Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Forward (+)

93794943 .. 93799150

Gene Structure 4208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTGGAAATTGCTCGTAAACTTCTTGTTGATGGTTATTATATGGAAAGGACGGGGAGGGTGGCGGTTAGGGTTAGGGGTCGTCACCAGAGACTGGCTCGCCCAGGTCCAGGCCGCCGTAGACCGAAACCCCGACGAGCAGTGGTCGGCTGTCGCTGCCAAGGCTGAGCCCAAGCCGGCTTCTGATTCCGGGAAGCCGTTCAGCGTCATCGTGGAGTTTAATAACTGGCGGAAGCAGCTTGATTTGGCTGAGACCGTGGCGGCGATTCGGGCCTTGGCGTCTGTTATAAGGTCCAGCGAGGCCACCACTGTGATGGAGCTCAAAATTGAGCTCATGAAGGCTTCTGATTCCCTAAAGGTGACTCAATTTCTCAGCCTTAATCTGTGTTCTGATTCTTTGATTGGCAATTATCTATCTGAGCTACTCGGGGAGCGTCACAAGCTCGGTCCATTCCTCCCTGTGCTACCGAATTGCTGCAGTTTATTGAATCAAGGGGAAGATGCACCCTTCCGATGGGATCATGTTAAGGTCAAGTTGAAGGAGGTCTCTAGAGTTCTTGTGCTCTTGGAATTGCTTGTCTTTGATGCCCAAATTGCTTGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

201

Amino Acids

22.41

Weight (kDa)

7.65

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	4 cut(s)	64, 114, 229, 260
AclWI	GGATC	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	278
AfiI	CCNNNNNNNGG	3 cut(s)	93, 109, 513
AgsI	TTSAA	2 cut(s)	487, 538
AjnI	CCWGG	2 cut(s)	102, 108
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	5 cut(s)	238, 319, 331, 421, 442
AluI	AGCT	5 cut(s)	238, 319, 331, 421, 442
Alw21I	GWGCWC	3 cut(s)	321, 333, 564
Alw26I	GTCTC	3 cut(s)	84, 245, 550
AlwI	GGATC	1 cut(s)	525
AlwNI	CAGNNNCTG	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	3 cut(s)	111, 270, 300
ApeKI	GCWGC	3 cut(s)	155, 235, 474
ArsI	GACNNNNNNTTYG	1 cut(s)	583
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	4 cut(s)	106, 270, 291, 446
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	76, 370
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	3 cut(s)	106, 291, 446
BanII	GRGCYC	3 cut(s)	171, 321, 333
Bbv12I	GWGCWC	3 cut(s)	321, 333, 564
BbvI	GCAGC	3 cut(s)	142, 247, 461
BccI	CCATC	3 cut(s)	25, 307, 507
BceAI	ACGGC	2 cut(s)	101, 181
BciT130I	CCWGG	2 cut(s)	104, 110
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	84, 245, 550
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	475
BisI	GCNGC	5 cut(s)	114, 156, 236, 261, 475
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	5 cut(s)	115, 157, 237, 262, 476
Bme1390I	CCNGG	3 cut(s)	104, 110, 190
Bme18I	GGWCC	3 cut(s)	106, 291, 446
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	4 cut(s)	106, 270, 291, 446
BmrFI	CCNGG	3 cut(s)	104, 110, 190
BmsI	GCATC	2 cut(s)	490, 574
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
Bpu1102I	GCTNAGC	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	278
BsaI	GGTCTC	2 cut(s)	245, 550
BsaJI	CCNNGG	4 cut(s)	102, 159, 255, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 109, 513
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	98, 230
BseBI	CCWGG	2 cut(s)	104, 110
BseDI	CCNNGG	4 cut(s)	102, 159, 255, 273
BseLI	CCNNNNNNNGG	3 cut(s)	93, 109, 513
BseMII	CTCAG	4 cut(s)	156, 240, 385, 408
BseNI	ACTGG	2 cut(s)	98, 230
BseXI	GCAGC	3 cut(s)	142, 247, 461
BshFI	GGCC	3 cut(s)	113, 272, 302
BsiHKAI	GWGCWC	3 cut(s)	321, 333, 564
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	176, 189
BslI	CCNNNNNNNGG	3 cut(s)	93, 109, 513
BsmAI	GTCTC	3 cut(s)	84, 245, 550
BsnI	GGCC	3 cut(s)	113, 272, 302
Bso31I	GGTCTC	2 cut(s)	245, 550
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	4 cut(s)	171, 321, 333, 564
Bsp143I	GATC	1 cut(s)	517
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	4 cut(s)	64, 114, 229, 260
BspANI	GGCC	3 cut(s)	113, 272, 302
BspCNI	CTCAG	4 cut(s)	157, 241, 384, 409
BspHI	TCATGA	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	479
BspPI	GGATC	1 cut(s)	525
BspTNI	GGTCTC	2 cut(s)	245, 550
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	98, 230
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	4 cut(s)	102, 159, 255, 273
BssMI	GATC	1 cut(s)	517
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	159, 273
Bst2UI	CCWGG	2 cut(s)	104, 110
Bst4CI	ACNGT	2 cut(s)	256, 310
BstACI	GRCGYC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	99, 177
BstDEI	CTNAG	4 cut(s)	165, 249, 371, 417
BstDSI	CCRYGG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	3 cut(s)	84, 245, 550
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 161, 235, 269, 439, 593
BstNI	CCWGG	2 cut(s)	104, 110
BstSCI	CCNGG	3 cut(s)	102, 108, 188
BstSFI	CTRYAG	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	142, 247, 461
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	113, 272, 302
BtgI	CCRYGG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	146, 306
Cac8I	GCNNGC	2 cut(s)	99, 177
CaiI	CAGNNNCTG	1 cut(s)	93
CciI	TCATGA	1 cut(s)	333
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	4 cut(s)	106, 270, 291, 446
CseI	GACGC	3 cut(s)	193, 267, 422
CviAII	CATG	2 cut(s)	334, 521
DdeI	CTNAG	4 cut(s)	165, 249, 371, 417
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	2 cut(s)	319, 331
Eco130I	CCWWGG	2 cut(s)	159, 273
Eco24I	GRGCYC	3 cut(s)	171, 321, 333
Eco31I	GGTCTC	2 cut(s)	245, 550
Eco47I	GGWCC	3 cut(s)	106, 291, 446
Eco53kI	GAGCTC	2 cut(s)	319, 331
Eco88I	CYCGRG	1 cut(s)	425
EcoICRI	GAGCTC	2 cut(s)	319, 331
EcoRII	CCWGG	2 cut(s)	102, 108
EcoT14I	CCWWGG	2 cut(s)	159, 273
EcoT38I	GRGCYC	3 cut(s)	171, 321, 333
ErhI	CCWWGG	2 cut(s)	159, 273
FaeI	CATG	2 cut(s)	337, 524
FaiI	YATR	5 cut(s)	41, 43, 287, 335, 522
FatI	CATG	2 cut(s)	333, 520
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	5 cut(s)	114, 156, 236, 261, 475
FriOI	GRGCYC	3 cut(s)	171, 321, 333
Fsp4HI	GCNGC	5 cut(s)	114, 156, 236, 261, 475
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	5 cut(s)	114, 156, 236, 261, 475
HaeIII	GGCC	3 cut(s)	113, 272, 302
HapII	CCGG	2 cut(s)	176, 189
HgaI	GACGC	3 cut(s)	193, 267, 422
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	337, 524
HinfI	GANTC	6 cut(s)	185, 265, 347, 361, 392, 487
HpaII	CCGG	2 cut(s)	176, 189
HphI	GGTGA	2 cut(s)	76, 370
Hpy166II	GTNNAC	2 cut(s)	19, 121
Hpy188I	TCNGA	5 cut(s)	184, 346, 391, 418, 512
Hpy188III	TCNNGA	2 cut(s)	334, 549
Hpy8I	GTNNAC	2 cut(s)	19, 121
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	331, 517, 532
HpyCH4III	ACNGT	2 cut(s)	256, 310
HpyCH4V	TGCA	2 cut(s)	477, 503
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 161, 235, 269, 439, 593
HpyF3I	CTNAG	4 cut(s)	165, 249, 371, 417
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	337, 524
KroI	GCCGGC	1 cut(s)	175
KroNI	GCCGGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	517
LmnI	GCTCC	2 cut(s)	316, 430
Lsp1109I	GCAGC	3 cut(s)	142, 247, 461
LweI	GCATC	2 cut(s)	490, 574
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	3 cut(s)	82, 358, 434
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	1 cut(s)	509
MhlI	GDGCHC	4 cut(s)	171, 321, 333, 564
MluCI	AATT	7 cut(s)	8, 324, 365, 406, 469, 569, 591
MlyI	GAGTC	1 cut(s)	355
MnlI	CCTC	4 cut(s)	50, 292, 464, 535
MroNI	GCCGGC	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	3 cut(s)	219, 378, 525
MslI	CAYNNNNRTG	2 cut(s)	308, 311
MspI	CCGG	2 cut(s)	176, 189
MspR9I	CCNGG	3 cut(s)	104, 110, 190
MvaI	CCWGG	2 cut(s)	104, 110
MwoI	GCNNNNNNNGC	6 cut(s)	155, 161, 235, 269, 439, 593
NaeI	GCCGGC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	517
NgoMIV	GCCGGC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	337, 524
NmuCI	GTSAC	3 cut(s)	82, 358, 434
OliI	CACNNNNGTG	1 cut(s)	308
PagI	TCATGA	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	5 cut(s)	185, 265, 347, 392, 487
PflMI	CCANNNNNTGG	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	188
PkrI	GCNGC	5 cut(s)	115, 157, 237, 262, 476
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	287
Psp124BI	GAGCTC	2 cut(s)	321, 333
Psp6I	CCWGG	2 cut(s)	102, 108
PspGI	CCWGG	2 cut(s)	102, 108
PspPI	GGNCC	4 cut(s)	106, 270, 291, 446
PstI	CTGCAG	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	93
RseI	CAYNNNNRTG	2 cut(s)	308, 311
SacI	GAGCTC	2 cut(s)	321, 333
SaqAI	TTAA	3 cut(s)	219, 378, 525
SatI	GCNGC	5 cut(s)	114, 156, 236, 261, 475
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	4 cut(s)	106, 270, 291, 446
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	3 cut(s)	104, 110, 190
SduI	GDGCHC	4 cut(s)	171, 321, 333, 564
SfaNI	GCATC	2 cut(s)	490, 574
SfcI	CTRYAG	1 cut(s)	475
SinI	GGWCC	3 cut(s)	106, 291, 446
SmiMI	CAYNNNNRTG	2 cut(s)	308, 311
Sse9I	AATT	7 cut(s)	8, 324, 365, 406, 469, 569, 591
SsiI	CCGC	4 cut(s)	64, 114, 229, 260
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	2 cut(s)	321, 333
StyD4I	CCNGG	3 cut(s)	102, 108, 188
StyI	CCWWGG	2 cut(s)	159, 273
TaaI	ACNGT	2 cut(s)	256, 310
TaqII	GACCGA	2 cut(s)	138, 434
TasI	AATT	7 cut(s)	8, 324, 365, 406, 469, 569, 591
TauI	GCSGC	2 cut(s)	116, 263
TfiI	GAWTC	5 cut(s)	185, 265, 347, 392, 487
Tru1I	TTAA	3 cut(s)	219, 378, 525
Tru9I	TTAA	3 cut(s)	219, 378, 525
TscAI	CASTG	2 cut(s)	146, 313
TseFI	GTSAC	3 cut(s)	82, 358, 434
TseI	GCWGC	3 cut(s)	155, 235, 474
Tsp45I	GTSAC	3 cut(s)	82, 358, 434
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	146, 313
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	3 cut(s)	106, 291, 446
XbaI	TCTAGA	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.