Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003252.1

Orthogroup ID

OG0006885

Physical Location & Seq

Genomic Coordinates Reverse (-)

78344 .. 79376

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgccatatctcaattctgaaattgctacgaatgacaagaggacacgacaccacccaccatatcagctagagtcagttggaaactcttcgacaagaacccagaaatgggcgttgttggaaggcgtgcctgatccgtcatctcaaactctggtaatctgcacggcgtcgtgttcccatcttgctgttgttgtcggcgaagaaaaacagagcacacaaggaagaagaatggggagcaacgacgagctcaagtcggaggctttgctggagctgatgaagcagcacctcaacaccgacgccggaaaagccatcgtcgagaagatcggtctcgtttatcagatcaacatcgcaccccagaaaattgggttcaatgaggtgatttataccattgattttaagaaaggggaggtcaagaaaggggcgtacgaaggaggaaaggcggatgcgatattttcgttcaaggacgaggatttcgtgaagattgcgctggggaagatgaatccgcagattgctttcatgaggggcgccatgaagattaagggcagcttgagcgcggccaccaaattcacacctgacatattccccaagccttccaagatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0019752 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0030587 GO:0032502 GO:0032787 GO:0035556 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCP2

Protein Analysis

199

Amino Acids

21.92

Weight (kDa)

9.1

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCP2	PF02036	91 - 189	3.5e-17	SCP-2 sterol transfer family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42890
fragaria_vesca	FvH4_2g34440 FvH4_2g34441
malus_domestica	MD00G1215600.v1.1 MD08G1101600.v1.1 MD15G1083000.v1.1
prunus_persica	Prupe.1G435500_v2.0.a1
pyrus_communis	pycom08g08210
rosa_chinensis	RchiOBHm_Chr5g0032801 RchiOBHm_Chr6g0307931
rosa_laevigata	RLG00000010686 RLG00000033429
rosa_multiflora	Rmu_sc0003252.1_g000020
rosa_roxburghii	Rroxscaffold_2G00127110 Rroxscaffold_7G00160760
rosa_rugosa	Rorug06G0361700 Rorug06G0361800 Rorug06G0361900
rosa_samantha	Rh5CG255500 Rh6AG470800 Rh6BG481800 Rh6CG487200 Rh6DG473300 Rh7DG462100
rosa_wichuraiana	Rw5G020780 Rw6G041110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	521
AccII	CGCG	1 cut(s)	551
AciI	CCGC	3 cut(s)	437, 500, 551
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	560
AcyI	GRCGYC	3 cut(s)	164, 294, 522
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	2 cut(s)	105, 106
AgsI	TTSAA	2 cut(s)	367, 457
AluBI	AGCT	4 cut(s)	67, 244, 268, 543
AluI	AGCT	4 cut(s)	67, 244, 268, 543
Alw21I	GWGCWC	2 cut(s)	212, 246
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	2 cut(s)	277, 540
ApoI	RAATTY	1 cut(s)	560
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
Asp700I	GAANNNNTTC	1 cut(s)	85
AspLEI	GCGC	3 cut(s)	484, 524, 551
AsuHPI	GGTGA	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	212, 246
BbvI	GCAGC	2 cut(s)	289, 552
BccI	CCATC	2 cut(s)	183, 314
BceAI	ACGGC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	525
BisI	GCNGC	3 cut(s)	278, 541, 552
BlsI	GCNGC	3 cut(s)	279, 542, 553
BmiI	GGNNCC	1 cut(s)	523
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	284
BpuEI	CTTGAG	2 cut(s)	230, 565
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	3 cut(s)	164, 294, 522
BsaI	GGTCTC	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 106
Bse8I	GATNNNNATC	1 cut(s)	341
BseGI	GGATG	1 cut(s)	445
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	105, 106
BseXI	GCAGC	2 cut(s)	289, 552
BseYI	CCCAGC	1 cut(s)	484
BsgI	GTGCAG	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	2 cut(s)	212, 246
BsiSI	CCGG	1 cut(s)	297
BsiWI	CGTACG	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	105, 106
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	554
Bso31I	GGTCTC	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	212, 246
Bsp143I	GATC	3 cut(s)	130, 318, 336
BspACI	CCGC	3 cut(s)	437, 500, 551
BspANI	GGCC	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	551
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	329
BssMI	GATC	3 cut(s)	130, 318, 336
BssNI	GRCGYC	3 cut(s)	164, 294, 522
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	3 cut(s)	164, 294, 522
BstC8I	GCNNGC	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	3 cut(s)	484, 524, 551
BstKTI	GATC	3 cut(s)	133, 321, 339
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	130, 318, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 302, 546
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	289, 552
BstXI	CCANNNNNNTGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	554
BtgZI	GCGATG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	125
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	3 cut(s)	484, 524, 551
CseI	GACGC	2 cut(s)	153, 302
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	514, 526
CviJI	RGCY	8 cut(s)	67, 244, 257, 268, 305, 543, 554, 586
CviKI_1	RGCY	8 cut(s)	67, 244, 257, 268, 305, 543, 554, 586
CviQI	GTAC	1 cut(s)	421
DinI	GGCGCC	1 cut(s)	523
DpnI	GATC	3 cut(s)	132, 320, 338
DpnII	GATC	3 cut(s)	130, 318, 336
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	246
EgeI	GGCGCC	1 cut(s)	523
EheI	GGCGCC	1 cut(s)	523
FaeI	CATG	2 cut(s)	517, 529
FaiI	YATR	6 cut(s)	7, 61, 381, 515, 527, 575
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FatI	CATG	2 cut(s)	513, 525
Fnu4HI	GCNGC	3 cut(s)	278, 541, 552
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	278, 541, 552
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	3 cut(s)	483, 523, 550
GluI	GCNGC	3 cut(s)	278, 541, 552
GsaI	CCCAGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	2 cut(s)	153, 302
HhaI	GCGC	3 cut(s)	484, 524, 551
Hin1I	GRCGYC	3 cut(s)	164, 294, 522
Hin1II	CATG	2 cut(s)	517, 529
Hin6I	GCGC	3 cut(s)	482, 522, 549
HinP1I	GCGC	3 cut(s)	482, 522, 549
HinfI	GANTC	2 cut(s)	71, 496
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	19, 253, 336
Hpy188III	TCNNGA	4 cut(s)	313, 409, 472, 514
Hpy99I	CGWCG	4 cut(s)	169, 242, 296, 314
HpyAV	CCTTC	3 cut(s)	113, 419, 597
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 302, 546
Hsp92I	GRCGYC	3 cut(s)	164, 294, 522
Hsp92II	CATG	2 cut(s)	517, 529
HspAI	GCGC	3 cut(s)	482, 522, 549
KasI	GGCGCC	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	130, 318, 336
LmnI	GCTCC	2 cut(s)	231, 265
LpnPI	CCDG	8 cut(s)	113, 134, 141, 248, 310, 365, 470, 582
Lsp1109I	GCAGC	2 cut(s)	289, 552
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	68
MalI	GATC	3 cut(s)	132, 320, 338
MboI	GATC	3 cut(s)	130, 318, 336
MboII	GAAGA	8 cut(s)	78, 209, 231, 234, 328, 487, 502, 541
MhlI	GDGCHC	2 cut(s)	212, 246
MluCI	AATT	4 cut(s)	13, 21, 357, 560
Mly113I	GGCGCC	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	3 cut(s)	58, 96, 231
MnlI	CCTC	8 cut(s)	33, 247, 293, 364, 397, 422, 457, 510
MroXI	GAANNNNTTC	1 cut(s)	85
MseI	TTAA	2 cut(s)	393, 534
MspI	CCGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	3 cut(s)	274, 302, 546
NarI	GGCGCC	1 cut(s)	522
NdeII	GATC	3 cut(s)	130, 318, 336
NlaIII	CATG	2 cut(s)	517, 529
NlaIV	GGNNCC	1 cut(s)	523
PagI	TCATGA	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	496
Pfl23II	CGTACG	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	279, 542, 553
PleI	GAGTC	1 cut(s)	79
PluTI	GGCGCC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	79
Psp124BI	GAGCTC	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	484
PspLI	CGTACG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	523
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	393, 534
SatI	GCNGC	3 cut(s)	278, 541, 552
Sau3AI	GATC	3 cut(s)	130, 318, 336
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	212, 246
SetI	ASST	8 cut(s)	69, 246, 270, 285, 375, 408, 545, 571
SfaNI	GCATC	1 cut(s)	430
SfoI	GGCGCC	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	245, 544
SmoI	CTYRAG	2 cut(s)	245, 544
Sse9I	AATT	4 cut(s)	13, 21, 357, 560
SsiI	CCGC	3 cut(s)	437, 500, 551
SspDI	GGCGCC	1 cut(s)	521
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	246
TaqI	TCGA	2 cut(s)	89, 312
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	4 cut(s)	13, 21, 357, 560
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	393, 534
Tru9I	TTAA	2 cut(s)	393, 534
TseI	GCWGC	2 cut(s)	277, 540
TspDTI	ATGAA	4 cut(s)	287, 502, 509, 542
TspGWI	ACGGA	1 cut(s)	123
XapI	RAATTY	1 cut(s)	560
XmnI	GAANNNNTTC	1 cut(s)	85
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.