Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Forward (+)

56370517 .. 56374331

Gene Structure 3815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAAGAAGACCGAGCTCATGTCGTAAAAGTTCTTGGAATCCCTTCGCTCACTTCGTCTCAGAACCTACTCTACTGTCACTTCCGGCTCTCGATTTTCAGGTCGAGGAAGGTCTCGCTGACCTTGTCGCCGGTGAAGGAAAGGACGGGGATGGTGGCGGGGTCGGTTGTCGCCGCCGAGGCTGAATCCAAGCCGGCTTCTGATTCCGGGAAGCCGTTCAGCGTCATCGTGGAGTTTAATAACTGGCGGAAGCAGCCTCATTTGGCTGAGGCCGTGGCGGCGATTCGGGCCTTGGCGTCTGTTATAAGTTCCAGCGAGGCCCTGATGGAGCTCGAAATTGAGCTCAAGAAGGCTTCTGATTCCCTAAAGATTATCCCTGCTATCAGCAGTGGCATTACAGATATCTCCTTTGACACTGTAGGCTATGCTTGGCAATTTTCAAATTGCATACTAACAGCAAGCTACTCGAATGTGATGTTAGTGTTGGTGGAGTATGACGGGGTGTCGACTGTGGAGTGTGGACTCCATTCCTCTTCGTTGGACTCCATTCCTCTTCGTTCTATTGAGATGTGGATCACCGTGAAGGGCTTGCCTCCTACTTTGCGCAATAAGCTTCTCCTTTCTATGATTGGTTCTTCGATTGGAAGGGTAATCAGGTTGGATCATGTGGCTCTGAATCGAAAGGAGGAAGAACAAAGGATTCGATTGGAGATGGACACAAGGCGGCGTTTCAGAATCTTTCGCCATTTTTCCTTCTCGGCGAATGTGGAGGTGGACGAGAAGGAGGCATTGCAAGTGACGCCTCCGGTGGCAGCAATGGCTGACCTGAATCTGGTGACTACTAGAGGGTCTACGGTTTCAGCCCATTCTGGTATTTTGGGGGCTGAGGTGGCTAGCTTGTCAGCGGAGTGGTGCGGTGTTGCTGATGGAGGGGCAGCAGCTGGATTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

317

Amino Acids

34.46

Weight (kDa)

6.2

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
Acc16I	TGCGCA	1 cut(s)	605
AccI	GTMKAC	2 cut(s)	506, 851
AciI	CCGC	7 cut(s)	158, 174, 247, 278, 724, 905, 915
AclWI	GGATC	2 cut(s)	581, 669
AcyI	GRCGYC	2 cut(s)	296, 800
AfiI	CCNNNNNNNGG	1 cut(s)	832
AgsI	TTSAA	1 cut(s)	441
AhdI	GACNNNNNGTC	1 cut(s)	502
AluBI	AGCT	7 cut(s)	17, 331, 343, 462, 613, 897, 941
AluI	AGCT	7 cut(s)	17, 331, 343, 462, 613, 897, 941
Alw21I	GWGCWC	3 cut(s)	19, 333, 345
Alw26I	GTCTC	2 cut(s)	63, 118
AlwI	GGATC	2 cut(s)	581, 669
AlwNI	CAGNNNCTG	1 cut(s)	941
AoxI	GGCC	3 cut(s)	270, 288, 318
ApeKI	GCWGC	4 cut(s)	253, 812, 935, 938
Asp700I	GAANNNNTTC	2 cut(s)	43, 215
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	288, 319
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	145, 568, 847
AsuNHI	GCTAGC	1 cut(s)	893
BanII	GRGCYC	3 cut(s)	19, 333, 345
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	3 cut(s)	19, 333, 345
BbvCI	CCTCAGC	2 cut(s)	267, 885
BbvI	GCAGC	4 cut(s)	265, 824, 947, 950
BccI	CCATC	4 cut(s)	145, 319, 706, 920
BceAI	ACGGC	2 cut(s)	199, 257
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	63, 118
BfaI	CTAG	2 cut(s)	843, 894
BfmI	CTRYAG	1 cut(s)	417
BglI	GCCNNNNNGGC	2 cut(s)	179, 278
BisI	GCNGC	7 cut(s)	174, 254, 279, 725, 813, 936, 939
BlsI	GCNGC	7 cut(s)	175, 255, 280, 726, 814, 937, 940
Bme1390I	CCNGG	1 cut(s)	208
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	288, 319
BmrFI	CCNGG	1 cut(s)	208
BmtI	GCTAGC	1 cut(s)	897
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	2 cut(s)	267, 885
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	572
BsaHI	GRCGYC	2 cut(s)	296, 800
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	177, 273, 291
BsaWI	WCCGGW	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	1 cut(s)	832
Bse118I	RCCGGY	2 cut(s)	130, 193
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	2 cut(s)	788, 822
Bse8I	GATNNNNATC	1 cut(s)	572
BseDI	CCNNGG	3 cut(s)	177, 273, 291
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	572
BseLI	CCNNNNNNNGG	1 cut(s)	832
BseMI	GCAATG	2 cut(s)	788, 822
BseMII	CTCAG	3 cut(s)	74, 258, 876
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	4 cut(s)	265, 824, 947, 950
BshFI	GGCC	3 cut(s)	272, 290, 320
BsiHKAI	GWGCWC	3 cut(s)	19, 333, 345
BsiSI	CCGG	5 cut(s)	85, 131, 194, 207, 806
BslI	CCNNNNNNNGG	1 cut(s)	832
BsmAI	GTCTC	2 cut(s)	63, 118
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	272, 290, 320
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	19, 333, 345
Bsp143I	GATC	2 cut(s)	573, 661
BspACI	CCGC	7 cut(s)	158, 174, 247, 278, 724, 905, 915
BspANI	GGCC	3 cut(s)	272, 290, 320
BspCNI	CTCAG	3 cut(s)	73, 259, 877
BspOI	GCTAGC	1 cut(s)	897
BspPI	GGATC	2 cut(s)	581, 669
BspTNI	GGTCTC	1 cut(s)	118
BsrDI	GCAATG	2 cut(s)	788, 822
BsrFI	RCCGGY	2 cut(s)	130, 193
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	2 cut(s)	130, 193
BssECI	CCNNGG	3 cut(s)	177, 273, 291
BssMI	GATC	2 cut(s)	573, 661
BssNI	GRCGYC	2 cut(s)	296, 800
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	5 cut(s)	77, 418, 511, 580, 856
Bst6I	CTCTTC	2 cut(s)	538, 558
BstACI	GRCGYC	2 cut(s)	296, 800
BstC8I	GCNNGC	4 cut(s)	195, 460, 590, 895
BstDEI	CTNAG	3 cut(s)	60, 267, 885
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	2 cut(s)	576, 664
BstMAI	GTCTC	2 cut(s)	63, 118
BstMBI	GATC	2 cut(s)	573, 661
BstMWI	GCNNNNNNNGC	8 cut(s)	179, 253, 278, 287, 610, 799, 818, 890
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	4 cut(s)	265, 824, 947, 950
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	272, 290, 320
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	394, 414
Cac8I	GCNNGC	4 cut(s)	195, 460, 590, 895
CaiI	CAGNNNCTG	1 cut(s)	941
CfoI	GCGC	1 cut(s)	606
Cfr10I	RCCGGY	2 cut(s)	130, 193
Cfr13I	GGNCC	2 cut(s)	288, 319
CseI	GACGC	3 cut(s)	211, 285, 808
CviAII	CATG	2 cut(s)	20, 665
DdeI	CTNAG	3 cut(s)	60, 267, 885
DpnI	GATC	2 cut(s)	575, 663
DpnII	GATC	2 cut(s)	573, 661
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	538, 558
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EarI	CTCTTC	2 cut(s)	538, 558
EciI	GGCGGA	1 cut(s)	262
Ecl136II	GAGCTC	3 cut(s)	17, 331, 343
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	3 cut(s)	19, 333, 345
Eco31I	GGTCTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	403
Eco53kI	GAGCTC	3 cut(s)	17, 331, 343
EcoICRI	GAGCTC	3 cut(s)	17, 331, 343
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	3 cut(s)	19, 333, 345
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	23, 668
FaiI	YATR	7 cut(s)	21, 305, 426, 449, 495, 626, 666
FatI	CATG	2 cut(s)	19, 664
FauI	CCCGC	1 cut(s)	151
FblI	GTMKAC	2 cut(s)	506, 851
Fnu4HI	GCNGC	7 cut(s)	174, 254, 279, 725, 813, 936, 939
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	3 cut(s)	19, 333, 345
Fsp4HI	GCNGC	7 cut(s)	174, 254, 279, 725, 813, 936, 939
FspBI	CTAG	2 cut(s)	843, 894
FspI	TGCGCA	1 cut(s)	605
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	7 cut(s)	174, 254, 279, 725, 813, 936, 939
HaeIII	GGCC	3 cut(s)	272, 290, 320
HapII	CCGG	5 cut(s)	85, 131, 194, 207, 806
HgaI	GACGC	3 cut(s)	211, 285, 808
HhaI	GCGC	1 cut(s)	606
Hin1I	GRCGYC	2 cut(s)	296, 800
Hin1II	CATG	2 cut(s)	23, 668
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	611
HpaII	CCGG	5 cut(s)	85, 131, 194, 207, 806
HphI	GGTGA	3 cut(s)	145, 568, 847
Hpy166II	GTNNAC	4 cut(s)	507, 521, 775, 852
Hpy188I	TCNGA	5 cut(s)	63, 202, 358, 675, 734
Hpy188III	TCNNGA	2 cut(s)	91, 346
Hpy8I	GTNNAC	4 cut(s)	507, 521, 775, 852
HpyAV	CCTTC	8 cut(s)	54, 103, 130, 343, 577, 639, 763, 775
HpyCH4III	ACNGT	5 cut(s)	77, 418, 511, 580, 856
HpyCH4V	TGCA	2 cut(s)	447, 793
HpyF10VI	GCNNNNNNNGC	8 cut(s)	179, 253, 278, 287, 610, 799, 818, 890
HpyF3I	CTNAG	3 cut(s)	60, 267, 885
Hsp92I	GRCGYC	2 cut(s)	296, 800
Hsp92II	CATG	2 cut(s)	23, 668
HspAI	GCGC	1 cut(s)	604
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	573, 661
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	4 cut(s)	265, 824, 947, 950
MaeI	CTAG	2 cut(s)	843, 894
MaeIII	GTNAC	3 cut(s)	77, 796, 835
MalI	GATC	2 cut(s)	575, 663
MboI	GATC	2 cut(s)	573, 661
MboII	GAAGA	6 cut(s)	17, 20, 525, 545, 627, 701
MhlI	GDGCHC	3 cut(s)	19, 333, 345
MluCI	AATT	3 cut(s)	336, 434, 442
MlyI	GAGTC	2 cut(s)	516, 536
MmeI	TCCRAC	2 cut(s)	519, 639
MroNI	GCCGGC	1 cut(s)	193
MroXI	GAANNNNTTC	2 cut(s)	43, 215
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	2 cut(s)	905, 941
MspI	CCGG	5 cut(s)	85, 131, 194, 207, 806
MspR9I	CCNGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	8 cut(s)	179, 253, 278, 287, 610, 799, 818, 890
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	573, 661
NgoMIV	GCCGGC	1 cut(s)	193
NheI	GCTAGC	1 cut(s)	893
NlaIII	CATG	2 cut(s)	23, 668
NmeAIII	GCCGAG	2 cut(s)	202, 737
NmuCI	GTSAC	3 cut(s)	77, 796, 835
NsbI	TGCGCA	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PdiI	GCCGGC	1 cut(s)	195
PdmI	GAANNNNTTC	2 cut(s)	43, 215
PfeI	GAWTC	9 cut(s)	39, 185, 203, 283, 359, 676, 700, 735, 829
PflFI	GACNNNGTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	206
PkrI	GCNGC	7 cut(s)	175, 255, 280, 726, 814, 937, 940
PleI	GAGTC	2 cut(s)	516, 536
PpsI	GAGTC	2 cut(s)	516, 536
PsiI	TTATAA	1 cut(s)	305
Psp124BI	GAGCTC	3 cut(s)	19, 333, 345
PspPI	GGNCC	2 cut(s)	288, 319
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PstNI	CAGNNNCTG	1 cut(s)	941
PsyI	GACNNNGTC	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	941
SacI	GAGCTC	3 cut(s)	19, 333, 345
SalI	GTCGAC	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	7 cut(s)	174, 254, 279, 725, 813, 936, 939
Sau3AI	GATC	2 cut(s)	573, 661
Sau96I	GGNCC	2 cut(s)	288, 319
SchI	GAGTC	2 cut(s)	516, 536
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	3 cut(s)	19, 333, 345
SfcI	CTRYAG	1 cut(s)	417
SgrAI	CRCCGGYG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	336, 434, 442
SsiI	CCGC	7 cut(s)	158, 174, 247, 278, 724, 905, 915
SspMI	CTAG	2 cut(s)	843, 894
SstI	GAGCTC	3 cut(s)	19, 333, 345
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	5 cut(s)	77, 418, 511, 580, 856
TaqI	TCGA	8 cut(s)	92, 104, 333, 467, 506, 638, 679, 703
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	336, 434, 442
TauI	GCSGC	3 cut(s)	176, 281, 727
TfiI	GAWTC	9 cut(s)	39, 185, 203, 283, 359, 676, 700, 735, 829
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	394, 421
TseFI	GTSAC	3 cut(s)	77, 796, 835
TseI	GCWGC	4 cut(s)	253, 812, 935, 938
Tsp45I	GTSAC	3 cut(s)	77, 796, 835
TspRI	CASTG	2 cut(s)	394, 421
Tth111I	GACNNNGTC	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	506, 851
XmnI	GAANNNNTTC	2 cut(s)	43, 215
XspI	CTAG	2 cut(s)	843, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.