Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Forward (+)

62254036 .. 62254871

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG419200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAAGAAGACCGAGCTCATGTCGTAAAAGCTCTTGGAATCCCTTCGCTCACTTCGTCTCAGAACCTACTCTACTTTCACTTCCGGCTCTCGATTTTCAGGTCGAGGAAGGTCTCGCTGACCCTGTCGCCGGTGAAGGAAAGGACGGGGATGGTGGCGCAGCCTCATTTGGCTGAGGCCGTGGCGGCGATTCGGGCCTTGGCGTCTGTTATAAGTTCCAGCGAGGCCCTGATGGAGCTCGAAATTGAGCTCAAGAAGGCTTCTGATTCCCTAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

93

Amino Acids

10.22

Weight (kDa)

9.22

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AciI	CCGC	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	130
AluBI	AGCT	4 cut(s)	17, 32, 238, 250
AluI	AGCT	4 cut(s)	17, 32, 238, 250
Alw21I	GWGCWC	3 cut(s)	19, 240, 252
Alw26I	GTCTC	2 cut(s)	63, 118
AoxI	GGCC	3 cut(s)	177, 195, 225
ApeKI	GCWGC	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	195, 226
AsuHPI	GGTGA	1 cut(s)	145
BanII	GRGCYC	3 cut(s)	19, 240, 252
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	3 cut(s)	19, 240, 252
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	145, 226
BceAI	ACGGC	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	63, 118
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	161, 186
BlsI	GCNGC	2 cut(s)	162, 187
BmgT120I	GGNCC	2 cut(s)	195, 226
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	180, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	180, 198
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	74, 165
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	3 cut(s)	179, 197, 227
BsiHKAI	GWGCWC	3 cut(s)	19, 240, 252
BsiSI	CCGG	2 cut(s)	85, 131
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	63, 118
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	179, 197, 227
Bso31I	GGTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	19, 240, 252
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	3 cut(s)	179, 197, 227
BspCNI	CTCAG	2 cut(s)	73, 166
BspTNI	GGTCTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	180, 198
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	60, 174
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	63, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 194
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	179, 197, 227
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	195, 226
CseI	GACGC	1 cut(s)	192
CviAII	CATG	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	60, 174
Ecl136II	GAGCTC	3 cut(s)	17, 238, 250
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	3 cut(s)	19, 240, 252
Eco31I	GGTCTC	1 cut(s)	118
Eco53kI	GAGCTC	3 cut(s)	17, 238, 250
EcoICRI	GAGCTC	3 cut(s)	17, 238, 250
EcoO109I	RGGNCCY	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	3 cut(s)	19, 240, 252
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	1 cut(s)	23
FaiI	YATR	2 cut(s)	21, 212
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	161, 186
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	3 cut(s)	19, 240, 252
Fsp4HI	GCNGC	2 cut(s)	161, 186
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	161, 186
HaeIII	GGCC	3 cut(s)	179, 197, 227
HapII	CCGG	2 cut(s)	85, 131
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	3 cut(s)	39, 190, 266
HpaII	CCGG	2 cut(s)	85, 131
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	63, 265
Hpy188III	TCNNGA	2 cut(s)	91, 253
HpyAV	CCTTC	4 cut(s)	54, 103, 130, 250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 194
HpyF3I	CTNAG	2 cut(s)	60, 174
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	6 cut(s)	85, 98, 137, 144, 232, 242
Lsp1109I	GCAGC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	17, 20
MhlI	GDGCHC	3 cut(s)	19, 240, 252
MluCI	AATT	1 cut(s)	243
MnlI	CCTC	4 cut(s)	99, 169, 174, 217
MroXI	GAANNNNTTC	1 cut(s)	43
MspI	CCGG	2 cut(s)	85, 131
MwoI	GCNNNNNNNGC	2 cut(s)	185, 194
NlaIII	CATG	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	39, 190, 266
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	162, 187
PsiI	TTATAA	1 cut(s)	212
Psp124BI	GAGCTC	3 cut(s)	19, 240, 252
PspPI	GGNCC	2 cut(s)	195, 226
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PsyI	GACNNNGTC	1 cut(s)	124
SacI	GAGCTC	3 cut(s)	19, 240, 252
SatI	GCNGC	2 cut(s)	161, 186
Sau96I	GGNCC	2 cut(s)	195, 226
SduI	GDGCHC	3 cut(s)	19, 240, 252
SetI	ASST	8 cut(s)	19, 34, 69, 104, 114, 240, 252, 279
SgrAI	CRCCGGYG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	185
SstI	GAGCTC	3 cut(s)	19, 240, 252
StyI	CCWWGG	1 cut(s)	198
TaqI	TCGA	3 cut(s)	92, 104, 240
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	243
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	3 cut(s)	39, 190, 266
TseI	GCWGC	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.