Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Forward (+)

60502333 .. 60503138

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG428700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGAAGAAGACCGAGCTCATGTCGTAAAAGTTCTTGGAATCCCTTCGCTCACTTCGTGTCAGAACCTACTCTACTTTCACTTCCGGCTCTCGATTTTCAGGTCGAGGAAGGTCTCGCTGACCTTGTCACCGGTGAAGGAAAGGACGGGGATGGTGGCGGTTAGGCCTCATTTGGCTGAGGCCGTGGCGGCGATTCGGGCCTTGGCGTCTGTTATAAGTTCCAGCGAGGCCCTGATGGAGCTCGAAATTGAGCTCAAGAAGGCTTCTGATTCCCTAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

94

Amino Acids

10.39

Weight (kDa)

9.36

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AciI	CCGC	2 cut(s)	158, 188
AcyI	GRCGYC	1 cut(s)	206
AdeI	CACNNNGTG	1 cut(s)	57
AgeI	ACCGGT	1 cut(s)	130
AluBI	AGCT	3 cut(s)	17, 241, 253
AluI	AGCT	3 cut(s)	17, 241, 253
Alw21I	GWGCWC	3 cut(s)	19, 243, 255
Alw26I	GTCTC	1 cut(s)	118
AoxI	GGCC	4 cut(s)	164, 180, 198, 228
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	198, 229
AsuHPI	GGTGA	2 cut(s)	120, 145
BanII	GRGCYC	3 cut(s)	19, 243, 255
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	3 cut(s)	19, 243, 255
BbvCI	CCTCAGC	1 cut(s)	177
BccI	CCATC	2 cut(s)	145, 229
BceAI	ACGGC	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	198, 229
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	183, 201
BsaWI	WCCGGW	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	183, 201
BseGI	GGATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	168
BshFI	GGCC	4 cut(s)	166, 182, 200, 230
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	3 cut(s)	19, 243, 255
BsiSI	CCGG	2 cut(s)	85, 131
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	4 cut(s)	166, 182, 200, 230
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	19, 243, 255
BspACI	CCGC	2 cut(s)	158, 188
BspANI	GGCC	4 cut(s)	166, 182, 200, 230
BspCNI	CTCAG	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	183, 201
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 197
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	166, 182, 200, 230
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	198, 229
CseI	GACGC	1 cut(s)	195
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	177
DraIII	CACNNNGTG	1 cut(s)	57
Ecl136II	GAGCTC	3 cut(s)	17, 241, 253
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	166
Eco24I	GRGCYC	3 cut(s)	19, 243, 255
Eco31I	GGTCTC	1 cut(s)	118
Eco53kI	GAGCTC	3 cut(s)	17, 241, 253
EcoICRI	GAGCTC	3 cut(s)	17, 241, 253
EcoO109I	RGGNCCY	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	3 cut(s)	19, 243, 255
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	23
FaiI	YATR	2 cut(s)	21, 215
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	3 cut(s)	19, 243, 255
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	4 cut(s)	166, 182, 200, 230
HapII	CCGG	2 cut(s)	85, 131
HgaI	GACGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	3 cut(s)	39, 193, 269
HpaII	CCGG	2 cut(s)	85, 131
HphI	GGTGA	2 cut(s)	120, 145
Hpy188I	TCNGA	2 cut(s)	63, 268
Hpy188III	TCNNGA	2 cut(s)	91, 256
HpyAV	CCTTC	4 cut(s)	54, 103, 130, 253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 197
HpyF3I	CTNAG	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	5 cut(s)	85, 98, 144, 235, 245
MaeIII	GTNAC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	17, 20
MhlI	GDGCHC	3 cut(s)	19, 243, 255
MluCI	AATT	1 cut(s)	246
MnlI	CCTC	4 cut(s)	99, 172, 177, 220
MroXI	GAANNNNTTC	1 cut(s)	43
MspI	CCGG	2 cut(s)	85, 131
MwoI	GCNNNNNNNGC	2 cut(s)	188, 197
NlaIII	CATG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	39, 193, 269
PflFI	GACNNNGTC	1 cut(s)	124
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	215
Psp124BI	GAGCTC	3 cut(s)	19, 243, 255
PspPI	GGNCC	2 cut(s)	198, 229
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PsyI	GACNNNGTC	1 cut(s)	124
SacI	GAGCTC	3 cut(s)	19, 243, 255
SatI	GCNGC	1 cut(s)	189
Sau96I	GGNCC	2 cut(s)	198, 229
SduI	GDGCHC	3 cut(s)	19, 243, 255
SetI	ASST	8 cut(s)	19, 69, 104, 114, 125, 243, 255, 282
SgrAI	CRCCGGYG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	246
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	2 cut(s)	158, 188
SstI	GAGCTC	3 cut(s)	19, 243, 255
StuI	AGGCCT	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	3 cut(s)	92, 104, 243
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	246
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	39, 193, 269
TseFI	GTSAC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	126
Tth111I	GACNNNGTC	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.