Rmu_sc0002916.1_g000002

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002916.1
OG0013921
Physical Location & Seq
Forward (+)
18426 .. 22126
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1776 bp
atgtccatctctgaggctgcagatgcggtgggggatatctctgttgattggagaggcagaccctgtctacaaggttttgagatgatggcaatagcagctgttgggaacaatctcatcacctatgtactaaatgagatgcactttccactgtcaaagtctgcaaacatagtgaccaactttatagggacagtcttcctcctctccctctttggagggttcctatcagattcttatcttgggagcttctggaccatgttaatctttgggtttgtggagctttctggttttatactactctctgttcaagcccatctcccccagttaaggccaccctcctgcaaggttatgtcgtccgagtactgtcaggaggcaaagggctacaaggctctcatattctttgctgcaatttacttggtggccttcggaagtggttgtctaaaaccaaacataatctctcatggagctgatcaattcaggaaggaggataccaagcaatccaagaagttatcaacttacttcaattgtgcatactttgccttctgcatgggagaactcattgcattaactgtccttgtttgggtccaaacacactccggcatggatgttggatttggagtctctgcagctgccatgacactaggactaattagcttggtgtttggtacgtctctgtatcggaacaaaccacctcgcggaagcattttcactccaattgctcaagttttcgttgctgcatttacgaagagaaagcaaatatgcccctcaaatacagaaatgcttcatggaaaccaaaacaatgtgccaaaccacctctttgtcaccatgtcgcctaacgtcaccactctcctccacactgaaaagttcagattcctagacaaggcatgcatcaaaacagaagatggaactgagaggaccgaaagtccatggagattatgcaccgtgtctcaggtggagcaagtcaaaataattatctcagttgtgcccatttttgcatgtaccatcatcttcaacacaattttggctcaactccaaacattttcagtccaacaaggaagtacaatgaacgcaaggatcaccgaaagcttcaaaatccccccagcttcactccaagccatcccttacatcatgctaatctttcttgtccctctctacgaaaccgtctttgtaccgactgctcgaaaagtcaccggaagggactctgggatttctcctttacaaagagttggcactggcctttttattgccaccttttcaatggtttcagctgcagttattgagagaaagagaagaaactcggccttgcacaatgaagctctttcaatcttttggattgctccacagtttctcatcttcggcctgtcagagatgttcactgcagtagggcttatagagttcttctacaagcagtcattggaaggaatgcaatcatttctaactgccatgacatactgctcatactcatttggcttctatttgagctcactccttgtttctcttgtgaacaaagttacctcaacttcttcaaggggagggtggctcagtgacaatgatctcaacaaggataggctggaccgtttctattggctgctggctgctctcagtcttatgaacttcttcaattatctcttctggtcaaattggtattgttacaaccccactctatcacccactaatactaattcaccccgagaagatggaaaagacctggaaaacagcagcaacttcaagtacccttcaaggcatattgaaggttctcataatattattataacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

591

Amino Acids

65.98

Weight (kDa)

8.6

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 82 - 512 9.6e-92 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013921)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33440
fragaria_vesca FvH4_2g00200
malus_domestica MD05G1000900.v1.1
prunus_persica Prupe.8G001900_v2.0.a1 Prupe.8G001900_v2.0.a1
pyrus_communis pycom05g00010
rosa_chinensis RchiOBHm_Chr6g0249481
rosa_laevigata RLG00000015577
rosa_multiflora Rmu_sc0002916.1_g000002
rosa_roxburghii Rroxscaffold_7G00217660
rosa_rugosa Rorug05G0492600 Rorug05G0492700
rosa_samantha Rh6AG002400 Rh6BG007700 Rh6CG001600 Rh6DG001600
rosa_wichuraiana Rw6G000300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1769
AccI GTMKAC 1 cut(s) 67
AccII CGCG 1 cut(s) 693
AciI CCGC 2 cut(s) 26, 693
AclWI GGATC 1 cut(s) 1079
AfaI GTAC 7 cut(s) 126, 359, 664, 997, 1057, 1167, 1730
AfiI CCNNNNNNNGG 4 cut(s) 324, 577, 692, 877
AhdI GACNNNNNGTC 1 cut(s) 918
AjnI CCWGG 1 cut(s) 1704
Alw21I GWGCWC 1 cut(s) 1481
Alw26I GTCTC 3 cut(s) 622, 672, 948
AlwI GGATC 1 cut(s) 1079
AlwNI CAGNNNCTG 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 1686
AoxI GGCC 5 cut(s) 326, 417, 1231, 1296, 1354
Asp700I GAANNNNTTC 2 cut(s) 777, 1613
AspS9I GGNCC 4 cut(s) 249, 580, 912, 1570
AsuHPI GGTGA 7 cut(s) 109, 811, 829, 1066, 1177, 1656, 1674
AvaI CYCGRG 1 cut(s) 1686
AvaII GGWCC 4 cut(s) 249, 580, 912, 1570
BaeGI GKGCMC 1 cut(s) 984
BanII GRGCYC 1 cut(s) 1481
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 1481
BccI CCATC 7 cut(s) 14, 79, 318, 893, 1007, 1121, 1688
BciT130I CCWGG 1 cut(s) 1706
BciVI GTATCC 1 cut(s) 478
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 3 cut(s) 622, 672, 948
BfaI CTAG 2 cut(s) 638, 872
BfmI CTRYAG 4 cut(s) 18, 621, 1266, 1374
BfuI GTATCC 1 cut(s) 478
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 1706
Bme18I GGWCC 4 cut(s) 249, 580, 912, 1570
BmeRI GACNNNNNGTC 1 cut(s) 918
BmeT110I CYCGRG 1 cut(s) 1686
BmgT120I GGNCC 4 cut(s) 249, 580, 912, 1570
BmiI GGNNCC 2 cut(s) 218, 581
BmrFI CCNGG 1 cut(s) 1706
BmrI ACTGGG 1 cut(s) 313
BmsI GCATC 3 cut(s) 13, 126, 894
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 184
BplI GAGNNNNNCTC 2 cut(s) 1521, 1553
BpuEI CTTGAG 1 cut(s) 702
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 923
BsaWI WCCGGW 1 cut(s) 1187
Bsc4I CCNNNNNNNGG 4 cut(s) 324, 577, 692, 877
Bse1I ACTGG 2 cut(s) 319, 1234
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 1706
BseDI CCNNGG 1 cut(s) 923
BseGI GGATG 2 cut(s) 607, 1113
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 4 cut(s) 324, 577, 692, 877
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 5 cut(s) 897, 959, 987, 1552, 1612
BseNI ACTGG 2 cut(s) 319, 1234
BseRI GAGGAG 2 cut(s) 188, 836
BseSI GKGCMC 1 cut(s) 984
BseYI CCCAGC 1 cut(s) 1096
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 5 cut(s) 328, 419, 1233, 1298, 1356
BsiHKAI GWGCWC 1 cut(s) 1481
BsiHKCI CYCGRG 1 cut(s) 1686
BsiSI CCGG 2 cut(s) 594, 1188
BslFI GGGAC 3 cut(s) 199, 1127, 1208
BslI CCNNNNNNNGG 4 cut(s) 324, 577, 692, 877
BsmAI GTCTC 3 cut(s) 622, 672, 948
BsmBI CGTCTC 1 cut(s) 672
BsmFI GGGAC 3 cut(s) 199, 1127, 1208
BsmI GAATGC 1 cut(s) 1425
BsnI GGCC 5 cut(s) 328, 419, 1233, 1298, 1356
BsoBI CYCGRG 1 cut(s) 1686
Bsp1286I GDGCHC 2 cut(s) 984, 1481
Bsp143I GATC 3 cut(s) 466, 1071, 1549
Bsp19I CCATGG 1 cut(s) 923
BspACI CCGC 2 cut(s) 26, 693
BspANI GGCC 5 cut(s) 328, 419, 1233, 1298, 1356
BspCNI CTCAG 6 cut(s) 4, 898, 958, 986, 1551, 1611
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 218, 581
BspMAI CTGCAG 4 cut(s) 22, 625, 1270, 1378
BspPI GGATC 1 cut(s) 1079
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 2 cut(s) 319, 1234
BssECI CCNNGG 1 cut(s) 923
BssMI GATC 3 cut(s) 466, 1071, 1549
BssT1I CCWWGG 1 cut(s) 923
Bst2UI CCWGG 1 cut(s) 1706
Bst4CI ACNGT 8 cut(s) 150, 190, 362, 568, 940, 1159, 1341, 1574
Bst6I CTCTTC 2 cut(s) 737, 1631
BstAPI GCANNNNNTGC 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 883, 1590
BstDEI CTNAG 6 cut(s) 12, 906, 945, 973, 1538, 1598
BstDSI CCRYGG 1 cut(s) 923
BstENI CCTNNNNNAGG 1 cut(s) 875
BstF5I GGATG 2 cut(s) 607, 1113
BstFNI CGCG 1 cut(s) 693
BstKTI GATC 3 cut(s) 469, 1074, 1552
BstMAI GTCTC 3 cut(s) 622, 672, 948
BstMBI GATC 3 cut(s) 466, 1071, 1549
BstMWI GCNNNNNNNGC 3 cut(s) 23, 95, 533
BstNI CCWGG 1 cut(s) 1706
BstNSI RCATGY 2 cut(s) 885, 996
BstSCI CCNGG 1 cut(s) 1704
BstSFI CTRYAG 4 cut(s) 18, 621, 1266, 1374
BstSLI GKGCMC 1 cut(s) 984
BstUI CGCG 1 cut(s) 693
BstV2I GAAGAC 1 cut(s) 184
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 5 cut(s) 328, 419, 1233, 1298, 1356
BtgI CCRYGG 1 cut(s) 923
BtsCI GGATG 2 cut(s) 607, 1113
BtsI GCAGTG 1 cut(s) 1371
BtsIMutI CAGTG 5 cut(s) 146, 852, 1227, 1371, 1546
Cac8I GCNNGC 2 cut(s) 883, 1590
CaiI CAGNNNCTG 1 cut(s) 63
Cfr13I GGNCC 4 cut(s) 249, 580, 912, 1570
Csp6I GTAC 7 cut(s) 125, 358, 663, 996, 1056, 1166, 1729
CviQI GTAC 7 cut(s) 125, 358, 663, 996, 1056, 1166, 1729
DdeI CTNAG 6 cut(s) 12, 906, 945, 973, 1538, 1598
DpnI GATC 3 cut(s) 468, 1073, 1551
DpnII GATC 3 cut(s) 466, 1071, 1549
DriI GACNNNNNGTC 1 cut(s) 918
Eam1104I CTCTTC 2 cut(s) 737, 1631
Eam1105I GACNNNNNGTC 1 cut(s) 918
EarI CTCTTC 2 cut(s) 737, 1631
Ecl136II GAGCTC 1 cut(s) 1479
Eco130I CCWWGG 1 cut(s) 923
Eco24I GRGCYC 1 cut(s) 1481
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 4 cut(s) 249, 580, 912, 1570
Eco53kI GAGCTC 1 cut(s) 1479
Eco88I CYCGRG 1 cut(s) 1686
EcoICRI GAGCTC 1 cut(s) 1479
EcoNI CCTNNNNNAGG 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 1704
EcoRV GATATC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 923
EcoT22I ATGCAT 1 cut(s) 887
EcoT38I GRGCYC 1 cut(s) 1481
ErhI CCWWGG 1 cut(s) 923
Esp3I CGTCTC 1 cut(s) 672
FaqI GGGAC 3 cut(s) 199, 1127, 1208
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 67
FokI GGATG 2 cut(s) 614, 1100
FriOI GRGCYC 1 cut(s) 1481
FspBI CTAG 2 cut(s) 638, 872
GsaI CCCAGC 1 cut(s) 1100
HaeIII GGCC 5 cut(s) 328, 419, 1233, 1298, 1356
HapII CCGG 2 cut(s) 594, 1188
HindIII AAGCTT 1 cut(s) 1081
HinfI GANTC 4 cut(s) 227, 615, 867, 1196
HpaII CCGG 2 cut(s) 594, 1188
HphI GGTGA 7 cut(s) 109, 811, 829, 1066, 1177, 1656, 1674
Hpy166II GTNNAC 3 cut(s) 68, 1371, 1501
Hpy188I TCNGA 7 cut(s) 13, 226, 355, 425, 678, 866, 1363
Hpy188III TCNNGA 3 cut(s) 247, 365, 475
Hpy8I GTNNAC 3 cut(s) 68, 1371, 1501
HpyAV CCTTC 7 cut(s) 430, 472, 547, 1185, 1409, 1742, 1743
HpyCH4III ACNGT 8 cut(s) 150, 190, 362, 568, 940, 1159, 1341, 1574
HpyCH4IV ACGT 2 cut(s) 665, 834
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 95, 533
HpyF3I CTNAG 6 cut(s) 12, 906, 945, 973, 1538, 1598
HpySE526I ACGT 2 cut(s) 665, 834
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 3 cut(s) 466, 1071, 1549
LmnI GCTCC 5 cut(s) 240, 274, 461, 952, 1339
LweI GCATC 3 cut(s) 13, 126, 894
MaeI CTAG 2 cut(s) 638, 872
MaeII ACGT 2 cut(s) 665, 834
MaeIII GTNAC 7 cut(s) 169, 817, 835, 1183, 1507, 1541, 1646
MalI GATC 3 cut(s) 468, 1073, 1551
MboI GATC 3 cut(s) 466, 1071, 1549
MfeI CAATTG 2 cut(s) 520, 711
MhlI GDGCHC 2 cut(s) 984, 1481
MlyI GAGTC 2 cut(s) 624, 1190
MmeI TCCRAC 2 cut(s) 586, 1069
Mph1103I ATGCAT 1 cut(s) 887
MroXI GAANNNNTTC 2 cut(s) 777, 1613
MseI TTAA 3 cut(s) 257, 323, 563
MspA1I CMGCKG 3 cut(s) 98, 626, 1265
MspI CCGG 2 cut(s) 594, 1188
MspR9I CCNGG 1 cut(s) 1706
MunI CAATTG 2 cut(s) 520, 711
Mva1269I GAATGC 1 cut(s) 1425
MvaI CCWGG 1 cut(s) 1706
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 3 cut(s) 23, 95, 533
NcoI CCATGG 1 cut(s) 923
NdeII GATC 3 cut(s) 466, 1071, 1549
NlaIV GGNNCC 2 cut(s) 218, 581
NmeAIII GCCGAG 1 cut(s) 1274
NmuCI GTSAC 5 cut(s) 169, 817, 835, 1183, 1541
NsiI ATGCAT 1 cut(s) 887
NspI RCATGY 2 cut(s) 885, 996
PaeI GCATGC 1 cut(s) 885
PctI GAATGC 1 cut(s) 1425
PdmI GAANNNNTTC 2 cut(s) 777, 1613
PfeI GAWTC 2 cut(s) 227, 867
PflFI GACNNNGTC 1 cut(s) 63
PleI GAGTC 2 cut(s) 623, 1190
PpsI GAGTC 2 cut(s) 623, 1190
PsiI TTATAA 1 cut(s) 1769
Psp124BI GAGCTC 1 cut(s) 1481
Psp6I CCWGG 1 cut(s) 1704
PspFI CCCAGC 1 cut(s) 1096
PspGI CCWGG 1 cut(s) 1704
PspN4I GGNNCC 2 cut(s) 218, 581
PspPI GGNCC 4 cut(s) 249, 580, 912, 1570
PstI CTGCAG 4 cut(s) 22, 625, 1270, 1378
PstNI CAGNNNCTG 1 cut(s) 63
PsyI GACNNNGTC 1 cut(s) 63
PvuII CAGCTG 3 cut(s) 98, 626, 1265
RsaI GTAC 7 cut(s) 126, 359, 664, 997, 1057, 1167, 1730
RsaNI GTAC 7 cut(s) 125, 358, 663, 996, 1056, 1166, 1729
SacI GAGCTC 1 cut(s) 1481
SaqAI TTAA 3 cut(s) 257, 323, 563
Sau3AI GATC 3 cut(s) 466, 1071, 1549
Sau96I GGNCC 4 cut(s) 249, 580, 912, 1570
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 2 cut(s) 624, 1190
ScrFI CCNGG 1 cut(s) 1706
SduI GDGCHC 2 cut(s) 984, 1481
SfaNI GCATC 3 cut(s) 13, 126, 894
SfcI CTRYAG 4 cut(s) 18, 621, 1266, 1374
SinI GGWCC 4 cut(s) 249, 580, 912, 1570
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
SphI GCATGC 1 cut(s) 885
SsiI CCGC 2 cut(s) 26, 693
SspI AATATT 1 cut(s) 1762
SspMI CTAG 2 cut(s) 638, 872
SstI GAGCTC 1 cut(s) 1481
StyD4I CCNGG 1 cut(s) 1704
StyI CCWWGG 1 cut(s) 923
TaaI ACNGT 8 cut(s) 150, 190, 362, 568, 940, 1159, 1341, 1574
TaiI ACGT 2 cut(s) 668, 837
TaqI TCGA 1 cut(s) 1177
TaqII GACCGA 1 cut(s) 929
TatI WGTACW 3 cut(s) 124, 357, 1055
TfiI GAWTC 2 cut(s) 227, 867
Tru1I TTAA 3 cut(s) 257, 323, 563
Tru9I TTAA 3 cut(s) 257, 323, 563
TscAI CASTG 5 cut(s) 153, 859, 1234, 1378, 1546
TseFI GTSAC 5 cut(s) 169, 817, 835, 1183, 1541
Tsp45I GTSAC 5 cut(s) 169, 817, 835, 1183, 1541
TspDTI ATGAA 4 cut(s) 770, 1076, 1323, 1622
TspRI CASTG 5 cut(s) 153, 859, 1234, 1378, 1546
Tth111I GACNNNGTC 1 cut(s) 63
VpaK11BI GGWCC 4 cut(s) 249, 580, 912, 1570
XagI CCTNNNNNAGG 1 cut(s) 875
XceI RCATGY 2 cut(s) 885, 996
XcmI CCANNNNNNNNNTGG 1 cut(s) 1252
XmiI GTMKAC 1 cut(s) 67
XmnI GAANNNNTTC 2 cut(s) 777, 1613
XspI CTAG 2 cut(s) 638, 872
ZrmI AGTACT 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.