Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003396.1

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Forward (+)

116960 .. 118462

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003396.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgggccgaaaccccgacgagcaggggtcggttgtcgcctccgaggttgagcccaagccggcttctgattccgggaagccgttcagcgtcatcgtggagtttaataactggcggaagcagcctgatttggctgaggccgtggcggcgattcgggccttggcgtctgtgggatcatacttgcaccggaaggcatcaatggccagcatatgtgggagcagagagtcggtggagaaaattctggagttcattcaaagtgatgaccgcctaagggggctgagaagattggagtcacgtgtgagtccagaggatgaagctattcatcatggacacagtagcagttctcctttggtcaagttgaagaaggagattgttgctctgggcatgcctgctgtatcgcctactgaaaaggttggaaagtacgtgagtccaagggaatggaatgaaccgattagtgatccagatacggtgagtaatgtctctggtattcttaatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

165

Amino Acids

17.94

Weight (kDa)

6.1

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	112, 143, 262
AclWI	GGATC	2 cut(s)	178, 449
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	234
AcvI	CACGTG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	251, 358
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	2 cut(s)	178, 449
AoxI	GGCC	4 cut(s)	4, 135, 153, 198
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	234
Asp700I	GAANNNNTTC	2 cut(s)	80, 315
AspS9I	GGNCC	2 cut(s)	4, 153
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	478
AxyI	CCTNAGG	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	54
BbrPI	CACGTG	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	64, 122
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	481
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	119, 144
BlsI	GCNGC	2 cut(s)	120, 145
Bme1390I	CCNGG	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	4, 153
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	73
BsaAI	YACGTR	2 cut(s)	293, 421
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	4 cut(s)	42, 138, 156, 428
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	113
Bse21I	CCTNAGG	1 cut(s)	266
BseDI	CCNNGG	4 cut(s)	42, 138, 156, 428
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	123, 266
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	4 cut(s)	6, 137, 155, 200
BsiSI	CCGG	3 cut(s)	59, 72, 184
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	481
BsnI	GGCC	4 cut(s)	6, 137, 155, 200
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	170, 454
BspACI	CCGC	3 cut(s)	112, 143, 262
BspANI	GGCC	4 cut(s)	6, 137, 155, 200
BspCNI	CTCAG	2 cut(s)	124, 267
BspPI	GGATC	2 cut(s)	178, 449
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	4 cut(s)	42, 138, 156, 428
BssMI	GATC	2 cut(s)	170, 454
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	2 cut(s)	156, 428
Bst4CI	ACNGT	2 cut(s)	332, 466
BstACI	GRCGYC	1 cut(s)	161
BstBAI	YACGTR	2 cut(s)	293, 421
BstC8I	GCNNGC	4 cut(s)	60, 202, 383, 387
BstDEI	CTNAG	3 cut(s)	132, 266, 275
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	2 cut(s)	173, 457
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	2 cut(s)	170, 454
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 143, 152, 197
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	6, 137, 155, 200
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	4 cut(s)	60, 202, 383, 387
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	4, 153
CseI	GACGC	2 cut(s)	76, 150
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	323, 382
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	3 cut(s)	132, 266, 275
DpnI	GATC	2 cut(s)	172, 456
DpnII	GATC	2 cut(s)	170, 454
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	156, 428
Eco24I	GRGCYC	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	156, 428
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	2 cut(s)	156, 428
FaeI	CATG	2 cut(s)	326, 385
FaiI	YATR	5 cut(s)	175, 206, 208, 324, 383
FatI	CATG	2 cut(s)	322, 381
FauNDI	CATATG	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	119, 144
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	119, 144
GluI	GCNGC	2 cut(s)	119, 144
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	4 cut(s)	6, 137, 155, 200
HapII	CCGG	3 cut(s)	59, 72, 184
HgaI	GACGC	2 cut(s)	76, 150
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	326, 385
HinfI	GANTC	6 cut(s)	68, 148, 221, 287, 298, 424
HpaII	CCGG	3 cut(s)	59, 72, 184
HphI	GGTGA	1 cut(s)	478
Hpy188I	TCNGA	3 cut(s)	43, 67, 497
Hpy188III	TCNNGA	3 cut(s)	239, 302, 458
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	181, 355
HpyCH4III	ACNGT	2 cut(s)	332, 466
HpyCH4IV	ACGT	2 cut(s)	292, 420
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 143, 152, 197
HpyF3I	CTNAG	3 cut(s)	132, 266, 275
HpySE526I	ACGT	2 cut(s)	292, 420
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	326, 385
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	170, 454
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	200
MaeII	ACGT	2 cut(s)	292, 420
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	2 cut(s)	172, 456
MboI	GATC	2 cut(s)	170, 454
MboII	GAAGA	2 cut(s)	291, 370
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	4 cut(s)	230, 296, 307, 433
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	37, 49, 127, 298
Mox20I	TGGCCA	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	58
MroXI	GAANNNNTTC	2 cut(s)	80, 315
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	102, 489
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	3 cut(s)	59, 72, 184
MspR9I	CCNGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	4 cut(s)	118, 143, 152, 197
NaeI	GCCGGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	73
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	2 cut(s)	170, 454
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	326, 385
NmuCI	GTSAC	1 cut(s)	288
NspI	RCATGY	1 cut(s)	385
PaeI	GCATGC	1 cut(s)	385
PdiI	GCCGGC	1 cut(s)	60
PdmI	GAANNNNTTC	2 cut(s)	80, 315
PfeI	GAWTC	2 cut(s)	68, 148
PfoI	TCCNGGA	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	120, 145
PleI	GAGTC	4 cut(s)	229, 295, 306, 432
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	4 cut(s)	229, 295, 306, 432
Ppu21I	YACGTR	2 cut(s)	293, 421
PspCI	CACGTG	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	4, 153
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	102, 489
SatI	GCNGC	2 cut(s)	119, 144
Sau3AI	GATC	2 cut(s)	170, 454
Sau96I	GGNCC	2 cut(s)	4, 153
SchI	GAGTC	4 cut(s)	230, 296, 307, 433
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	5 cut(s)	48, 295, 316, 411, 423
SfaNI	GCATC	1 cut(s)	200
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	3 cut(s)	112, 143, 262
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	156, 428
TaaI	ACNGT	2 cut(s)	332, 466
TaiI	ACGT	2 cut(s)	295, 423
TasI	AATT	1 cut(s)	234
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	68, 148
Tru1I	TTAA	2 cut(s)	102, 489
Tru9I	TTAA	2 cut(s)	102, 489
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	4 cut(s)	235, 308, 324, 456
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	2 cut(s)	80, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.