Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002616.1

Orthogroup ID

OG0017449

Physical Location & Seq

Genomic Coordinates Reverse (-)

38849 .. 39475

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgttgacatggttgaggttgtgctctcatgttcctgctataatcaagatgttgaaacattttttggggaaggaacctacgcgagctttgaatgcgagtgagaacattgccagcggttgtgccctgcaatgtgcaattttttgtccgatattcaaagtccaaaagtatcaggtctatgagttcttgccattttcagttacaatttcttggatacattattcttgtaatccccaaagtactttccttttcccaaagggaaatcctattccaagtctcaagcctcttgcatataatggagcagatacattctcagttgatgtgcagactctgcagtatgaagtgcaggcagcacccgcaaaaagtacgtattcaattggccctttgaagtctacatcaggtgaacgggtgaagatgaaggtgaaagttcgcacgaatttgaatgatattgtgtctatagagtcggcaactgttttggaaaagaaggaagttcatggggttctagaggtaacagaagttcgtgtgcctgtggccgaattagtttatggaggaatgactgaagcagaagtgcataaggcaaggacgaaggagtttgagatggcttcacaagatcgattaatggagacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

208

Amino Acids

23.23

Weight (kDa)

8.54

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 171	1.5e-12	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017449)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0209691
rosa_laevigata	RLG00000003101 RLG00000003102
rosa_multiflora	Rmu_sc0002616.1_g000008 Rmu_sc0002616.1_g000009 Rmu_sc0002616.1_g000011 Rmu_sc0002616.1_g000012
rosa_roxburghii	Rroxscaffold_3G00249140
rosa_rugosa	Rorug07G0115600
rosa_samantha	Rh7AG249200 Rh7BG243100 Rh7CG265200 Rh7DG255000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AccII	CGCG	1 cut(s)	82
AciI	CCGC	2 cut(s)	114, 354
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	2 cut(s)	238, 364
AgsI	TTSAA	6 cut(s)	55, 91, 154, 372, 385, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	278, 614
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	2 cut(s)	376, 528
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	433
AseI	ATTAAT	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	410, 418, 430
BaeGI	GKGCMC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	1 cut(s)	589
BciVI	GTATCC	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	278, 614
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	329, 453
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
BmcAI	AGTACT	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	610
BsaAI	YACGTR	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	614
Bse3DI	GCAATG	2 cut(s)	105, 134
BseCI	ATCGAT	1 cut(s)	610
BseMI	GCAATG	2 cut(s)	105, 134
BseMII	CTCAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	359
BsgI	GTGCAG	2 cut(s)	341, 362
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	378, 530
BshVI	ATCGAT	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	278, 614
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	378, 530
Bso31I	GGTCTC	1 cut(s)	614
Bsp1286I	GDGCHC	2 cut(s)	26, 124
Bsp143I	GATC	1 cut(s)	607
BspACI	CCGC	2 cut(s)	114, 354
BspANI	GGCC	2 cut(s)	378, 530
BspCNI	CTCAG	1 cut(s)	323
BspDI	ATCGAT	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	105, 134
BssMI	GATC	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	469
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	84, 112, 345
BstDEI	CTNAG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	610
BstMAI	GTCTC	2 cut(s)	278, 614
BstMBI	GATC	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 328, 353
BstSFI	CTRYAG	2 cut(s)	329, 453
BstSLI	GKGCMC	1 cut(s)	124
BstSNI	TACGTA	1 cut(s)	366
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	359
Bsu15I	ATCGAT	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	378, 530
BsuTUI	ATCGAT	1 cut(s)	610
Cac8I	GCNNGC	3 cut(s)	84, 112, 345
CaiI	CAGNNNCTG	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	610
Csp6I	GTAC	2 cut(s)	237, 363
CviAII	CATG	3 cut(s)	9, 29, 491
CviJI	RGCY	5 cut(s)	86, 280, 378, 530, 599
CviKI_1	RGCY	5 cut(s)	86, 280, 378, 530, 599
CviQI	GTAC	2 cut(s)	237, 363
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	1 cut(s)	609
DpnII	GATC	1 cut(s)	607
EaeI	YGGCCR	1 cut(s)	528
Eco105I	TACGTA	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	576
FaeI	CATG	3 cut(s)	12, 32, 494
FatI	CATG	3 cut(s)	8, 28, 490
FauI	CCCGC	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	378, 530
Hin1II	CATG	3 cut(s)	12, 32, 494
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	325, 458
HphI	GGTGA	3 cut(s)	410, 418, 430
Hpy166II	GTNNAC	3 cut(s)	6, 390, 401
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	46, 500
Hpy8I	GTNNAC	3 cut(s)	6, 390, 401
HpyAV	CCTTC	4 cut(s)	64, 409, 475, 577
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	7 cut(s)	127, 134, 287, 322, 331, 343, 568
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 328, 353
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	3 cut(s)	12, 32, 494
Kzo9I	GATC	1 cut(s)	607
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	48, 124, 137, 155, 329, 381, 537
Lsp1109I	GCAGC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	196, 505
MalI	GATC	1 cut(s)	609
MboI	GATC	1 cut(s)	607
MboII	GAAGA	1 cut(s)	421
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	26, 124
MluCI	AATT	5 cut(s)	135, 201, 372, 433, 533
MlyI	GAGTC	2 cut(s)	319, 467
MnlI	CCTC	4 cut(s)	9, 291, 496, 539
MseI	TTAA	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	114
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	97
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	92, 328, 353
NdeII	GATC	1 cut(s)	607
NlaIII	CATG	3 cut(s)	12, 32, 494
NlaIV	GGNNCC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	2 cut(s)	319, 466
PpsI	GAGTC	2 cut(s)	319, 466
Ppu21I	YACGTR	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	614
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	377
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	238, 364
RsaNI	GTAC	2 cut(s)	237, 363
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	607
Sau96I	GGNCC	1 cut(s)	377
ScaI	AGTACT	1 cut(s)	238
SchI	GAGTC	2 cut(s)	319, 467
SduI	GDGCHC	2 cut(s)	26, 124
SetI	ASST	9 cut(s)	20, 79, 88, 174, 368, 400, 420, 507, 626
SfcI	CTRYAG	2 cut(s)	329, 453
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SnaBI	TACGTA	1 cut(s)	366
Sse9I	AATT	5 cut(s)	135, 201, 372, 433, 533
SsiI	CCGC	2 cut(s)	114, 354
SspMI	CTAG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	1 cut(s)	610
TasI	AATT	5 cut(s)	135, 201, 372, 433, 533
TatI	WGTACW	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	351, 428, 479
VspI	ATTAAT	1 cut(s)	614
XapI	RAATTY	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.