Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00889

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Reverse (-)

79493 .. 81091

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGAAGACCGAGCTCATGTCGTAAAAGTTCTTGGAATCCCTTCGCTCACTTCGTCTCAGAACCTACTCTACTGTCACTTCCGGCTCTCGATTTTCAGGTCGAGGAAGGTCTCGCTGACCTTGTCGCCGGTGAAGGAAAGGACGGGGATGGTGGCGGGGTCGGTTGTCGCCGCCGAGGCTGAATCCAAGCCGGCTTCTGATTCCGGGAAGCCGTTCAGCGTCATCGTGGAGTTTAATAACTGGCGGAAGCAGCCTCATTTGGCTGAGGCCGTGGCGGCGATTCGGGCCTTGGCGTCTGTTATAAGTTCCAGCGAGGCCCTGATGGAGCTCGAAATTGAGCTCAAGAAGGCTTCTGATTCCCTAAAGATTATCCCTGCTATCAGCAGTGGCATTACAGATATCTCCTTTGACACTGTAGGCTATGCTTGGCAATTTTCAAATTGCATACTAACAGCAAGCTACTCGATTGACATTGGTGAAGGGAGTGGAGAATTCAAATGCCTGCCAGGTCCTGCACTGTATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

176

Amino Acids

18.98

Weight (kDa)

5.93

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AciI	CCGC	4 cut(s)	158, 174, 247, 278
AcsI	RAATTY	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	441, 499
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	4 cut(s)	17, 331, 343, 462
AluI	AGCT	4 cut(s)	17, 331, 343, 462
Alw21I	GWGCWC	3 cut(s)	19, 333, 345
Alw26I	GTCTC	2 cut(s)	63, 118
AlwNI	CAGNNNCTG	1 cut(s)	515
AoxI	GGCC	3 cut(s)	270, 288, 318
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	494
Asp700I	GAANNNNTTC	2 cut(s)	43, 215
AspS9I	GGNCC	3 cut(s)	288, 319, 512
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	145, 491
AvaII	GGWCC	1 cut(s)	512
BanII	GRGCYC	3 cut(s)	19, 333, 345
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	3 cut(s)	19, 333, 345
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	145, 319
BceAI	ACGGC	2 cut(s)	199, 257
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	63, 118
BfmI	CTRYAG	1 cut(s)	417
BglI	GCCNNNNNGGC	2 cut(s)	179, 278
BisI	GCNGC	3 cut(s)	174, 254, 279
BlsI	GCNGC	3 cut(s)	175, 255, 280
Bme1390I	CCNGG	2 cut(s)	208, 510
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	3 cut(s)	288, 319, 512
BmrFI	CCNGG	2 cut(s)	208, 510
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	177, 273, 291
Bse118I	RCCGGY	2 cut(s)	130, 193
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	177, 273, 291
BseGI	GGATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	74, 258
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	272, 290, 320
BsiHKAI	GWGCWC	3 cut(s)	19, 333, 345
BsiSI	CCGG	4 cut(s)	85, 131, 194, 207
BsmAI	GTCTC	2 cut(s)	63, 118
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	272, 290, 320
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	19, 333, 345
BspACI	CCGC	4 cut(s)	158, 174, 247, 278
BspANI	GGCC	3 cut(s)	272, 290, 320
BspCNI	CTCAG	2 cut(s)	73, 259
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	2 cut(s)	130, 193
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	2 cut(s)	130, 193
BssECI	CCNNGG	3 cut(s)	177, 273, 291
BssNI	GRCGYC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	77, 418, 522
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	3 cut(s)	195, 460, 506
BstDEI	CTNAG	2 cut(s)	60, 267
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	63, 118
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 253, 278, 287
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	2 cut(s)	206, 508
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	272, 290, 320
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	3 cut(s)	394, 414, 518
Cac8I	GCNNGC	3 cut(s)	195, 460, 506
CaiI	CAGNNNCTG	1 cut(s)	515
Cfr10I	RCCGGY	2 cut(s)	130, 193
Cfr13I	GGNCC	3 cut(s)	288, 319, 512
CseI	GACGC	2 cut(s)	211, 285
CviAII	CATG	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	60, 267
EciI	GGCGGA	1 cut(s)	262
Ecl136II	GAGCTC	3 cut(s)	17, 331, 343
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	3 cut(s)	19, 333, 345
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	512
Eco53kI	GAGCTC	3 cut(s)	17, 331, 343
EcoICRI	GAGCTC	3 cut(s)	17, 331, 343
EcoO109I	RGGNCCY	2 cut(s)	319, 512
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	3 cut(s)	19, 333, 345
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	1 cut(s)	23
FaiI	YATR	4 cut(s)	21, 305, 426, 449
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	174, 254, 279
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	3 cut(s)	19, 333, 345
Fsp4HI	GCNGC	3 cut(s)	174, 254, 279
GluI	GCNGC	3 cut(s)	174, 254, 279
HaeIII	GGCC	3 cut(s)	272, 290, 320
HapII	CCGG	4 cut(s)	85, 131, 194, 207
HgaI	GACGC	2 cut(s)	211, 285
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	5 cut(s)	39, 185, 203, 283, 359
HpaII	CCGG	4 cut(s)	85, 131, 194, 207
HphI	GGTGA	2 cut(s)	145, 491
Hpy188I	TCNGA	3 cut(s)	63, 202, 358
Hpy188III	TCNNGA	2 cut(s)	91, 346
HpyAV	CCTTC	5 cut(s)	54, 103, 130, 343, 476
HpyCH4III	ACNGT	3 cut(s)	77, 418, 522
HpyCH4V	TGCA	2 cut(s)	447, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 253, 278, 287
HpyF3I	CTNAG	2 cut(s)	60, 267
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	77
MboII	GAAGA	2 cut(s)	17, 20
MhlI	GDGCHC	3 cut(s)	19, 333, 345
MluCI	AATT	4 cut(s)	336, 434, 442, 494
MnlI	CCTC	5 cut(s)	99, 172, 262, 267, 310
MroNI	GCCGGC	1 cut(s)	193
MroXI	GAANNNNTTC	2 cut(s)	43, 215
MseI	TTAA	1 cut(s)	237
MspI	CCGG	4 cut(s)	85, 131, 194, 207
MspR9I	CCNGG	2 cut(s)	208, 510
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	4 cut(s)	179, 253, 278, 287
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	208
NgoMIV	GCCGGC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	23
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PdiI	GCCGGC	1 cut(s)	195
PdmI	GAANNNNTTC	2 cut(s)	43, 215
PfeI	GAWTC	5 cut(s)	39, 185, 203, 283, 359
PflFI	GACNNNGTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	175, 255, 280
PpuMI	RGGWCCY	1 cut(s)	512
PsiI	TTATAA	1 cut(s)	305
Psp124BI	GAGCTC	3 cut(s)	19, 333, 345
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspPI	GGNCC	3 cut(s)	288, 319, 512
PspPPI	RGGWCCY	1 cut(s)	512
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PstNI	CAGNNNCTG	1 cut(s)	515
PsyI	GACNNNGTC	1 cut(s)	124
SacI	GAGCTC	3 cut(s)	19, 333, 345
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	174, 254, 279
Sau96I	GGNCC	3 cut(s)	288, 319, 512
ScrFI	CCNGG	2 cut(s)	208, 510
SduI	GDGCHC	3 cut(s)	19, 333, 345
SetI	ASST	9 cut(s)	19, 69, 104, 114, 125, 333, 345, 464, 514
SfcI	CTRYAG	1 cut(s)	417
SgrAI	CRCCGGYG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	336, 434, 442, 494
SsiI	CCGC	4 cut(s)	158, 174, 247, 278
SstI	GAGCTC	3 cut(s)	19, 333, 345
StyD4I	CCNGG	2 cut(s)	206, 508
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	77, 418, 522
TaqI	TCGA	4 cut(s)	92, 104, 333, 467
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	336, 434, 442, 494
TauI	GCSGC	2 cut(s)	176, 281
TfiI	GAWTC	5 cut(s)	39, 185, 203, 283, 359
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	3 cut(s)	394, 421, 525
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	77
TspRI	CASTG	3 cut(s)	394, 421, 525
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	1 cut(s)	494
XmnI	GAANNNNTTC	2 cut(s)	43, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.