Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002867.1

Orthogroup ID

OG0013067

Physical Location & Seq

Genomic Coordinates Reverse (-)

51490 .. 52440

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgaaaggtgaatacggaggtggtgacaccaagagtgaaacccaaaacatgttctcgaagcttcaccatcataacaacccacagtctcatcctcaccctcaccacccccagcagcagcagcagcagcagttccaccaccatttctccaacccatttcagattacgccagtccgcgaatgtcagcctcaaacttctgaagaagaagacaccagccgaaccagcagcggcaccgccaccaagcccctcgtttcagatcccaacaaccccaccggcggcgacggcgccactattgaagtcgtccggaggcccaggggccgccctcccggctccaagaacaagcccaagcctcccgtcatcataacccgcgacaccgagcccgccatgagcccttacattctcgaagtccccggcggaagcgacgtcgtcgacgccgtctcccgattctgctgccgcaagaacatcggcctcgtcatcctcaccggctccggaaccgtcgccaacgttactctacgtcagccgtccactactccaggagctacagttaccttccacggccgcttcgacatcctctccatctccgccaccttccttccgcaaacgacggcggccggcccgatccccaacggcttcaccatctccctcgccggaccgcagggccagatcgtcggaggactcgtcgccggggccttgatagctgccggaactgtttacatcatcgcggcgtcgttcaacagcccttcgtaccatcggctgccggtggaggacgaggcggcgcccaggaactcgctgtcgggaggggaagctcagtcgccgcctctttcgactggcggggagagtgggggtcacgcgccggcacagtcttgtgggatggccatgtacagctgtcacatgcctaccgatgttatctgggctccgactgcaagacaaccacctcctccgccaccctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

316

Amino Acids

33.39

Weight (kDa)

6.92

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	130 - 244	7.9e-20	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14490 AT1G14490 AT5G49700
fragaria_vesca	FvH4_5g35490
malus_domestica	MD08G1196300.v1.1 MD15G1384100.v1.1
prunus_persica	Prupe.1G530300_v2.0.a1
pyrus_communis	pycom08g16870
rosa_chinensis	RchiOBHm_Chr7g0236871
rosa_laevigata	RLG00000001054
rosa_multiflora	Rmu_sc0002867.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224740
rosa_rugosa	Rorug07G0300400
rosa_samantha	Rh7AG455300 Rh7BG426500 Rh7CG474000 Rh7DG443300
rosa_wichuraiana	Rw7G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	423
AccB1I	GGYRCC	3 cut(s)	227, 281, 772
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	4 cut(s)	174, 366, 719, 848
AccIII	TCCGGA	2 cut(s)	300, 485
AclI	AACGTT	1 cut(s)	501
AclWI	GGATC	2 cut(s)	248, 610
AcoI	YGGCCR	3 cut(s)	553, 606, 870
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	5 cut(s)	282, 420, 429, 722, 773
AfaI	GTAC	2 cut(s)	743, 878
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	293, 730
AjnI	CCWGG	3 cut(s)	308, 529, 776
AluBI	AGCT	5 cut(s)	61, 536, 695, 803, 882
AluI	AGCT	5 cut(s)	61, 536, 695, 803, 882
Alw26I	GTCTC	2 cut(s)	90, 439
AlwI	GGATC	2 cut(s)	248, 610
Aor13HI	TCCGGA	2 cut(s)	300, 485
AoxI	GGCC	9 cut(s)	305, 313, 463, 553, 606, 610, 655, 684, 870
ApeKI	GCWGC	9 cut(s)	112, 115, 118, 121, 124, 222, 447, 695, 751
AspLEI	GCGC	3 cut(s)	284, 775, 850
AspS9I	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
AsuC2I	CCSGG	3 cut(s)	324, 408, 682
AsuHPI	GGTGA	7 cut(s)	20, 35, 56, 86, 92, 469, 622
AvaII	GGWCC	1 cut(s)	647
BalI	TGGCCA	1 cut(s)	872
BanI	GGYRCC	3 cut(s)	227, 281, 772
BanII	GRGCYC	3 cut(s)	378, 389, 913
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	9 cut(s)	124, 127, 130, 133, 136, 234, 434, 682, 738
BccI	CCATC	5 cut(s)	75, 581, 641, 753, 862
BceAI	ACGGC	6 cut(s)	295, 416, 502, 568, 618, 640
BcgI	CGANNNNNNTGC	4 cut(s)	429, 442, 463, 476
BciT130I	CCWGG	3 cut(s)	310, 531, 778
BcnI	CCSGG	3 cut(s)	324, 408, 682
BcoDI	GTCTC	2 cut(s)	90, 439
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	2 cut(s)	285, 776
BglI	GCCNNNNNGGC	1 cut(s)	324
Bme1390I	CCNGG	6 cut(s)	310, 324, 408, 531, 682, 778
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
BmiI	GGNNCC	9 cut(s)	229, 283, 314, 328, 484, 490, 685, 774, 912
BmrFI	CCNGG	6 cut(s)	310, 324, 408, 531, 682, 778
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	513
BpuMI	CCSGG	3 cut(s)	324, 408, 682
BsaHI	GRCGYC	5 cut(s)	282, 420, 429, 722, 773
BsaJI	CCNNGG	6 cut(s)	308, 309, 406, 550, 681, 776
BsaWI	WCCGGW	2 cut(s)	300, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	5 cut(s)	269, 479, 608, 754, 850
Bse1I	ACTGG	2 cut(s)	167, 829
BseAI	TCCGGA	2 cut(s)	300, 485
BseBI	CCWGG	3 cut(s)	310, 531, 778
BseDI	CCNNGG	6 cut(s)	308, 309, 406, 550, 681, 776
BseGI	GGATG	4 cut(s)	88, 471, 564, 873
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	2 cut(s)	167, 829
BseRI	GAGGAG	1 cut(s)	924
BseX3I	CGGCCG	2 cut(s)	553, 606
BseXI	GCAGC	9 cut(s)	124, 127, 130, 133, 136, 234, 434, 682, 738
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	4 cut(s)	174, 366, 719, 848
Bsh1285I	CGRYCG	2 cut(s)	556, 609
BshFI	GGCC	9 cut(s)	307, 315, 465, 555, 608, 612, 657, 686, 872
BshNI	GGYRCC	3 cut(s)	227, 281, 772
BsiEI	CGRYCG	2 cut(s)	556, 609
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	90, 439
BsmBI	CGTCTC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	9 cut(s)	307, 315, 465, 555, 608, 612, 657, 686, 872
Bsp1286I	GDGCHC	3 cut(s)	378, 389, 913
Bsp13I	TCCGGA	2 cut(s)	300, 485
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	3 cut(s)	253, 615, 660
BspANI	GGCC	9 cut(s)	307, 315, 465, 555, 608, 612, 657, 686, 872
BspCNI	CTCAG	1 cut(s)	817
BspEI	TCCGGA	2 cut(s)	300, 485
BspFNI	CGCG	4 cut(s)	174, 366, 719, 848
BspLI	GGNNCC	9 cut(s)	229, 283, 314, 328, 484, 490, 685, 774, 912
BspPI	GGATC	2 cut(s)	248, 610
BspT107I	GGYRCC	3 cut(s)	227, 281, 772
BsrFI	RCCGGY	5 cut(s)	269, 479, 608, 754, 850
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	167, 829
BssAI	RCCGGY	5 cut(s)	269, 479, 608, 754, 850
BssECI	CCNNGG	6 cut(s)	308, 309, 406, 550, 681, 776
BssMI	GATC	3 cut(s)	253, 615, 660
BssNI	GRCGYC	5 cut(s)	282, 420, 429, 722, 773
Bst2UI	CCWGG	3 cut(s)	310, 531, 778
Bst4CI	ACNGT	5 cut(s)	84, 493, 541, 706, 858
BstACI	GRCGYC	5 cut(s)	282, 420, 429, 722, 773
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	3 cut(s)	378, 610, 852
BstDEI	CTNAG	1 cut(s)	804
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	4 cut(s)	88, 471, 564, 873
BstFNI	CGCG	4 cut(s)	174, 366, 719, 848
BstH2I	RGCGCY	2 cut(s)	285, 776
BstHHI	GCGC	3 cut(s)	284, 775, 850
BstKTI	GATC	3 cut(s)	256, 618, 663
BstMAI	GTCTC	2 cut(s)	90, 439
BstMBI	GATC	3 cut(s)	253, 615, 660
BstMCI	CGRYCG	2 cut(s)	556, 609
BstMWI	GCNNNNNNNGC	8 cut(s)	118, 121, 124, 219, 279, 324, 692, 917
BstNI	CCWGG	3 cut(s)	310, 531, 778
BstNSI	RCATGY	2 cut(s)	52, 892
BstSCI	CCNGG	6 cut(s)	308, 322, 406, 529, 680, 776
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	4 cut(s)	174, 366, 719, 848
BstV1I	GCAGC	9 cut(s)	124, 127, 130, 133, 136, 234, 434, 682, 738
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BstZI	CGGCCG	2 cut(s)	553, 606
BsuRI	GGCC	9 cut(s)	307, 315, 465, 555, 608, 612, 657, 686, 872
BtgI	CCRYGG	1 cut(s)	550
BtgZI	GCGATG	1 cut(s)	700
BtsCI	GGATG	4 cut(s)	88, 471, 564, 873
Cac8I	GCNNGC	3 cut(s)	378, 610, 852
CfoI	GCGC	3 cut(s)	284, 775, 850
Cfr10I	RCCGGY	5 cut(s)	269, 479, 608, 754, 850
Cfr13I	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
CpoI	CGGWCCG	1 cut(s)	647
CseI	GACGC	2 cut(s)	437, 711
Csp6I	GTAC	2 cut(s)	742, 877
CspI	CGGWCCG	1 cut(s)	647
CviAII	CATG	4 cut(s)	49, 382, 874, 889
CviQI	GTAC	2 cut(s)	742, 877
DdeI	CTNAG	1 cut(s)	804
DinI	GGCGCC	2 cut(s)	283, 774
DpnI	GATC	3 cut(s)	255, 617, 662
DpnII	GATC	3 cut(s)	253, 615, 660
EaeI	YGGCCR	3 cut(s)	553, 606, 870
EagI	CGGCCG	2 cut(s)	553, 606
EciI	GGCGGA	3 cut(s)	426, 568, 927
EclXI	CGGCCG	2 cut(s)	553, 606
Eco24I	GRGCYC	3 cut(s)	378, 389, 913
Eco47I	GGWCC	1 cut(s)	647
Eco52I	CGGCCG	2 cut(s)	553, 606
Eco57I	CTGAAG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	684
EcoRII	CCWGG	3 cut(s)	308, 529, 776
EcoT38I	GRGCYC	3 cut(s)	378, 389, 913
EgeI	GGCGCC	2 cut(s)	283, 774
EheI	GGCGCC	2 cut(s)	283, 774
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	4 cut(s)	52, 385, 877, 892
FaiI	YATR	6 cut(s)	50, 72, 359, 383, 875, 890
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	4 cut(s)	48, 381, 873, 888
FauI	CCCGC	3 cut(s)	371, 385, 821
FblI	GTMKAC	1 cut(s)	426
FokI	GGATG	4 cut(s)	75, 458, 551, 880
FriOI	GRGCYC	3 cut(s)	378, 389, 913
FseI	GGCCGGCC	1 cut(s)	612
GlaI	GCGC	3 cut(s)	283, 774, 849
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	2 cut(s)	285, 776
HaeIII	GGCC	9 cut(s)	307, 315, 465, 555, 608, 612, 657, 686, 872
HgaI	GACGC	2 cut(s)	437, 711
HhaI	GCGC	3 cut(s)	284, 775, 850
Hin1I	GRCGYC	5 cut(s)	282, 420, 429, 722, 773
Hin1II	CATG	4 cut(s)	52, 385, 877, 892
Hin6I	GCGC	3 cut(s)	282, 773, 848
HinP1I	GCGC	3 cut(s)	282, 773, 848
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	441, 672
HphI	GGTGA	7 cut(s)	20, 35, 56, 86, 92, 469, 622
Hpy166II	GTNNAC	3 cut(s)	427, 522, 709
Hpy188I	TCNGA	5 cut(s)	159, 196, 253, 668, 915
Hpy188III	TCNNGA	6 cut(s)	55, 301, 398, 438, 486, 792
Hpy8I	GTNNAC	3 cut(s)	427, 522, 709
HpyAV	CCTTC	4 cut(s)	556, 595, 599, 747
HpyCH4III	ACNGT	5 cut(s)	84, 493, 541, 706, 858
HpyCH4IV	ACGT	3 cut(s)	420, 501, 511
HpyCH4V	TGCA	1 cut(s)	920
HpyF10VI	GCNNNNNNNGC	8 cut(s)	118, 121, 124, 219, 279, 324, 692, 917
HpyF3I	CTNAG	1 cut(s)	804
HpySE526I	ACGT	3 cut(s)	420, 501, 511
Hsp92I	GRCGYC	5 cut(s)	282, 420, 429, 722, 773
Hsp92II	CATG	4 cut(s)	52, 385, 877, 892
HspAI	GCGC	3 cut(s)	282, 773, 848
KasI	GGCGCC	2 cut(s)	281, 772
Kpn2I	TCCGGA	2 cut(s)	300, 485
KroI	GCCGGC	2 cut(s)	608, 850
KroNI	GCCGGC	2 cut(s)	610, 852
Kzo9I	GATC	3 cut(s)	253, 615, 660
LmnI	GCTCC	4 cut(s)	332, 488, 533, 916
Lsp1109I	GCAGC	9 cut(s)	124, 127, 130, 133, 136, 234, 434, 682, 738
MaeII	ACGT	3 cut(s)	420, 501, 511
MaeIII	GTNAC	5 cut(s)	23, 502, 541, 842, 884
MalI	GATC	3 cut(s)	255, 617, 662
MboI	GATC	3 cut(s)	253, 615, 660
MboII	GAAGA	3 cut(s)	209, 212, 215
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	3 cut(s)	378, 389, 913
MlsI	TGGCCA	1 cut(s)	872
MluNI	TGGCCA	1 cut(s)	872
Mly113I	GGCGCC	2 cut(s)	282, 773
MlyI	GAGTC	1 cut(s)	666
MmeI	TCCRAC	3 cut(s)	171, 646, 938
Mox20I	TGGCCA	1 cut(s)	872
MroI	TCCGGA	2 cut(s)	300, 485
MroNI	GCCGGC	2 cut(s)	608, 850
MscI	TGGCCA	1 cut(s)	872
Msp20I	TGGCCA	1 cut(s)	872
MspA1I	CMGCKG	2 cut(s)	225, 882
MspR9I	CCNGG	6 cut(s)	310, 324, 408, 531, 682, 778
MvaI	CCWGG	3 cut(s)	310, 531, 778
MvnI	CGCG	4 cut(s)	174, 366, 719, 848
MwoI	GCNNNNNNNGC	8 cut(s)	118, 121, 124, 219, 279, 324, 692, 917
NaeI	GCCGGC	2 cut(s)	610, 852
NarI	GGCGCC	2 cut(s)	282, 773
NciI	CCSGG	3 cut(s)	324, 408, 682
NdeII	GATC	3 cut(s)	253, 615, 660
NgoMIV	GCCGGC	2 cut(s)	608, 850
NlaIII	CATG	4 cut(s)	52, 385, 877, 892
NlaIV	GGNNCC	9 cut(s)	229, 283, 314, 328, 484, 490, 685, 774, 912
NmuCI	GTSAC	3 cut(s)	23, 842, 884
NspI	RCATGY	2 cut(s)	52, 892
PasI	CCCWGGG	1 cut(s)	309
PciI	ACATGT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	3 cut(s)	429, 558, 672
PdiI	GCCGGC	2 cut(s)	610, 852
PfeI	GAWTC	1 cut(s)	441
PflFI	GACNNNGTC	2 cut(s)	422, 431
PfoI	TCCNGGA	1 cut(s)	529
PleI	GAGTC	1 cut(s)	666
PluTI	GGCGCC	2 cut(s)	285, 776
PpsI	GAGTC	1 cut(s)	666
PscI	ACATGT	1 cut(s)	48
Psp1406I	AACGTT	1 cut(s)	501
Psp6I	CCWGG	3 cut(s)	308, 529, 776
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	3 cut(s)	308, 529, 776
PspN4I	GGNNCC	9 cut(s)	229, 283, 314, 328, 484, 490, 685, 774, 912
PspPI	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
PsuI	RGATCY	1 cut(s)	253
PsyI	GACNNNGTC	2 cut(s)	422, 431
PvuII	CAGCTG	1 cut(s)	882
RigI	GGCCGGCC	1 cut(s)	612
RsaI	GTAC	2 cut(s)	743, 878
RsaNI	GTAC	2 cut(s)	742, 877
Rsr2I	CGGWCCG	1 cut(s)	647
RsrII	CGGWCCG	1 cut(s)	647
SalI	GTCGAC	1 cut(s)	425
Sau3AI	GATC	3 cut(s)	253, 615, 660
Sau96I	GGNCC	6 cut(s)	306, 313, 611, 647, 655, 684
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	6 cut(s)	310, 324, 408, 531, 682, 778
SduI	GDGCHC	3 cut(s)	378, 389, 913
SfcI	CTRYAG	1 cut(s)	537
SfoI	GGCGCC	2 cut(s)	283, 774
SgrAI	CRCCGGYG	1 cut(s)	269
SgrDI	CGTCGACG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	647
SspDI	GGCGCC	2 cut(s)	281, 772
StyD4I	CCNGG	6 cut(s)	308, 322, 406, 529, 680, 776
TaaI	ACNGT	5 cut(s)	84, 493, 541, 706, 858
TaiI	ACGT	3 cut(s)	423, 504, 514
TaqI	TCGA	5 cut(s)	56, 399, 426, 561, 821
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	9 cut(s)	228, 276, 318, 453, 558, 608, 722, 773, 814
TfiI	GAWTC	1 cut(s)	441
TseFI	GTSAC	3 cut(s)	23, 842, 884
TseI	GCWGC	9 cut(s)	112, 115, 118, 121, 124, 222, 447, 695, 751
Tsp45I	GTSAC	3 cut(s)	23, 842, 884
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	30
Tth111I	GACNNNGTC	2 cut(s)	422, 431
VpaK11BI	GGWCC	1 cut(s)	647
XceI	RCATGY	2 cut(s)	52, 892
XmiI	GTMKAC	1 cut(s)	426
ZraI	GACGTC	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.