Rh7AG421000

GDP-mannose transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
56613178 .. 56613629
452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG421000.1

Sequence Viewer

Length: 234 bp
ATGTCGTCTGATTTCAAGTTAGAGGGAGTTAAAGGCCATGAAATTGAGGACCCAGAAGTTGGTTCTCCAAATGGAATACATAATATTCTTGCAGGTCGAAGAACTATGACTCTCAGTGACAGCGCGTTTCAGGTGGGATCATACCTGCACCGGAAGGCATCAATGGCAGCATATGTGGGAGCAGAGAGTTGGTGGAGAAAGTTCTGGAGTTCATTCAAAGTGATGACCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.59

Weight (kDa)

8.12

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 83, 153
AccB7I CCANNNNNTGG 1 cut(s) 59
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 2 cut(s) 16, 217
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 49
AvaII GGWCC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 179
BfuAI ACCTGC 2 cut(s) 83, 153
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 51
BspMI ACCTGC 2 cut(s) 83, 153
BspPI GGATC 1 cut(s) 145
BssMI GATC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 113
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 140
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 121
BveI ACCTGC 2 cut(s) 83, 153
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 1 cut(s) 38
CviJI RGCY 1 cut(s) 36
CviKI_1 RGCY 1 cut(s) 36
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 49
FaeI CATG 1 cut(s) 41
FaiI YATR 6 cut(s) 39, 81, 107, 142, 172, 174
FatI CATG 1 cut(s) 37
FauNDI CATATG 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 1 cut(s) 36
HapII CCGG 1 cut(s) 151
HhaI GCGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 92, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 6 cut(s) 66, 78, 116, 158, 164, 190
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 1 cut(s) 111
MluCI AATT 1 cut(s) 42
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 2 cut(s) 16, 40
MseI TTAA 1 cut(s) 30
MspI CCGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeI CATATG 1 cut(s) 172
NdeII GATC 1 cut(s) 137
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 103
SetI ASST 3 cut(s) 97, 135, 147
SfaNI GCATC 1 cut(s) 167
SinI GGWCC 1 cut(s) 49
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 228
SspI AATATT 1 cut(s) 85
TaqI TCGA 1 cut(s) 97
TasI AATT 1 cut(s) 42
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 54, 201
TspRI CASTG 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.