Rmu_sc0003166.1_g000009

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003166.1
OG0013370
Physical Location & Seq
Reverse (-)
35972 .. 36661
690 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
atggcttccttctctcccttcctcctgatctccctctcggctctgctaatattgccctctcagtcagccgactgcccctccgccaagttcaagaacaagtccttcagcaactgcaccgccctctcctccctcagctcctacctccactatacctacaacccctccaactcctccctcgccgtcgccttcatcgccacacctcccaagtccggcggctggatcgcctgggccatcaaccccaacagcaccaaaatgcccggcgctcaagccatagtcgcctacaccaaagaagacggcacccccatgatcaaaaccctcaacatcaaatcctacatcgaactgattcccggaaagctggccttcgacgtctgggacaccagcgccgagctcaccaacggaaccttaacgctcttcgccaccgtcaaggttccggagaaggcagagacgctgaaccaggtctggcaggtgggccctcgaggaaaccagaccaacggctatatcatgaagcacgaaatgggcaaggaaaatctagccgcgtacggtcccttgagtttggccggcaccgccagtaccaacaccacaaacaccactagtggtaagagtggagcgcccttgaggattggtgatggaggacacgtgggtttgttctctattttgctcttggtccttgggactcttcttgttttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF568

Protein Analysis

229

Amino Acids

24.27

Weight (kDa)

9.02

Isoelectric Point (pI)

25.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 85 - 184 8.5e-24 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
AatII GACGTC 1 cut(s) 369
AbsI CCTCGAGG 1 cut(s) 474
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 2 cut(s) 296, 560
AccII CGCG 1 cut(s) 536
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 5 cut(s) 81, 117, 213, 534, 564
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 555
AcuI CTGAAG 1 cut(s) 88
AcvI CACGTG 1 cut(s) 637
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 2 cut(s) 539, 571
AfiI CCNNNNNNNGG 2 cut(s) 209, 216
AflIII ACRYGT 1 cut(s) 634
AgsI TTSAA 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 590
AjnI CCWGG 2 cut(s) 224, 453
AluBI AGCT 3 cut(s) 135, 355, 388
AluI AGCT 3 cut(s) 135, 355, 388
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 474
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 4 cut(s) 228, 357, 469, 555
ApaI GGGCCC 1 cut(s) 473
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 3 cut(s) 263, 383, 610
AspS9I GGNCC 5 cut(s) 228, 469, 470, 542, 664
AsuC2I CCSGG 2 cut(s) 258, 348
AsuHPI GGTGA 2 cut(s) 382, 635
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 2 cut(s) 542, 664
BaeGI GKGCMC 1 cut(s) 473
BanI GGYRCC 2 cut(s) 296, 560
BanII GRGCYC 2 cut(s) 390, 473
BbrPI CACGTG 1 cut(s) 637
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 131
BccI CCATC 2 cut(s) 239, 620
BceAI ACGGC 3 cut(s) 164, 310, 508
BciT130I CCWGG 2 cut(s) 226, 455
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 2 cut(s) 258, 348
BcoDI GTCTC 1 cut(s) 437
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 3 cut(s) 530, 591, 688
BfoI RGCGCY 3 cut(s) 264, 384, 611
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 2 cut(s) 214, 534
BlsI GCNGC 2 cut(s) 215, 535
Bme1390I CCNGG 4 cut(s) 226, 258, 348, 455
Bme18I GGWCC 2 cut(s) 542, 664
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 5 cut(s) 228, 469, 470, 542, 664
BmiI GGNNCC 6 cut(s) 298, 400, 429, 471, 544, 562
BmrFI CCNGG 4 cut(s) 226, 258, 348, 455
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 3 cut(s) 249, 568, 634
BpuMI CCSGG 2 cut(s) 258, 348
BsaAI YACGTR 1 cut(s) 637
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 225, 667
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 146, 176, 621, 651
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 216
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 1 cut(s) 567
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 2 cut(s) 226, 455
BseDI CCNNGG 2 cut(s) 225, 667
BseLI CCNNNNNNNGG 2 cut(s) 209, 216
BseMII CTCAG 2 cut(s) 74, 145
BseNI ACTGG 1 cut(s) 567
BseRI GAGGAG 2 cut(s) 115, 160
BseSI GKGCMC 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 536
BshFI GGCC 4 cut(s) 230, 359, 471, 557
BshNI GGYRCC 2 cut(s) 296, 560
BsiHKAI GWGCWC 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 5 cut(s) 210, 258, 348, 431, 558
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 3 cut(s) 386, 528, 685
BslI CCNNNNNNNGG 2 cut(s) 209, 216
BsmAI GTCTC 1 cut(s) 437
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 3 cut(s) 386, 528, 685
BsnI GGCC 4 cut(s) 230, 359, 471, 557
BsoBI CYCGRG 1 cut(s) 474
Bsp120I GGGCCC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 390, 473
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 27, 219, 306
BspACI CCGC 5 cut(s) 81, 117, 213, 534, 564
BspANI GGCC 4 cut(s) 230, 359, 471, 557
BspCNI CTCAG 2 cut(s) 73, 144
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 1 cut(s) 536
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 6 cut(s) 298, 400, 429, 471, 544, 562
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 2 cut(s) 296, 560
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 1 cut(s) 567
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 225, 667
BssMI GATC 3 cut(s) 27, 219, 306
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 667
Bst2UI CCWGG 2 cut(s) 226, 455
Bst4CI ACNGT 2 cut(s) 421, 542
Bst6I CTCTTC 2 cut(s) 416, 681
BstACI GRCGYC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 357, 559
BstDEI CTNAG 2 cut(s) 60, 131
BstFNI CGCG 1 cut(s) 536
BstH2I RGCGCY 3 cut(s) 264, 384, 611
BstHHI GCGC 3 cut(s) 263, 383, 610
BstKTI GATC 3 cut(s) 30, 222, 309
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 3 cut(s) 27, 219, 306
BstMWI GCNNNNNNNGC 4 cut(s) 52, 191, 275, 563
BstNI CCWGG 2 cut(s) 226, 455
BstSCI CCNGG 4 cut(s) 224, 256, 346, 453
BstSLI GKGCMC 1 cut(s) 473
BstUI CGCG 1 cut(s) 536
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 4 cut(s) 230, 359, 471, 557
BtgZI GCGATG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 357, 559
CaiI CAGNNNCTG 1 cut(s) 111
CciI TCATGA 1 cut(s) 501
CfoI GCGC 3 cut(s) 263, 383, 610
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 5 cut(s) 228, 469, 470, 542, 664
CseI GACGC 1 cut(s) 454
CsiI ACCWGGT 1 cut(s) 453
Csp6I GTAC 2 cut(s) 538, 570
CviAII CATG 2 cut(s) 304, 502
CviQI GTAC 2 cut(s) 538, 570
DdeI CTNAG 2 cut(s) 60, 131
DpnI GATC 3 cut(s) 29, 221, 308
DpnII GATC 3 cut(s) 27, 219, 306
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 2 cut(s) 416, 681
EarI CTCTTC 2 cut(s) 416, 681
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 667
Eco24I GRGCYC 2 cut(s) 390, 473
Eco47I GGWCC 2 cut(s) 542, 664
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 88
Eco72I CACGTG 1 cut(s) 637
Eco88I CYCGRG 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 224, 453
EcoT14I CCWWGG 1 cut(s) 667
EcoT38I GRGCYC 2 cut(s) 390, 473
ErhI CCWWGG 1 cut(s) 667
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 2 cut(s) 307, 505
FaiI YATR 5 cut(s) 150, 272, 305, 498, 503
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 3 cut(s) 386, 528, 685
FatI CATG 2 cut(s) 303, 501
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 214, 534
FriOI GRGCYC 2 cut(s) 390, 473
Fsp4HI GCNGC 2 cut(s) 214, 534
FspBI CTAG 3 cut(s) 530, 591, 688
GlaI GCGC 3 cut(s) 262, 382, 609
GluI GCNGC 2 cut(s) 214, 534
HaeII RGCGCY 3 cut(s) 264, 384, 611
HaeIII GGCC 4 cut(s) 230, 359, 471, 557
HapII CCGG 5 cut(s) 210, 258, 348, 431, 558
HgaI GACGC 1 cut(s) 454
HhaI GCGC 3 cut(s) 263, 383, 610
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 2 cut(s) 307, 505
Hin6I GCGC 3 cut(s) 261, 381, 608
HinP1I GCGC 3 cut(s) 261, 381, 608
HinfI GANTC 2 cut(s) 343, 673
HpaII CCGG 5 cut(s) 210, 258, 348, 431, 558
HphI GGTGA 2 cut(s) 382, 635
Hpy188III TCNNGA 4 cut(s) 25, 91, 431, 502
Hpy99I CGWCG 2 cut(s) 185, 368
HpyAV CCTTC 6 cut(s) 19, 28, 112, 196, 370, 430
HpyCH4III ACNGT 2 cut(s) 421, 542
HpyCH4IV ACGT 2 cut(s) 366, 636
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 191, 275, 563
HpyF3I CTNAG 2 cut(s) 60, 131
HpySE526I ACGT 2 cut(s) 366, 636
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 2 cut(s) 307, 505
HspAI GCGC 3 cut(s) 261, 381, 608
Kpn2I TCCGGA 1 cut(s) 430
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 3 cut(s) 27, 219, 306
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 2 cut(s) 140, 605
MabI ACCWGGT 1 cut(s) 453
MaeI CTAG 3 cut(s) 530, 591, 688
MaeII ACGT 2 cut(s) 366, 636
MalI GATC 3 cut(s) 29, 221, 308
MboI GATC 3 cut(s) 27, 219, 306
MboII GAAGA 3 cut(s) 302, 403, 668
MhlI GDGCHC 2 cut(s) 390, 473
MlyI GAGTC 1 cut(s) 667
MmeI TCCRAC 1 cut(s) 189
MroI TCCGGA 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 2 cut(s) 251, 302
MspI CCGG 5 cut(s) 210, 258, 348, 431, 558
MspR9I CCNGG 4 cut(s) 226, 258, 348, 455
MvaI CCWGG 2 cut(s) 226, 455
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 4 cut(s) 52, 191, 275, 563
NaeI GCCGGC 1 cut(s) 559
NciI CCSGG 2 cut(s) 258, 348
NdeII GATC 3 cut(s) 27, 219, 306
NgoMIV GCCGGC 1 cut(s) 557
NlaIII CATG 2 cut(s) 307, 505
NlaIV GGNNCC 6 cut(s) 298, 400, 429, 471, 544, 562
NmeAIII GCCGAG 2 cut(s) 17, 409
PaeR7I CTCGAG 1 cut(s) 474
PagI TCATGA 1 cut(s) 501
PaqCI CACCTGC 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 416
PdiI GCCGGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 343
Pfl23II CGTACG 1 cut(s) 537
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 2 cut(s) 215, 535
PleI GAGTC 1 cut(s) 667
PmaCI CACGTG 1 cut(s) 637
PmlI CACGTG 1 cut(s) 637
PpsI GAGTC 1 cut(s) 667
Ppu21I YACGTR 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 224, 453
PspCI CACGTG 1 cut(s) 637
PspGI CCWGG 2 cut(s) 224, 453
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 6 cut(s) 298, 400, 429, 471, 544, 562
PspOMI GGGCCC 1 cut(s) 469
PspPI GGNCC 5 cut(s) 228, 469, 470, 542, 664
PspXI VCTCGAGB 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 111
RsaI GTAC 2 cut(s) 539, 571
RsaNI GTAC 2 cut(s) 538, 570
RseI CAYNNNNRTG 2 cut(s) 251, 302
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 2 cut(s) 214, 534
Sau3AI GATC 3 cut(s) 27, 219, 306
Sau96I GGNCC 5 cut(s) 228, 469, 470, 542, 664
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 4 cut(s) 226, 258, 348, 455
SduI GDGCHC 2 cut(s) 390, 473
SexAI ACCWGGT 1 cut(s) 453
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 2 cut(s) 542, 664
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 2 cut(s) 251, 302
SmlI CTYRAG 4 cut(s) 264, 474, 547, 613
SmoI CTYRAG 4 cut(s) 264, 474, 547, 613
SpeI ACTAGT 1 cut(s) 590
SsiI CCGC 5 cut(s) 81, 117, 213, 534, 564
SspI AATATT 1 cut(s) 51
SspMI CTAG 3 cut(s) 530, 591, 688
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 4 cut(s) 224, 256, 346, 453
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 2 cut(s) 421, 542
TaiI ACGT 2 cut(s) 369, 639
TaqI TCGA 3 cut(s) 336, 363, 475
TauI GCSGC 2 cut(s) 216, 536
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 178, 518
TspGWI ACGGA 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 542, 664
XhoI CTCGAG 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 3 cut(s) 530, 591, 688
ZraI GACGTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.