Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003129.1

Orthogroup ID

OG0010233

Physical Location & Seq

Genomic Coordinates Reverse (-)

102477 .. 107871

Gene Structure 5395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggagaaccacaacgcgaaattggtccctaacggtggactcaaacctaaccccagcaacaaccttagcgaacaagaacaagaagagaaccctactcttaatcgatgcggagaagaagaagaagaagaagaagaagtaactacgcaattggcggagcctccttcacctaatgccccgcagtcctcaagaactcccttcactaatctcagtcaggtcgatgctgaccttgctcttgctcgaactctccaagaacaggaaagggcatacatgatgctgcggatgaacaatgaagggagtgattatggcagttgggaagctggaagttatgtgcatgatgatgaggatgattttcatgatgatactgacggaaatgatgatgaggagcaatatgatgggactgatgctgacaatgatgaagaagatgcatttgatgtgcacgctcatgatgatgctggagacgatcataaccccagtgtcgtatatgaccctgctgttttttcaagtgatgaggcgtatgcaagagccctgcaggatgctgaagatagagatatggcagctagactgatggcccttgcaattgatgaccgtgaagctgaggacactgaggatcagggaggtaactctcaggatgcatgggaggaggttgacccagatgagctttcgtatgaggagttacttgcattgggtgaagttgttggaacagagagcagagggctttctgctgatacaattgcttcgttgccttcagtaagctacaagatggggagcgatcagaatggaagcaatgagtcgtgtgtcatttgccggttagattatgaggatggtgaaaacttgacagtactttcttgcaaacactcttatcattctgattgcataaataattggttgacaataaacaaggtctgcccagtttgcagtgctgaagtctccacatctggaaacagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0051865 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

315

Amino Acids

34.68

Weight (kDa)

4.05

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	260 - 305	1.1e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	264 - 305	5.1e-13	Ring finger domain
zf-C3HC4_2	PF13923	265 - 305	3.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	265 - 292	4.3e-08	RING-like zinc finger
zf-C3HC4	PF00097	265 - 305	5.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	265 - 306	1.8e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19910 AT3G19910
fragaria_vesca	FvH4_1g00010
malus_domestica	MD00G1145000.v1.1 MD15G1141500.v1.1
prunus_persica	Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1 Prupe.7G271700_v2.0.a1
pyrus_communis	pycom15g12780 pycom290g00050
rosa_chinensis	RchiOBHm_Chr2g0084221
rosa_laevigata	RLG00000015601
rosa_multiflora	Rmu_sc0003129.1_g000024
rosa_roxburghii	Rroxscaffold_2G00156230
rosa_rugosa	Rorug01G0451900 Rorug01G0451900
rosa_samantha	Rh2AG000200 Rh2BG000100 Rh2CG000100 Rh2DG000200
rosa_wichuraiana	Rw2G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	108, 152, 176, 277
AclWI	GGATC	1 cut(s)	615
AcuI	CTGAAG	3 cut(s)	558, 729, 942
AfaI	GTAC	1 cut(s)	840
AfiI	CCNNNNNNNGG	2 cut(s)	35, 253
AgsI	TTSAA	1 cut(s)	501
AluBI	AGCT	6 cut(s)	317, 557, 593, 658, 753, 945
AluI	AGCT	6 cut(s)	317, 557, 593, 658, 753, 945
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	2 cut(s)	450, 931
Alw44I	GTGCAC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	1 cut(s)	567
ApaLI	GTGCAC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	274, 554
AspS9I	GGNCC	2 cut(s)	25, 568
AsuHPI	GGTGA	3 cut(s)	156, 698, 836
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	438
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	261, 566
BccI	CCATC	4 cut(s)	386, 559, 754, 815
BcoDI	GTCTC	2 cut(s)	450, 931
BfaI	CTAG	2 cut(s)	558, 946
BfmI	CTRYAG	1 cut(s)	527
BisI	GCNGC	2 cut(s)	275, 555
BlsI	GCNGC	2 cut(s)	276, 556
BmcAI	AGTACT	1 cut(s)	840
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 568
BmiI	GGNNCC	2 cut(s)	27, 156
BmrI	ACTGGG	2 cut(s)	465, 902
BmsI	GCATC	8 cut(s)	95, 208, 261, 391, 412, 439, 523, 619
BmuI	ACTGGG	2 cut(s)	465, 902
BpmI	CTGGAG	1 cut(s)	474
Bpu10I	CCTNAGC	2 cut(s)	65, 594
BpuEI	CTTGAG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 253
Bse118I	RCCGGY	1 cut(s)	804
Bse1I	ACTGG	2 cut(s)	471, 908
Bse3DI	GCAATG	1 cut(s)	790
BseCI	ATCGAT	1 cut(s)	103
BseGI	GGATG	5 cut(s)	285, 349, 538, 634, 826
BseLI	CCNNNNNNNGG	2 cut(s)	35, 253
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	4 cut(s)	220, 585, 594, 638
BseNI	ACTGG	2 cut(s)	471, 908
BseRI	GAGGAG	3 cut(s)	395, 653, 683
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	261, 566
BseYI	CCCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	569
BshVI	ATCGAT	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	805
BslFI	GGGAC	2 cut(s)	11, 409
BslI	CCNNNNNNNGG	2 cut(s)	35, 253
BsmAI	GTCTC	2 cut(s)	450, 931
BsmBI	CGTCTC	1 cut(s)	450
BsmFI	GGGAC	2 cut(s)	11, 409
BsnI	GGCC	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	438, 526
Bsp143I	GATC	3 cut(s)	460, 607, 769
BspACI	CCGC	4 cut(s)	108, 152, 176, 277
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	4 cut(s)	219, 586, 595, 637
BspDI	ATCGAT	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	2 cut(s)	352, 442
BspLI	GGNNCC	2 cut(s)	27, 156
BspMAI	CTGCAG	1 cut(s)	531
BspPI	GGATC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	790
BsrFI	RCCGGY	1 cut(s)	804
BsrI	ACTGG	2 cut(s)	471, 908
BssAI	RCCGGY	1 cut(s)	804
BssMI	GATC	3 cut(s)	460, 607, 769
Bst4CI	ACNGT	3 cut(s)	35, 587, 838
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	5 cut(s)	65, 206, 594, 603, 624
BstF5I	GGATG	5 cut(s)	285, 349, 538, 634, 826
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	463, 610, 772
BstMAI	GTCTC	2 cut(s)	450, 931
BstMBI	GATC	3 cut(s)	460, 607, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 912
BstSFI	CTRYAG	1 cut(s)	527
BstSLI	GKGCMC	1 cut(s)	438
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	261, 566
Bsu15I	ATCGAT	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	569
BsuTUI	ATCGAT	1 cut(s)	103
BtsCI	GGATG	5 cut(s)	285, 349, 538, 634, 826
BtsI	GCAGTG	1 cut(s)	922
BtsIMutI	CAGTG	3 cut(s)	478, 600, 922
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	2 cut(s)	352, 442
Cfr10I	RCCGGY	1 cut(s)	804
Cfr13I	GGNCC	2 cut(s)	25, 568
ClaI	ATCGAT	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	839
CviAII	CATG	5 cut(s)	268, 332, 353, 443, 633
CviQI	GTAC	1 cut(s)	839
DdeI	CTNAG	5 cut(s)	65, 206, 594, 603, 624
DpnI	GATC	3 cut(s)	462, 609, 771
DpnII	GATC	3 cut(s)	460, 607, 769
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	558, 729, 942
EcoT22I	ATGCAT	2 cut(s)	427, 634
EcoT38I	GRGCYC	1 cut(s)	526
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	5 cut(s)	271, 335, 356, 446, 636
FaqI	GGGAC	2 cut(s)	11, 409
FatI	CATG	5 cut(s)	267, 331, 352, 442, 632
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	275, 555
FokI	GGATG	5 cut(s)	292, 356, 545, 641, 833
FriOI	GRGCYC	1 cut(s)	526
Fsp4HI	GCNGC	2 cut(s)	275, 555
FspBI	CTAG	2 cut(s)	558, 946
GluI	GCNGC	2 cut(s)	275, 555
GsaI	CCCAGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	1 cut(s)	805
Hin1II	CATG	5 cut(s)	271, 335, 356, 446, 636
HincII	GTYRAC	2 cut(s)	646, 888
HindII	GTYRAC	2 cut(s)	646, 888
HinfI	GANTC	2 cut(s)	39, 788
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	3 cut(s)	156, 698, 836
Hpy166II	GTNNAC	4 cut(s)	38, 436, 646, 888
Hpy188I	TCNGA	2 cut(s)	774, 868
Hpy188III	TCNNGA	5 cut(s)	186, 353, 443, 626, 936
Hpy8I	GTNNAC	4 cut(s)	38, 436, 646, 888
HpyAV	CCTTC	4 cut(s)	171, 205, 284, 753
HpyCH4III	ACNGT	3 cut(s)	35, 587, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 912
HpyF3I	CTNAG	5 cut(s)	65, 206, 594, 603, 624
Hsp92II	CATG	5 cut(s)	271, 335, 356, 446, 636
Kzo9I	GATC	3 cut(s)	460, 607, 769
LmnI	GCTCC	3 cut(s)	154, 382, 765
Lsp1109I	GCAGC	2 cut(s)	261, 566
LweI	GCATC	8 cut(s)	95, 208, 261, 391, 412, 439, 523, 619
MaeI	CTAG	2 cut(s)	558, 946
MaeIII	GTNAC	3 cut(s)	136, 617, 672
MalI	GATC	3 cut(s)	462, 609, 771
MboI	GATC	3 cut(s)	460, 607, 769
MfeI	CAATTG	3 cut(s)	146, 576, 729
MhlI	GDGCHC	2 cut(s)	438, 526
MluCI	AATT	5 cut(s)	20, 146, 576, 729, 880
MlyI	GAGTC	2 cut(s)	33, 797
MmeI	TCCRAC	1 cut(s)	676
Mph1103I	ATGCAT	2 cut(s)	427, 634
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	3 cut(s)	336, 441, 447
MspI	CCGG	1 cut(s)	805
MunI	CAATTG	3 cut(s)	146, 576, 729
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	227, 912
NdeII	GATC	3 cut(s)	460, 607, 769
NlaIII	CATG	5 cut(s)	271, 335, 356, 446, 636
NlaIV	GGNNCC	2 cut(s)	27, 156
NsiI	ATGCAT	2 cut(s)	427, 634
PagI	TCATGA	2 cut(s)	352, 442
PkrI	GCNGC	2 cut(s)	276, 556
PleI	GAGTC	2 cut(s)	33, 796
PpsI	GAGTC	2 cut(s)	33, 796
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	27, 156
PspPI	GGNCC	2 cut(s)	25, 568
PstI	CTGCAG	1 cut(s)	531
RsaI	GTAC	1 cut(s)	840
RsaNI	GTAC	1 cut(s)	839
RseI	CAYNNNNRTG	3 cut(s)	336, 441, 447
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	275, 555
Sau3AI	GATC	3 cut(s)	460, 607, 769
Sau96I	GGNCC	2 cut(s)	25, 568
SbfI	CCTGCAGG	1 cut(s)	531
ScaI	AGTACT	1 cut(s)	840
SchI	GAGTC	2 cut(s)	33, 797
SdaI	CCTGCAGG	1 cut(s)	531
SduI	GDGCHC	2 cut(s)	438, 526
SfaNI	GCATC	8 cut(s)	95, 208, 261, 391, 412, 439, 523, 619
SfcI	CTRYAG	1 cut(s)	527
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	336, 441, 447
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse8387I	CCTGCAGG	1 cut(s)	531
Sse9I	AATT	5 cut(s)	20, 146, 576, 729, 880
SsiI	CCGC	4 cut(s)	108, 152, 176, 277
SspMI	CTAG	2 cut(s)	558, 946
TaaI	ACNGT	3 cut(s)	35, 587, 838
TaqI	TCGA	3 cut(s)	103, 216, 238
TasI	AATT	5 cut(s)	20, 146, 576, 729, 880
TatI	WGTACW	1 cut(s)	838
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	3 cut(s)	478, 607, 922
TseI	GCWGC	2 cut(s)	274, 554
TspDTI	ATGAA	4 cut(s)	296, 303, 341, 429
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	3 cut(s)	478, 607, 922
VneI	GTGCAC	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	2 cut(s)	558, 946
ZrmI	AGTACT	1 cut(s)	840
Zsp2I	ATGCAT	2 cut(s)	427, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.