Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Forward (+)

56612492 .. 56612671

Gene Structure 180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG420900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGGCGGAAGCCCCGACGAGCAGGGGTCGGTTTTCGCCACCGAGGTTGAGCCCAAGCCGGCTTCTGATTCCGGGAAGCCGTTCAGCGTCATCGTGGAGTTTAATAACTGGCGGAAGCAGCCTGATTTGGCTGAGGCCGTGGCGGCGATTCGGGCCTTGGTGTCTGTTATAAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B LOR

Protein Analysis

59

Amino Acids

6.31

Weight (kDa)

4.81

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AciI	CCGC	3 cut(s)	6, 112, 143
AoxI	GGCC	2 cut(s)	135, 153
ApeKI	GCWGC	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	2 cut(s)	64, 122
BcnI	CCSGG	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	119, 144
BlsI	GCNGC	2 cut(s)	120, 145
Bme1390I	CCNGG	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	42, 138, 156
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	113
BseDI	CCNNGG	3 cut(s)	42, 138, 156
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	130
BshFI	GGCC	2 cut(s)	137, 155
BsiSI	CCGG	2 cut(s)	59, 72
BsnI	GGCC	2 cut(s)	137, 155
Bsp1286I	GDGCHC	1 cut(s)	54
BspACI	CCGC	3 cut(s)	6, 112, 143
BspANI	GGCC	2 cut(s)	137, 155
BspCNI	CTCAG	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	42, 138, 156
BssT1I	CCWWGG	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 143, 152
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	137, 155
BtgI	CCRYGG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	1 cut(s)	76
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
DdeI	CTNAG	1 cut(s)	132
EciI	GGCGGA	2 cut(s)	21, 127
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	156
FaiI	YATR	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	119, 144
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	119, 144
GluI	GCNGC	2 cut(s)	119, 144
HaeIII	GGCC	2 cut(s)	137, 155
HapII	CCGG	2 cut(s)	59, 72
HgaI	GACGC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	68, 148
HpaII	CCGG	2 cut(s)	59, 72
Hpy188I	TCNGA	2 cut(s)	67, 179
Hpy99I	CGWCG	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 143, 152
HpyF3I	CTNAG	1 cut(s)	132
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	8, 72, 85, 94, 135
Lsp1109I	GCAGC	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	37, 127
MroNI	GCCGGC	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	1 cut(s)	102
MspI	CCGG	2 cut(s)	59, 72
MspR9I	CCNGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	118, 143, 152
NaeI	GCCGGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	58
PdiI	GCCGGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	68, 148
PfoI	TCCNGGA	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	120, 145
PsiI	TTATAA	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	119, 144
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	1 cut(s)	48
SsiI	CCGC	3 cut(s)	6, 112, 143
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	156
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	68, 148
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.