Rmu_sc0002870.1_g000003

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002870.1
OG0007774
Physical Location & Seq
Forward (+)
12804 .. 19028
6225 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3627 bp
atgaacttgtttctctcatctcaaaagctcaagtcatctcacatctctgccgacttagctgctctgctacaaggtcgtatctcacactctcatctccttcaaatccatgcccaaatctttgttcttggtgctcaccacgacgatttgatagccactcgtctcatcggccactacccatctcacattgctctccgtgtctttcatgccctccgaaaacccaatgtgttccctttcaacgccatcatcagggtcttcgccgaacagggtctcttctccagtgccttctccctcttcaaaaccctgaaacagagctccctttcgcccaatgacttcaccttctctttcctcctcaagtcgtgtagctttcgttgcggggattctgtttatgtcaagcaaattcacacccatgttgtgaggatgggctttcttcgcaacgagttcgtctgtaatggcctgcttgctgtgtatgctaaggggctcaaggatttgggttctgcacgccaggtgtttgatgaaatgcctgacaagggtgtggtttgctgttggacgtctttaattgcgggctatgctcagtcagggaaggctgaggaagctctgcggttattcgtcgtgatggttaagggagatttgcggccggaggatgatacaatggtcagtgttttatcagcttgttcgaatcttgacatgtcaaagattgagaaatgggttttgattctgtcccgagttttcgacaatgtagattctaagaatgttggttccgactccgttaacactgtactggtatatctgtatgggaaatggggtaaaatagagaagagcagggaagcatttgatggaatttctgacagtgggaagccaagtgtgctgccttggaatgctattattggtgcatacgttcagaatggttttcctgtggagtctttaagtgttttccgcgtaatggtgggagatcccactcgtaaacctaaccatgttactatggtcagtgtgctttcagcctgtgctcaagttggcgatttagagcttggtaggtgggttcatgaatacttgaaatctaaaggaaatagaggtgtgattggatcaaacagaattctagccactgcattgattgacatgtattccaaatgtgggagtttggagaaggcaaaagaggtttttcatcagatggtgtcgaaagacattgtttcattcaatgctatgatcatgggtcttgcagttaacagtgaaggagaggaagccctgaggctattctcaaaaatccaagattttggtttacaacccaatgctggtaccttccttggtgctttatgtgcatgcaaccactcaggtttttcagaggaagggcatcaaatattcaaggatatgacctcaggcttttccatttcacctaaattagaacattatgcctgctatattgatctccttgcccgagtaggcctagttgaagaagctctcgaggttgtaacttccatgccttttgagcctaacagtattgtgtggggtgctctgcttggaggttgcctgctccactctagattagactatgctgaatatgtttcccgtaaacttgttcaatctgaccccaacaataccgggggttatgtcatgctggctaatgcatttgcgtctgatcatcgatggggtgatgtctcttctctgaggcggtttatgagggaaaagggagtgaccaagcagcctggctgtagttggatcagcattaatggtgttgttaggatgagcagaagaagatttgggtcagttcgatctgctaacaatctagtatatggagatagaacacttgaaggtagtccttgtcctttgctcaagagacaacagcccccatttgattccccagagtccccttcaagagcaagagaactccatatggcacggagggacataggtcgatacagagaaaccagaactgacacagactgggtcaaagaacaggcgcaaattgagttatatgatgcaaagaagatagccaaagatctctcctcagtaatcgaggaatcaaacttgatggccagaggacacacgagagagattgaagcactaaggagaccgagaaggcgtggagataatcgagtattattgcctgttgggaatgatcatgtggagaataacaaaaattatgaacaagtcatgagagaagtgcagcttttgaaacaggaactgagcatgctcaagatcgatatggctaatgttttggaagagaaatcgcaggcagagaagcaagcagaagccgcaaatgaaaagatgatgttttatacaagctcggcggaagctatcaggaaggagattgaggaagctgatgaagagcaagtgctagttgagttggctcagattgaagccttgaaagaatttggagatattgaagctcagagacaacaagaagccaatcaactctcatctgcagtggaggaaaccaggaaaaaagtgagagatattactgaagagattgatcactcaaaacaagttgaaaccaaattgtctgtcacattgtctaatgtcgatgcgttacggaatgaactacagctagttaaaggaatggacaaaagtagtagtcaaatgactgatagctttcagctttcggaaaccagtctccaaagaacagaggactcggaagcttcacccttgttacactcaatcacagaagaactagaggcggcaaagaaagaactggctgcagtaaaggaagaaggattccagtacatggcctccatggatgttataagaaacgagatgaagcatatcacagatcagacagctcggataaagaaggcagaggataaagcagatttaactgttcaaaccctcaattcaaagtttctcagagccaaagccaagttggaagctttatgtgcatctgaagaaaaagcaaaatcaattcaatccagtctctcactcactcttgaacagcttaagacagatgctgatgccgcaaacaaagagaaggagaatgccagtgaagaagctgcaaccattaagtcggaaatactcaagattgaatcggatatagacatagctgaagaaaaatttgaggctgcaatgcaagagcttgaagcagtaaaatcttcagaggctgtagctcttgaaaacctcaaaacacttattgagaataccatgagagctagagcttctgcagctcagaatagttcttcaattaccatatccaagtttgaatatgagtacttgactggacgtgcagttggggctgaagaaattgctgataaaaaggtagcagctgctcaggcttgggttgaagctataaaggccagtgagaaggaaatattgataaagatagacttagctgagaaagagctgaaagaaacgagggtggaggaggtacagcaagaggcctctagacctgaaagacaaccttctggacagaggatgctggagggacaagaattacaaatttggagacaaaagagggacagaaatgcagcatctggaaaccggcgaactaatggaaatttaactccatcaaggcgagccaagttccgaaaatctgcctctcctggagctcggcatatgaataatttccccattcagaaaaagacgaaggtaatgcctaatctgggcaagttttttggcggtaagagaattgcaaaagatgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

1208

Amino Acids

135.04

Weight (kDa)

6.98

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 73 - 120 1.5e-09 PPR repeat family
PPR_2 PF13041 179 - 225 7.2e-07 PPR repeat family
PPR_2 PF13041 392 - 433 1.5e-06 PPR repeat family
E_motif PF20431 510 - 571 5.8e-15 E motif
WEMBL PF05701 625 - 1147 2.7e-26 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2735
AatII GACGTC 1 cut(s) 551
Acc65I GGTACC 1 cut(s) 1289
AccB1I GGYRCC 1 cut(s) 1289
AccB7I CCANNNNNTGG 1 cut(s) 2716
AccII CGCG 1 cut(s) 936
AclWI GGATC 3 cut(s) 944, 1087, 1718
AcoI YGGCCR 3 cut(s) 166, 632, 2025
AcsI RAATTY 7 cut(s) 396, 837, 1089, 2363, 3038, 3420, 3478
AcuI CTGAAG 5 cut(s) 2475, 2892, 3051, 3063, 3240
AcyI GRCGYC 1 cut(s) 548
AfaI GTAC 5 cut(s) 777, 1291, 2714, 3194, 3351
AfiI CCNNNNNNNGG 7 cut(s) 246, 527, 940, 1128, 1286, 2716, 3584
AflII CTTAAG 1 cut(s) 2924
AflIII ACRYGT 2 cut(s) 684, 1113
AjiI CACGTC 1 cut(s) 3206
AjnI CCWGG 4 cut(s) 501, 1696, 2429, 3523
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
Alw21I GWGCWC 5 cut(s) 133, 314, 1006, 1507, 3532
Alw26I GTCTC 9 cut(s) 164, 272, 1654, 1822, 2056, 2380, 2609, 2906, 3421
AlwI GGATC 3 cut(s) 944, 1087, 1718
AlwNI CAGNNNCTG 4 cut(s) 2176, 2936, 3086, 3455
Ama87I CYCGRG 3 cut(s) 720, 1428, 1454
AoxI GGCC 8 cut(s) 166, 451, 632, 1435, 2025, 2718, 3276, 3360
ApoI RAATTY 7 cut(s) 396, 837, 1089, 2363, 3038, 3420, 3478
ArsI GACNNNNNNTTYG 2 cut(s) 2481, 2513
AseI ATTAAT 1 cut(s) 1719
Asp700I GAANNNNTTC 1 cut(s) 3545
Asp718I GGTACC 1 cut(s) 1289
AspLEI GCGC 1 cut(s) 1954
AsuC2I CCSGG 1 cut(s) 1594
AsuHPI GGTGA 5 cut(s) 125, 325, 1377, 1655, 2625
AsuII TTCGAA 1 cut(s) 674
AvaI CYCGRG 3 cut(s) 720, 1428, 1454
AxyI CCTNAGG 2 cut(s) 1241, 1369
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BalI TGGCCA 1 cut(s) 2027
BanI GGYRCC 1 cut(s) 1289
BanII GRGCYC 3 cut(s) 314, 480, 3532
BauI CACGAG 1 cut(s) 2038
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 5 cut(s) 133, 314, 1006, 1507, 3532
BbvCI CCTCAGC 1 cut(s) 585
BccI CCATC 9 cut(s) 184, 248, 412, 607, 827, 1159, 1632, 2017, 3496
BcgI CGANNNNNNTGC 6 cut(s) 41, 75, 421, 455, 3556, 3590
BciT130I CCWGG 4 cut(s) 503, 1698, 2431, 3525
BclI TGATCA 4 cut(s) 1200, 1630, 2110, 2464
BcnI CCSGG 1 cut(s) 1594
BcoDI GTCTC 9 cut(s) 164, 272, 1654, 1822, 2056, 2380, 2609, 2906, 3421
BfaI CTAG 9 cut(s) 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366
BfmI CTRYAG 6 cut(s) 1702, 2415, 2534, 2688, 3087, 3144
BfrI CTTAAG 1 cut(s) 2924
BglII AGATCT 1 cut(s) 1990
BmcAI AGTACT 1 cut(s) 3194
Bme1390I CCNGG 5 cut(s) 503, 1594, 1698, 2431, 3525
BmeT110I CYCGRG 3 cut(s) 720, 1428, 1454
BmgBI CACGTC 1 cut(s) 3206
BmiI GGNNCC 2 cut(s) 757, 1291
BmrFI CCNGG 5 cut(s) 503, 1594, 1698, 2431, 3525
BmrI ACTGGG 1 cut(s) 1945
BmsI GCATC 8 cut(s) 1354, 1960, 2506, 2876, 2923, 2929, 3387, 3461
BmuI ACTGGG 1 cut(s) 1945
BoxI GACNNNNGTC 1 cut(s) 1902
BpiI GAAGAC 1 cut(s) 244
BpmI CTGGAG 3 cut(s) 259, 3422, 3546
Bpu10I CCTNAGC 3 cut(s) 471, 585, 3252
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 7 cut(s) 14, 335, 464, 990, 1808, 2171, 2987
BpuMI CCSGG 1 cut(s) 1594
Bsa29I ATCGAT 2 cut(s) 1636, 2193
BsaHI GRCGYC 1 cut(s) 548
BsaI GGTCTC 2 cut(s) 272, 2056
BsaJI CCNNGG 4 cut(s) 869, 1297, 1593, 2724
BsaXI ACNNNNNCTCC 2 cut(s) 2705, 2735
Bsc4I CCNNNNNNNGG 7 cut(s) 246, 527, 940, 1128, 1286, 2716, 3584
Bse118I RCCGGY 1 cut(s) 3462
Bse21I CCTNAGG 2 cut(s) 1241, 1369
Bse3DI GCAATG 2 cut(s) 183, 3057
BseBI CCWGG 4 cut(s) 503, 1698, 2431, 3525
BseCI ATCGAT 2 cut(s) 1636, 2193
BseDI CCNNGG 4 cut(s) 869, 1297, 1593, 2724
BseGI GGATG 5 cut(s) 423, 646, 1740, 2734, 3402
BseLI CCNNNNNNNGG 7 cut(s) 246, 527, 940, 1128, 1286, 2716, 3584
BseMI GCAATG 2 cut(s) 183, 3057
BseRI GAGGAG 3 cut(s) 338, 1987, 3359
BseX3I CGGCCG 1 cut(s) 632
BsgI GTGCAG 3 cut(s) 480, 2177, 3228
Bsh1236I CGCG 1 cut(s) 936
Bsh1285I CGRYCG 1 cut(s) 635
BshFI GGCC 8 cut(s) 168, 453, 634, 1437, 2027, 2720, 3278, 3362
BshNI GGYRCC 1 cut(s) 1289
BshVI ATCGAT 2 cut(s) 1636, 2193
BsiEI CGRYCG 1 cut(s) 635
BsiHKAI GWGCWC 5 cut(s) 133, 314, 1006, 1507, 3532
BsiHKCI CYCGRG 3 cut(s) 720, 1428, 1454
BsiSI CCGG 3 cut(s) 635, 1593, 3463
BslFI GGGAC 5 cut(s) 703, 1843, 1910, 3420, 3452
BslI CCNNNNNNNGG 7 cut(s) 246, 527, 940, 1128, 1286, 2716, 3584
BsmAI GTCTC 9 cut(s) 164, 272, 1654, 1822, 2056, 2380, 2609, 2906, 3421
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 5 cut(s) 703, 1843, 1910, 3420, 3452
BsmI GAATGC 2 cut(s) 880, 2968
BsnI GGCC 8 cut(s) 168, 453, 634, 1437, 2027, 2720, 3278, 3362
Bso31I GGTCTC 2 cut(s) 272, 2056
BsoBI CYCGRG 3 cut(s) 720, 1428, 1454
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 6 cut(s) 133, 314, 480, 1006, 1507, 3532
Bsp19I CCATGG 1 cut(s) 2724
BspANI GGCC 8 cut(s) 168, 453, 634, 1437, 2027, 2720, 3278, 3362
BspDI ATCGAT 2 cut(s) 1636, 2193
BspFNI CGCG 1 cut(s) 936
BspHI TCATGA 2 cut(s) 1039, 2145
BspLI GGNNCC 2 cut(s) 757, 1291
BspMAI CTGCAG 3 cut(s) 2419, 2692, 3148
BspPI GGATC 3 cut(s) 944, 1087, 1718
BspQI GCTCTTC 2 cut(s) 809, 2313
BspT104I TTCGAA 1 cut(s) 674
BspT107I GGYRCC 1 cut(s) 1289
BspTI CTTAAG 1 cut(s) 2924
BspTNI GGTCTC 2 cut(s) 272, 2056
BsrDI GCAATG 2 cut(s) 183, 3057
BsrFI RCCGGY 1 cut(s) 3462
BssAI RCCGGY 1 cut(s) 3462
BssECI CCNNGG 4 cut(s) 869, 1297, 1593, 2724
BssNI GRCGYC 1 cut(s) 548
BssSI CACGAG 1 cut(s) 2038
BssT1I CCWWGG 3 cut(s) 869, 1297, 2724
Bst2BI CACGAG 1 cut(s) 2038
Bst2UI CCWGG 4 cut(s) 503, 1698, 2431, 3525
Bst4CI ACNGT 5 cut(s) 775, 848, 1223, 1490, 2809
Bst6I CTCTTC 7 cut(s) 275, 296, 809, 1657, 2208, 2313, 2451
BstACI GRCGYC 1 cut(s) 548
BstAFI CTTAAG 1 cut(s) 2924
BstBI TTCGAA 1 cut(s) 674
BstDSI CCRYGG 1 cut(s) 2724
BstF5I GGATG 5 cut(s) 423, 646, 1740, 2734, 3402
BstFNI CGCG 1 cut(s) 936
BstHHI GCGC 1 cut(s) 1954
BstMAI GTCTC 9 cut(s) 164, 272, 1654, 1822, 2056, 2380, 2609, 2906, 3421
BstMCI CGRYCG 1 cut(s) 635
BstNI CCWGG 4 cut(s) 503, 1698, 2431, 3525
BstNSI RCATGY 4 cut(s) 688, 1117, 1317, 2185
BstPAI GACNNNNGTC 1 cut(s) 1902
BstSCI CCNGG 5 cut(s) 501, 1592, 1696, 2429, 3523
BstSFI CTRYAG 6 cut(s) 1702, 2415, 2534, 2688, 3087, 3144
BstUI CGCG 1 cut(s) 936
BstV2I GAAGAC 1 cut(s) 244
BstX2I RGATCY 2 cut(s) 949, 1990
BstXI CCANNNNNNTGG 1 cut(s) 1268
BstYI RGATCY 2 cut(s) 949, 1990
BstZI CGGCCG 1 cut(s) 632
Bsu15I ATCGAT 2 cut(s) 1636, 2193
Bsu36I CCTNAGG 2 cut(s) 1241, 1369
BsuRI GGCC 8 cut(s) 168, 453, 634, 1437, 2027, 2720, 3278, 3362
BsuTUI ATCGAT 2 cut(s) 1636, 2193
BtgI CCRYGG 1 cut(s) 2724
BtrI CACGTC 1 cut(s) 3206
BtsCI GGATG 5 cut(s) 423, 646, 1740, 2734, 3402
BtsI GCAGTG 2 cut(s) 1098, 2424
CaiI CAGNNNCTG 4 cut(s) 2176, 2936, 3086, 3455
CciI TCATGA 2 cut(s) 1039, 2145
CfoI GCGC 1 cut(s) 1954
Cfr10I RCCGGY 1 cut(s) 3462
ClaI ATCGAT 2 cut(s) 1636, 2193
CseI GACGC 1 cut(s) 1614
Csp6I GTAC 5 cut(s) 776, 1290, 2713, 3193, 3350
CviQI GTAC 5 cut(s) 776, 1290, 2713, 3193, 3350
EaeI YGGCCR 3 cut(s) 166, 632, 2025
EagI CGGCCG 1 cut(s) 632
Eam1104I CTCTTC 7 cut(s) 275, 296, 809, 1657, 2208, 2313, 2451
EarI CTCTTC 7 cut(s) 275, 296, 809, 1657, 2208, 2313, 2451
EciI GGCGGA 1 cut(s) 2297
Ecl136II GAGCTC 2 cut(s) 312, 3530
EclXI CGGCCG 1 cut(s) 632
Eco130I CCWWGG 3 cut(s) 869, 1297, 2724
Eco147I AGGCCT 2 cut(s) 1437, 3362
Eco24I GRGCYC 3 cut(s) 314, 480, 3532
Eco31I GGTCTC 2 cut(s) 272, 2056
Eco52I CGGCCG 1 cut(s) 632
Eco53kI GAGCTC 2 cut(s) 312, 3530
Eco57I CTGAAG 5 cut(s) 2475, 2892, 3051, 3063, 3240
Eco81I CCTNAGG 2 cut(s) 1241, 1369
Eco88I CYCGRG 3 cut(s) 720, 1428, 1454
EcoICRI GAGCTC 2 cut(s) 312, 3530
EcoRI GAATTC 1 cut(s) 1089
EcoRII CCWGG 4 cut(s) 501, 1696, 2429, 3523
EcoT14I CCWWGG 3 cut(s) 869, 1297, 2724
EcoT22I ATGCAT 1 cut(s) 1621
EcoT38I GRGCYC 3 cut(s) 314, 480, 3532
ErhI CCWWGG 3 cut(s) 869, 1297, 2724
Esp3I CGTCTC 1 cut(s) 164
FalI AAGNNNNNCTT 6 cut(s) 2145, 2177, 3293, 3325, 3367, 3399
FaqI GGGAC 5 cut(s) 703, 1843, 1910, 3420, 3452
FauI CCCGC 2 cut(s) 365, 553
FauNDI CATATG 2 cut(s) 1884, 3537
FbaI TGATCA 4 cut(s) 1200, 1630, 2110, 2464
FokI GGATG 5 cut(s) 430, 653, 1747, 2741, 3409
FriOI GRGCYC 3 cut(s) 314, 480, 3532
FspBI CTAG 9 cut(s) 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366
GlaI GCGC 1 cut(s) 1953
GsuI CTGGAG 3 cut(s) 259, 3422, 3546
HaeIII GGCC 8 cut(s) 168, 453, 634, 1437, 2027, 2720, 3278, 3362
HapII CCGG 3 cut(s) 635, 1593, 3463
HgaI GACGC 1 cut(s) 1614
HhaI GCGC 1 cut(s) 1954
Hin1I GRCGYC 1 cut(s) 548
Hin6I GCGC 1 cut(s) 1952
HinP1I GCGC 1 cut(s) 1952
HincII GTYRAC 2 cut(s) 769, 1219
HindII GTYRAC 2 cut(s) 769, 1219
HindIII AAGCTT 2 cut(s) 2628, 2856
HpaI GTTAAC 2 cut(s) 769, 1219
HpaII CCGG 3 cut(s) 635, 1593, 3463
HphI GGTGA 5 cut(s) 125, 325, 1377, 1655, 2625
Hpy166II GTNNAC 5 cut(s) 769, 962, 1219, 1274, 1565
Hpy8I GTNNAC 5 cut(s) 769, 962, 1219, 1274, 1565
Hpy99I CGWCG 2 cut(s) 143, 611
HpyCH4III ACNGT 5 cut(s) 775, 848, 1223, 1490, 2809
HpyCH4IV ACGT 3 cut(s) 548, 894, 3205
HpySE526I ACGT 3 cut(s) 548, 894, 3205
Hsp92I GRCGYC 1 cut(s) 548
HspAI GCGC 1 cut(s) 1952
KpnI GGTACC 1 cut(s) 1293
Ksp22I TGATCA 4 cut(s) 1200, 1630, 2110, 2464
KspAI GTTAAC 2 cut(s) 769, 1219
LguI GCTCTTC 2 cut(s) 809, 2313
LmnI GCTCC 3 cut(s) 317, 1530, 3527
LweI GCATC 8 cut(s) 1354, 1960, 2506, 2876, 2923, 2929, 3387, 3461
MaeI CTAG 9 cut(s) 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366
MaeII ACGT 3 cut(s) 548, 894, 3205
MaeIII GTNAC 6 cut(s) 973, 1462, 1684, 2497, 2520, 2640
MflI RGATCY 2 cut(s) 949, 1990
MhlI GDGCHC 6 cut(s) 133, 314, 480, 1006, 1507, 3532
MlsI TGGCCA 1 cut(s) 2027
MluNI TGGCCA 1 cut(s) 2027
MlyI GAGTC 4 cut(s) 755, 926, 1865, 2615
MmeI TCCRAC 5 cut(s) 524, 783, 1688, 2832, 2973
Mox20I TGGCCA 1 cut(s) 2027
Mph1103I ATGCAT 1 cut(s) 1621
MroXI GAANNNNTTC 1 cut(s) 3545
MscI TGGCCA 1 cut(s) 2027
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 2027
MspA1I CMGCKG 1 cut(s) 3248
MspCI CTTAAG 1 cut(s) 2924
MspI CCGG 3 cut(s) 635, 1593, 3463
MspR9I CCNGG 5 cut(s) 503, 1594, 1698, 2431, 3525
Mva1269I GAATGC 2 cut(s) 880, 2968
MvaI CCWGG 4 cut(s) 503, 1698, 2431, 3525
MvnI CGCG 1 cut(s) 936
NciI CCSGG 1 cut(s) 1594
NcoI CCATGG 1 cut(s) 2724
NdeI CATATG 2 cut(s) 1884, 3537
NlaIV GGNNCC 2 cut(s) 757, 1291
NmeAIII GCCGAG 2 cut(s) 2258, 3511
NmuCI GTSAC 2 cut(s) 1684, 2497
NsiI ATGCAT 1 cut(s) 1621
NspI RCATGY 4 cut(s) 688, 1117, 1317, 2185
NspV TTCGAA 1 cut(s) 674
PaeI GCATGC 2 cut(s) 1317, 2185
PaeR7I CTCGAG 1 cut(s) 1454
PagI TCATGA 2 cut(s) 1039, 2145
PceI AGGCCT 2 cut(s) 1437, 3362
PciI ACATGT 2 cut(s) 684, 1113
PciSI GCTCTTC 2 cut(s) 809, 2313
PctI GAATGC 2 cut(s) 880, 2968
PdmI GAANNNNTTC 1 cut(s) 3545
PfeI GAWTC 8 cut(s) 377, 676, 712, 740, 1847, 2012, 2706, 3011
PflFI GACNNNGTC 1 cut(s) 1937
PflMI CCANNNNNTGG 1 cut(s) 2716
PfoI TCCNGGA 1 cut(s) 3523
PleI GAGTC 4 cut(s) 755, 925, 1864, 2615
PpsI GAGTC 4 cut(s) 755, 925, 1864, 2615
PscI ACATGT 2 cut(s) 684, 1113
PshAI GACNNNNGTC 1 cut(s) 1902
PshBI ATTAAT 1 cut(s) 1719
PsiI TTATAA 1 cut(s) 2735
Psp124BI GAGCTC 2 cut(s) 314, 3532
Psp6I CCWGG 4 cut(s) 501, 1696, 2429, 3523
PspGI CCWGG 4 cut(s) 501, 1696, 2429, 3523
PspN4I GGNNCC 2 cut(s) 757, 1291
PstI CTGCAG 3 cut(s) 2419, 2692, 3148
PstNI CAGNNNCTG 4 cut(s) 2176, 2936, 3086, 3455
PsuI RGATCY 2 cut(s) 949, 1990
PsyI GACNNNGTC 1 cut(s) 1937
PvuII CAGCTG 1 cut(s) 3248
RsaI GTAC 5 cut(s) 777, 1291, 2714, 3194, 3351
RsaNI GTAC 5 cut(s) 776, 1290, 2713, 3193, 3350
RseI CAYNNNNRTG 1 cut(s) 405
SacI GAGCTC 2 cut(s) 314, 3532
SapI GCTCTTC 2 cut(s) 809, 2313
ScaI AGTACT 1 cut(s) 3194
SchI GAGTC 4 cut(s) 755, 926, 1865, 2615
ScrFI CCNGG 5 cut(s) 503, 1594, 1698, 2431, 3525
SduI GDGCHC 6 cut(s) 133, 314, 480, 1006, 1507, 3532
SfaNI GCATC 8 cut(s) 1354, 1960, 2506, 2876, 2923, 2929, 3387, 3461
SfcI CTRYAG 6 cut(s) 1702, 2415, 2534, 2688, 3087, 3144
Sfr274I CTCGAG 1 cut(s) 1454
SfuI TTCGAA 1 cut(s) 674
SlaI CTCGAG 1 cut(s) 1454
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 9 cut(s) 29, 350, 479, 1005, 1454, 1823, 2186, 2924, 3002
SmoI CTYRAG 9 cut(s) 29, 350, 479, 1005, 1454, 1823, 2186, 2924, 3002
SphI GCATGC 2 cut(s) 1317, 2185
SseBI AGGCCT 2 cut(s) 1437, 3362
SspI AATATT 2 cut(s) 1353, 3294
SspMI CTAG 9 cut(s) 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366
SstI GAGCTC 2 cut(s) 314, 3532
StuI AGGCCT 2 cut(s) 1437, 3362
StyD4I CCNGG 5 cut(s) 501, 1592, 1696, 2429, 3523
StyI CCWWGG 3 cut(s) 869, 1297, 2724
TaaI ACNGT 5 cut(s) 775, 848, 1223, 1490, 2809
TaiI ACGT 3 cut(s) 551, 897, 3208
TaqII GACCGA 1 cut(s) 2080
TatI WGTACW 3 cut(s) 775, 2712, 3192
TauI GCSGC 4 cut(s) 634, 2249, 2672, 2945
TfiI GAWTC 8 cut(s) 377, 676, 712, 740, 1847, 2012, 2706, 3011
TseFI GTSAC 2 cut(s) 1684, 2497
Tsp45I GTSAC 2 cut(s) 1684, 2497
TspGWI ACGGA 4 cut(s) 182, 754, 1906, 2539
Tth111I GACNNNGTC 1 cut(s) 1937
Van91I CCANNNNNTGG 1 cut(s) 2716
Vha464I CTTAAG 1 cut(s) 2924
VspI ATTAAT 1 cut(s) 1719
XapI RAATTY 7 cut(s) 396, 837, 1089, 2363, 3038, 3420, 3478
XbaI TCTAGA 2 cut(s) 1532, 3365
XceI RCATGY 4 cut(s) 688, 1117, 1317, 2185
XcmI CCANNNNNNNNNTGG 1 cut(s) 2848
XhoI CTCGAG 1 cut(s) 1454
XmnI GAANNNNTTC 1 cut(s) 3545
XspI CTAG 9 cut(s) 1094, 1439, 1533, 1778, 2330, 2540, 2663, 3135, 3366
ZraI GACGTC 1 cut(s) 549
ZrmI AGTACT 1 cut(s) 3194
Zsp2I ATGCAT 1 cut(s) 1621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.