 556, 766
BslI CCNNNNNNNGG 5 cut(s) 123, 272, 435, 436, 633
BsmFI GGGAC 3 cut(s) 411, 556, 766
BsnI GGCC 4 cut(s) 539, 581, 707, 952
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 16, 74, 508, 640
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 9 cut(s) 27, 127, 329, 357, 479, 574, 616, 799, 873
BspANI GGCC 4 cut(s) 539, 581, 707, 952
BspCNI CTCAG 3 cut(s) 459, 645, 859
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 614, 642, 659
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 3 cut(s) 24, 635, 648
BspT104I TTCGAA 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 3 cut(s) 568, 760, 901
BssECI CCNNGG 4 cut(s) 251, 266, 630, 708
BssMI GATC 4 cut(s) 16, 74, 508, 640
BssNI GRCGYC 1 cut(s) 912
BssSI CACGAG 1 cut(s) 848
BssT1I CCWWGG 3 cut(s) 251, 266, 630
Bst2BI CACGAG 1 cut(s) 848
Bst2UI CCWGG 2 cut(s) 211, 673
Bst4CI ACNGT 2 cut(s) 325, 425
Bst6I CTCTTC 2 cut(s) 151, 693
BstACI GRCGYC 1 cut(s) 912
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 129, 355
BstDEI CTNAG 3 cut(s) 446, 653, 867
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 4 cut(s) 281, 642, 783, 945
BstFNI CGCG 1 cut(s) 357
BstH2I RGCGCY 2 cut(s) 54, 225
BstHHI GCGC 3 cut(s) 53, 224, 506
BstKTI GATC 4 cut(s) 19, 77, 511, 643
BstMBI GATC 4 cut(s) 16, 74, 508, 640
BstMCI CGRYCG 1 cut(s) 708
BstMWI GCNNNNNNNGC 5 cut(s) 277, 397, 610, 879, 958
BstNI CCWGG 2 cut(s) 211, 673
BstPAI GACNNNNGTC 1 cut(s) 717
BstSCI CCNGG 2 cut(s) 209, 671
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 4 cut(s) 16, 118, 785, 826
BstX2I RGATCY 1 cut(s) 640
BstXI CCANNNNNNTGG 2 cut(s) 590, 637
BstYI RGATCY 1 cut(s) 640
BstZI CGGCCG 1 cut(s) 705
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 4 cut(s) 539, 581, 707, 952
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 4 cut(s) 281, 642, 783, 945
Cac8I GCNNGC 2 cut(s) 129, 355
CfoI GCGC 3 cut(s) 53, 224, 506
Cfr13I GGNCC 3 cut(s) 458, 580, 712
CseI GACGC 1 cut(s) 920
Csp6I GTAC 1 cut(s) 667
CviAII CATG 5 cut(s) 68, 252, 403, 416, 923
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 3 cut(s) 446, 653, 867
DpnI GATC 4 cut(s) 18, 76, 510, 642
DpnII GATC 4 cut(s) 16, 74, 508, 640
DrdI GACNNNNNNGTC 2 cut(s) 106, 700
DseDI GACNNNNNNGTC 2 cut(s) 106, 700
EaeI YGGCCR 3 cut(s) 537, 705, 950
EagI CGGCCG 1 cut(s) 705
Eam1104I CTCTTC 2 cut(s) 151, 693
EarI CTCTTC 2 cut(s) 151, 693
EciI GGCGGA 1 cut(s) 468
EclXI CGGCCG 1 cut(s) 705
Eco130I CCWWGG 3 cut(s) 251, 266, 630
Eco47I GGWCC 2 cut(s) 458, 712
Eco52I CGGCCG 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 209, 671
EcoT14I CCWWGG 3 cut(s) 251, 266, 630
ErhI CCWWGG 3 cut(s) 251, 266, 630
FaeI CATG 5 cut(s) 71, 255, 406, 419, 926
FaiI YATR 8 cut(s) 69, 253, 287, 363, 404, 417, 453, 924
FalI AAGNNNNNCTT 1 cut(s) 946
FaqI GGGAC 3 cut(s) 411, 556, 766
FatI CATG 5 cut(s) 67, 251, 402, 415, 922
FauI CCCGC 4 cut(s) 120, 350, 581, 866
FblI GTMKAC 1 cut(s) 859
Fnu4HI GCNGC 5 cut(s) 30, 132, 774, 800, 815
FokI GGATG 4 cut(s) 288, 649, 770, 952
Fsp4HI GCNGC 5 cut(s) 30, 132, 774, 800, 815
FspBI CTAG 3 cut(s) 431, 435, 501
GlaI GCGC 3 cut(s) 52, 223, 505
GluI GCNGC 5 cut(s) 30, 132, 774, 800, 815
GsaI CCCAGC 1 cut(s) 228
HaeII RGCGCY 2 cut(s) 54, 225
HaeIII GGCC 4 cut(s) 539, 581, 707, 952
HgaI GACGC 1 cut(s) 920
HhaI GCGC 3 cut(s) 53, 224, 506
Hin1I GRCGYC 1 cut(s) 912
Hin1II CATG 5 cut(s) 71, 255, 406, 419, 926
Hin6I GCGC 3 cut(s) 51, 222, 504
HinP1I GCGC 3 cut(s) 51, 222, 504
HincII GTYRAC 2 cut(s) 421, 860
HindII GTYRAC 2 cut(s) 421, 860
HinfI GANTC 3 cut(s) 35, 550, 701
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 421, 860
Hpy188I TCNGA 3 cut(s) 449, 654, 868
Hpy188III TCNNGA 4 cut(s) 167, 598, 848, 908
Hpy8I GTNNAC 2 cut(s) 421, 860
Hpy99I CGWCG 1 cut(s) 914
HpyAV CCTTC 2 cut(s) 474, 825
HpyCH4III ACNGT 2 cut(s) 325, 425
HpyCH4V TGCA 3 cut(s) 32, 134, 814
HpyF10VI GCNNNNNNNGC 5 cut(s) 277, 397, 610, 879, 958
HpyF3I CTNAG 3 cut(s) 446, 653, 867
Hsp92I GRCGYC 1 cut(s) 912
Hsp92II CATG 5 cut(s) 71, 255, 406, 419, 926
HspAI GCGC 3 cut(s) 51, 222, 504
Kzo9I GATC 4 cut(s) 16, 74, 508, 640
LmnI GCTCC 2 cut(s) 29, 481
Lsp1109I GCAGC 4 cut(s) 16, 118, 785, 826
LweI GCATC 2 cut(s) 603, 792
MaeI CTAG 3 cut(s) 431, 435, 501
MaeIII GTNAC 3 cut(s) 339, 409, 905
MalI GATC 4 cut(s) 18, 76, 510, 642
MboI GATC 4 cut(s) 16, 74, 508, 640
MboII GAAGA 4 cut(s) 168, 502, 505, 710
MfeI CAATTG 1 cut(s) 809
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 2 cut(s) 539, 952
MluCI AATT 6 cut(s) 242, 259, 372, 788, 809, 823
MluNI TGGCCA 2 cut(s) 539, 952
MlyI GAGTC 1 cut(s) 710
Mox20I TGGCCA 2 cut(s) 539, 952
MscI TGGCCA 2 cut(s) 539, 952
MseI TTAA 1 cut(s) 929
MslI CAYNNNNRTG 1 cut(s) 588
Msp20I TGGCCA 2 cut(s) 539, 952
MspA1I CMGCKG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 211, 673
MunI CAATTG 1 cut(s) 809
MvaI CCWGG 2 cut(s) 211, 673
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 5 cut(s) 277, 397, 610, 879, 958
NcoI CCATGG 1 cut(s) 251
NdeII GATC 4 cut(s) 16, 74, 508, 640
NlaIII CATG 5 cut(s) 71, 255, 406, 419, 926
NlaIV GGNNCC 3 cut(s) 614, 642, 659
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 2 cut(s) 409, 905
NspV TTCGAA 1 cut(s) 531
PfeI GAWTC 2 cut(s) 35, 550
PkrI GCNGC 5 cut(s) 31, 133, 775, 801, 816
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PshAI GACNNNNGTC 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 209, 671
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 2 cut(s) 209, 671
PspN4I GGNNCC 3 cut(s) 614, 642, 659
PspPI GGNCC 3 cut(s) 458, 580, 712
PsrI GAACNNNNNNTAC 2 cut(s) 650, 682
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 1 cut(s) 588
SalI GTCGAC 1 cut(s) 858
SaqAI TTAA 1 cut(s) 929
SatI GCNGC 5 cut(s) 30, 132, 774, 800, 815
Sau3AI GATC 4 cut(s) 16, 74, 508, 640
Sau96I GGNCC 3 cut(s) 458, 580, 712
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 2 cut(s) 211, 673
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 2 cut(s) 603, 792
SfcI CTRYAG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 2 cut(s) 458, 712
SmiMI CAYNNNNRTG 1 cut(s) 588
Sse9I AATT 6 cut(s) 242, 259, 372, 788, 809, 823
SsiI CCGC 9 cut(s) 27, 127, 329, 357, 479, 574, 616, 799, 873
SspMI CTAG 3 cut(s) 431, 435, 501
StyD4I CCNGG 2 cut(s) 209, 671
StyI CCWWGG 3 cut(s) 251, 266, 630
TaaI ACNGT 2 cut(s) 325, 425
TaqI TCGA 5 cut(s) 73, 294, 511, 531, 859
TaqII GACCGA 1 cut(s) 710
TasI AATT 6 cut(s) 242, 259, 372, 788, 809, 823
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 2 cut(s) 35, 550
Tru1I TTAA 1 cut(s) 929
Tru9I TTAA 1 cut(s) 929
TseFI GTSAC 2 cut(s) 409, 905
TseI GCWGC 4 cut(s) 29, 131, 773, 814
Tsp45I GTSAC 2 cut(s) 409, 905
TspDTI ATGAA 1 cut(s) 911
TspGWI ACGGA 2 cut(s) 29, 152
VpaK11BI GGWCC 2 cut(s) 458, 712
XapI RAATTY 3 cut(s) 242, 372, 823
XcmI CCANNNNNNNNNTGG 2 cut(s) 322, 634
XmiI GTMKAC 1 cut(s) 859
XspI CTAG 3 cut(s) 431, 435, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.