Rmu_sc0002776.1_g000031

Protein preY, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002776.1
OG0010213
Physical Location & Seq
Reverse (-)
148429 .. 150322
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
atgcgcgccattcaattgggcttgacttggttttcgccattaacgcacatcagtctctctgctttggtggctcaggcgacgacgaggtgtgctcagagtactcagagagctcaggagtcaggagcaccaaaaatggtgagaggaagcattaaggttctgaaagatgcggcctctgggctcaataagaccctatacgacagacttgtctgcccgctttctaggcaacccctgaggttctgtgaggaaacgaattctttgatcagtgatgctattggtgtttcgtatcctataaaggatgggattccttgcttagtaccagcggatggcaagatgcttgatacggatgcaataaaacgtgaagagggacctgaacaccaagcattttgcaaggaagccttaaagcatgcatctaggggtgatagagccattagcttgtctgattctcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

149

Amino Acids

16.2

Weight (kDa)

8.9

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trm112p PF03966 62 - 100 2.1e-09 Trm112p-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 323
AccII CGCG 1 cut(s) 6
AciI CCGC 3 cut(s) 167, 212, 320
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 2 cut(s) 100, 315
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 2 cut(s) 110, 432
AluI AGCT 2 cut(s) 110, 432
Alw21I GWGCWC 3 cut(s) 94, 112, 127
Alw26I GTCTC 1 cut(s) 59
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 250
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AspLEI GCGC 2 cut(s) 6, 8
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 148, 428
AvaII GGWCC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 230
BanII GRGCYC 2 cut(s) 112, 180
Bbv12I GWGCWC 3 cut(s) 94, 112, 127
BccI CCATC 2 cut(s) 290, 317
BciVI GTATCC 1 cut(s) 294
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 219, 411
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmcAI AGTACT 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 366
BmsI GCATC 5 cut(s) 154, 256, 321, 334, 416
BplI GAGNNNNNCTC 2 cut(s) 76, 108
Bpu10I CCTNAGC 2 cut(s) 72, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse21I CCTNAGG 1 cut(s) 230
BseGI GGATG 3 cut(s) 301, 328, 349
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 5 cut(s) 86, 107, 116, 125, 221
BsePI GCGCGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 3 cut(s) 94, 112, 127
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 4 cut(s) 94, 112, 127, 180
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 3 cut(s) 167, 212, 320
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 5 cut(s) 85, 106, 115, 124, 222
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 366
BssHII GCGCGC 1 cut(s) 4
BssMI GATC 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 6, 212, 405
BstDEI CTNAG 6 cut(s) 72, 93, 102, 111, 230, 310
BstF5I GGATG 3 cut(s) 301, 328, 349
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 2 cut(s) 6, 8
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 3 cut(s) 43, 68, 220
BstNSI RCATGY 1 cut(s) 407
BstUI CGCG 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 230
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 3 cut(s) 301, 328, 349
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 6, 212, 405
CfoI GCGC 2 cut(s) 6, 8
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 99, 314
CviAII CATG 1 cut(s) 404
CviJI RGCY 8 cut(s) 21, 71, 110, 170, 178, 395, 425, 432
CviKI_1 RGCY 8 cut(s) 21, 71, 110, 170, 178, 395, 425, 432
CviQI GTAC 2 cut(s) 99, 314
DdeI CTNAG 6 cut(s) 72, 93, 102, 111, 230, 310
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 2 cut(s) 112, 180
Eco47I GGWCC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 230
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 365
EcoRI GAATTC 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 409
EcoT38I GRGCYC 2 cut(s) 112, 180
FaeI CATG 1 cut(s) 407
FaiI YATR 3 cut(s) 193, 290, 405
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 378
FatI CATG 1 cut(s) 403
FauI CCCGC 1 cut(s) 219
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 3 cut(s) 308, 335, 356
FriOI GRGCYC 2 cut(s) 112, 180
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 219, 411
GlaI GCGC 2 cut(s) 5, 7
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 170
HhaI GCGC 2 cut(s) 6, 8
Hin1II CATG 1 cut(s) 407
Hin6I GCGC 2 cut(s) 4, 6
HinP1I GCGC 2 cut(s) 4, 6
HinfI GANTC 3 cut(s) 116, 301, 440
HphI GGTGA 2 cut(s) 148, 428
Hpy188I TCNGA 4 cut(s) 96, 105, 159, 439
Hpy188III TCNNGA 2 cut(s) 113, 120
Hpy99I CGWCG 2 cut(s) 82, 85
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 3 cut(s) 347, 387, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 68, 220
HpyF3I CTNAG 6 cut(s) 72, 93, 102, 111, 230, 310
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 1 cut(s) 407
HspAI GCGC 2 cut(s) 4, 6
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 59, 98, 105, 159, 242, 330, 381
LweI GCATC 5 cut(s) 154, 256, 321, 334, 416
MaeI CTAG 2 cut(s) 219, 411
MaeII ACGT 1 cut(s) 355
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 371
MfeI CAATTG 1 cut(s) 14
MhlI GDGCHC 4 cut(s) 94, 112, 127, 180
MluCI AATT 2 cut(s) 14, 250
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 6 cut(s) 78, 134, 181, 225, 235, 355
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 3 cut(s) 41, 150, 398
MspA1I CMGCKG 1 cut(s) 320
MunI CAATTG 1 cut(s) 14
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 3 cut(s) 43, 68, 220
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 407
NlaIV GGNNCC 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 1 cut(s) 407
PaeI GCATGC 1 cut(s) 407
PauI GCGCGC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 301, 440
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PpuMI RGGWCCY 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 1 cut(s) 365
PspPPI RGGWCCY 1 cut(s) 365
PteI GCGCGC 1 cut(s) 4
RsaI GTAC 2 cut(s) 100, 315
RsaNI GTAC 2 cut(s) 99, 314
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 3 cut(s) 41, 150, 398
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 365
ScaI AGTACT 1 cut(s) 100
SchI GAGTC 1 cut(s) 125
SduI GDGCHC 4 cut(s) 94, 112, 127, 180
SetI ASST 7 cut(s) 89, 112, 156, 236, 358, 370, 434
SfaNI GCATC 5 cut(s) 154, 256, 321, 334, 416
SinI GGWCC 1 cut(s) 365
SphI GCATGC 1 cut(s) 407
Sse9I AATT 2 cut(s) 14, 250
SsiI CCGC 3 cut(s) 167, 212, 320
SspMI CTAG 2 cut(s) 219, 411
SstI GAGCTC 1 cut(s) 112
TaiI ACGT 1 cut(s) 358
TasI AATT 2 cut(s) 14, 250
TatI WGTACW 1 cut(s) 98
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 301, 440
Tru1I TTAA 3 cut(s) 41, 150, 398
Tru9I TTAA 3 cut(s) 41, 150, 398
TscAI CASTG 1 cut(s) 268
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 407
XspI CTAG 2 cut(s) 219, 411
ZrmI AGTACT 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.