Rmu_sc0002790.1_g000024

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002790.1
OG0014540
Physical Location & Seq
Forward (+)
91534 .. 93284
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
atgtccttgaatggaatgactttgtctagtttccttttctttcagccaaaactttggggcgctcgtgcgagcccgacccggcccaagtgcctaaagagcgcaacagtagtaccctactggcctctaaaacccctatttgcgaaatcagaagaagaagacgcaaaacgaagccaaaaagcaatggcggttccgggcaggggtttagtggaggctgacgacaacgatgacgaaaacgctctctttgaagaagagggtttggaggacctcgactctcacgcgcctcctcacctacgcgccatcgctgacgccactcagctcggcgacctcgacgccctccgactcgctctcgataacttagaaggcagtattgatgaaccagtggaagatggggacacagctctgcatctggcttgtctctatggtaaactttcttgtgtccagttgcttttggagaggggggcaaacttggaggctaaggatgaagatggagctattcctctgcatgatgcttgtgctgggggatacactgagatagttcaacttctagttaacagtgctaatgacaccgagcgtgtaaagagaatgctagaagcagttgacgctgaaggtgatactcctctgcatcatgcagccagaggtgagcatgctgatattataagattgttgctggcttctggagcttctcctacaagggcaaacctgtatggaaagatcccaagtgagttaccagaaccgaacacagaagccaaggggattttggaggctgctgctgatgctatggcatgccagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5

Protein Analysis

263

Amino Acids

28.27

Weight (kDa)

4.58

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 103 - 186 6.8e-15 Ankyrin repeats (3 copies)
Ank_4 PF13637 106 - 150 1.9e-06 Ankyrin repeats (many copies)
Ank_5 PF13857 128 - 167 1.1e-07 Ankyrin repeats (many copies)
Ank PF00023 129 - 160 2e-09 Ankyrin repeat
Ank_KRIT1 PF24521 131 - 245 1.4e-06 KRIT1 ankyrin-repeats domain
Ank_4 PF13637 137 - 183 1.3e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 165 - 231 2.6e-11 Ankyrin repeats (3 copies)
Ank PF00023 203 - 233 2.2e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014540)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09890 AT3G09890
fragaria_vesca FvH4_6g16830
malus_domestica MD12G1106800.v1.1
prunus_persica Prupe.7G125700_v2.0.a1
pyrus_communis pycom12g10730
rosa_chinensis RchiOBHm_Chr3g0470841
rosa_laevigata RLG00000024241
rosa_multiflora Rmu_co8290787.1_g000001 Rmu_sc0002790.1_g000024
rosa_roxburghii Rroxscaffold_6G00410490
rosa_rugosa Rorug03G0113100
rosa_samantha Rh3AG162800 Rh3BG187900 Rh3CG177900 Rh3DG187900
rosa_wichuraiana Rw3G015330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 656
AccII CGCG 2 cut(s) 278, 294
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 706
AcuI CTGAAG 1 cut(s) 624
AcyI GRCGYC 2 cut(s) 306, 330
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 10, 245, 539
AluBI AGCT 4 cut(s) 316, 398, 491, 680
AluI AGCT 4 cut(s) 316, 398, 491, 680
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 1 cut(s) 706
AoxI GGCC 2 cut(s) 80, 119
ApeKI GCWGC 3 cut(s) 629, 764, 767
AspLEI GCGC 4 cut(s) 62, 101, 280, 296
AspS9I GGNCC 2 cut(s) 81, 262
AsuC2I CCSGG 2 cut(s) 79, 192
AsuHPI GGTGA 3 cut(s) 278, 620, 650
AvaII GGWCC 1 cut(s) 262
BaeI ACNNNNGTAYC 2 cut(s) 93, 126
BanII GRGCYC 1 cut(s) 74
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 641, 751, 754
BccI CCATC 3 cut(s) 305, 380, 479
BciVI GTATCC 1 cut(s) 515
BcnI CCSGG 2 cut(s) 79, 192
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 3 cut(s) 27, 545, 587
BfoI RGCGCY 1 cut(s) 63
BfuI GTATCC 1 cut(s) 515
BisI GCNGC 3 cut(s) 630, 765, 768
BlsI GCNGC 3 cut(s) 631, 766, 769
Bme1390I CCNGG 2 cut(s) 79, 192
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 81, 262
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 79, 192
BmsI GCATC 4 cut(s) 412, 496, 631, 763
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 2 cut(s) 79, 192
BsaHI GRCGYC 2 cut(s) 306, 330
BsaJI CCNNGG 1 cut(s) 747
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 4 cut(s) 122, 377, 439, 787
Bse3DI GCAATG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 747
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 326, 519
BseNI ACTGG 4 cut(s) 122, 377, 439, 787
BseRI GAGGAG 2 cut(s) 273, 606
BseXI GCAGC 3 cut(s) 641, 751, 754
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 2 cut(s) 278, 294
BshFI GGCC 2 cut(s) 82, 121
BsiSI CCGG 2 cut(s) 79, 191
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 2 cut(s) 82, 121
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 711
BspACI CCGC 1 cut(s) 185
BspANI GGCC 2 cut(s) 82, 121
BspCNI CTCAG 2 cut(s) 325, 520
BspFNI CGCG 2 cut(s) 278, 294
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 4 cut(s) 122, 377, 439, 787
BssECI CCNNGG 1 cut(s) 747
BssMI GATC 1 cut(s) 711
BssNI GRCGYC 2 cut(s) 306, 330
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 747
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 106, 554
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 306, 330
BstC8I GCNNGC 4 cut(s) 70, 645, 669, 784
BstDEI CTNAG 4 cut(s) 312, 355, 474, 528
BstF5I GGATG 1 cut(s) 484
BstFNI CGCG 2 cut(s) 278, 294
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 4 cut(s) 62, 101, 280, 296
BstKTI GATC 1 cut(s) 714
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 1 cut(s) 711
BstMWI GCNNNNNNNGC 4 cut(s) 96, 599, 677, 773
BstNSI RCATGY 2 cut(s) 647, 786
BstSCI CCNGG 2 cut(s) 77, 190
BstUI CGCG 2 cut(s) 278, 294
BstV1I GCAGC 3 cut(s) 641, 751, 754
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 711
BstXI CCANNNNNNTGG 1 cut(s) 54
BstYI RGATCY 1 cut(s) 711
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 2 cut(s) 82, 121
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 484
BtsIMutI CAGTG 3 cut(s) 384, 525, 559
Cac8I GCNNGC 4 cut(s) 70, 645, 669, 784
CfoI GCGC 4 cut(s) 62, 101, 280, 296
Cfr13I GGNCC 2 cut(s) 81, 262
CseI GACGC 4 cut(s) 167, 314, 338, 608
Csp6I GTAC 1 cut(s) 110
CviAII CATG 4 cut(s) 503, 626, 644, 783
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 4 cut(s) 312, 355, 474, 528
DpnI GATC 1 cut(s) 713
DpnII GATC 1 cut(s) 711
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 747
EcoT38I GRGCYC 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 4 cut(s) 506, 629, 647, 786
FaiI YATR 8 cut(s) 420, 504, 627, 645, 656, 705, 779, 784
FaqI GGGAC 1 cut(s) 404
FatI CATG 4 cut(s) 502, 625, 643, 782
Fnu4HI GCNGC 3 cut(s) 630, 765, 768
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 630, 765, 768
FspBI CTAG 3 cut(s) 27, 545, 587
GlaI GCGC 4 cut(s) 61, 100, 279, 295
GluI GCNGC 3 cut(s) 630, 765, 768
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 2 cut(s) 82, 121
HapII CCGG 2 cut(s) 79, 191
HgaI GACGC 4 cut(s) 167, 314, 338, 608
HhaI GCGC 4 cut(s) 62, 101, 280, 296
Hin1I GRCGYC 2 cut(s) 306, 330
Hin1II CATG 4 cut(s) 506, 629, 647, 786
Hin6I GCGC 4 cut(s) 60, 99, 278, 294
HinP1I GCGC 4 cut(s) 60, 99, 278, 294
HincII GTYRAC 2 cut(s) 550, 598
HindII GTYRAC 2 cut(s) 550, 598
HinfI GANTC 2 cut(s) 269, 339
HpaI GTTAAC 1 cut(s) 550
HpaII CCGG 2 cut(s) 79, 191
HphI GGTGA 3 cut(s) 278, 620, 650
Hpy166II GTNNAC 3 cut(s) 425, 550, 598
Hpy188I TCNGA 2 cut(s) 148, 338
Hpy188III TCNNGA 2 cut(s) 347, 675
Hpy8I GTNNAC 3 cut(s) 425, 550, 598
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 353, 599
HpyCH4III ACNGT 2 cut(s) 106, 554
HpyCH4V TGCA 4 cut(s) 403, 502, 622, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 599, 677, 773
HpyF3I CTNAG 4 cut(s) 312, 355, 474, 528
Hsp92I GRCGYC 2 cut(s) 306, 330
Hsp92II CATG 4 cut(s) 506, 629, 647, 786
HspAI GCGC 4 cut(s) 60, 99, 278, 294
KspAI GTTAAC 1 cut(s) 550
Kzo9I GATC 1 cut(s) 711
LmnI GCTCC 2 cut(s) 488, 677
Lsp1109I GCAGC 3 cut(s) 641, 751, 754
LweI GCATC 4 cut(s) 412, 496, 631, 763
MaeI CTAG 3 cut(s) 27, 545, 587
MaeIII GTNAC 1 cut(s) 723
MalI GATC 1 cut(s) 713
MboI GATC 1 cut(s) 711
MboII GAAGA 7 cut(s) 161, 164, 167, 257, 260, 395, 494
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 1 cut(s) 74
MlyI GAGTC 2 cut(s) 263, 333
MmeI TCCRAC 1 cut(s) 361
MseI TTAA 1 cut(s) 549
MspI CCGG 2 cut(s) 79, 191
MspR9I CCNGG 2 cut(s) 79, 192
Mva1269I GAATGC 1 cut(s) 588
MvnI CGCG 2 cut(s) 278, 294
MwoI GCNNNNNNNGC 4 cut(s) 96, 599, 677, 773
NciI CCSGG 2 cut(s) 79, 192
NdeII GATC 1 cut(s) 711
NlaIII CATG 4 cut(s) 506, 629, 647, 786
NlaIV GGNNCC 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 297
NspI RCATGY 2 cut(s) 647, 786
PaeI GCATGC 2 cut(s) 647, 786
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 1 cut(s) 588
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 3 cut(s) 631, 766, 769
PleI GAGTC 2 cut(s) 263, 333
PpsI GAGTC 2 cut(s) 263, 333
PpuMI RGGWCCY 1 cut(s) 262
PsiI TTATAA 1 cut(s) 656
Psp5II RGGWCCY 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 2 cut(s) 81, 262
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 3 cut(s) 630, 765, 768
Sau3AI GATC 1 cut(s) 711
Sau96I GGNCC 2 cut(s) 81, 262
SchI GAGTC 2 cut(s) 263, 333
ScrFI CCNGG 2 cut(s) 79, 192
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 4 cut(s) 412, 496, 631, 763
SinI GGWCC 1 cut(s) 262
SphI GCATGC 2 cut(s) 647, 786
SsiI CCGC 1 cut(s) 185
SspMI CTAG 3 cut(s) 27, 545, 587
StyD4I CCNGG 2 cut(s) 77, 190
StyI CCWWGG 1 cut(s) 747
TaaI ACNGT 2 cut(s) 106, 554
TaqI TCGA 3 cut(s) 267, 327, 348
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 3 cut(s) 384, 532, 559
TseI GCWGC 3 cut(s) 629, 764, 767
TspDTI ATGAA 2 cut(s) 387, 495
TspRI CASTG 3 cut(s) 384, 532, 559
Tth111I GACNNNGTC 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 262
XceI RCATGY 2 cut(s) 647, 786
XcmI CCANNNNNNNNNTGG 1 cut(s) 754
XspI CTAG 3 cut(s) 27, 545, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.