Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036674.1

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Reverse (-)

2487 .. 3200

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgactctcagtgacagggtgtttgtacctcactcagttgatcctgttcagcgcgtttcaggtgggatcatacttgcaccggaaggcatcaatggcagcatatgtgggagcagagagtcggtggagaaagttctggagttcattcaaagtgatgaccgcctaagggggctgagaagattggagtcacgtgtgagtccagaggatgaagctattcatcatggacacagtagcagttctcctttggtcaagttgaagaaggagattgttgctctgggcatgcctgctgtatcgcctactgaaaaggttggaaagtatgtgagtccaagggaatggaatgaactgattagtgatccagatacggtgagtaatgtctctggtattcttaatgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

130

Amino Acids

14.14

Weight (kDa)

5.79

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	3 cut(s)	35, 74, 344
AcvI	CACGTG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	146, 253
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	3 cut(s)	35, 74, 344
ApeKI	GCWGC	1 cut(s)	96
ArsI	GACNNNNNNTTYG	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	161
BbrPI	CACGTG	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	376
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	22, 48, 161
BseXI	GCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	40, 66, 349
BspACI	CCGC	1 cut(s)	157
BspCNI	CTCAG	3 cut(s)	21, 47, 162
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	3 cut(s)	35, 74, 344
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	3 cut(s)	40, 66, 349
BssT1I	CCWWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	227, 361
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	278, 282
BstDEI	CTNAG	4 cut(s)	8, 34, 161, 170
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	43, 69, 352
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	3 cut(s)	40, 66, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	280
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	330
Bsu36I	CCTNAGG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	278, 282
CfoI	GCGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	218, 277
CviJI	RGCY	2 cut(s)	169, 209
CviKI_1	RGCY	2 cut(s)	169, 209
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	4 cut(s)	8, 34, 161, 170
DpnI	GATC	3 cut(s)	42, 68, 351
DpnII	GATC	3 cut(s)	40, 66, 349
Eco130I	CCWWGG	1 cut(s)	323
Eco72I	CACGTG	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	2 cut(s)	221, 280
FaiI	YATR	6 cut(s)	71, 101, 103, 219, 278, 315
FatI	CATG	2 cut(s)	217, 276
FauNDI	CATATG	1 cut(s)	101
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	97
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	155
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	221, 280
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	5 cut(s)	4, 116, 182, 193, 319
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	3 cut(s)	134, 197, 353
HpyAV	CCTTC	2 cut(s)	77, 250
HpyCH4III	ACNGT	2 cut(s)	227, 361
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	93
HpyF3I	CTNAG	4 cut(s)	8, 34, 161, 170
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	221, 280
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	40, 66, 349
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	9 cut(s)	45, 57, 93, 119, 210, 257, 294, 360, 366
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	11, 183
MalI	GATC	3 cut(s)	42, 68, 351
MboI	GATC	3 cut(s)	40, 66, 349
MboII	GAAGA	2 cut(s)	186, 265
MlyI	GAGTC	4 cut(s)	125, 191, 202, 328
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	2 cut(s)	39, 193
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	384
MspI	CCGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	93
NdeI	CATATG	1 cut(s)	101
NdeII	GATC	3 cut(s)	40, 66, 349
NlaIII	CATG	2 cut(s)	221, 280
NmuCI	GTSAC	2 cut(s)	11, 183
NspI	RCATGY	1 cut(s)	280
PaeI	GCATGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	4 cut(s)	124, 190, 201, 327
PmaCI	CACGTG	1 cut(s)	188
PmlI	CACGTG	1 cut(s)	188
PpsI	GAGTC	4 cut(s)	124, 190, 201, 327
Ppu21I	YACGTR	1 cut(s)	188
PspCI	CACGTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	3 cut(s)	40, 66, 349
SchI	GAGTC	4 cut(s)	125, 191, 202, 328
SetI	ASST	5 cut(s)	31, 64, 190, 211, 306
SfaNI	GCATC	1 cut(s)	96
SphI	GCATGC	1 cut(s)	280
SsiI	CCGC	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	227, 361
TaiI	ACGT	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	2 cut(s)	11, 183
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	2 cut(s)	11, 183
TspDTI	ATGAA	4 cut(s)	130, 203, 219, 351
TspRI	CASTG	1 cut(s)	16
XceI	RCATGY	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.