Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011609

Physical Location & Seq

Genomic Coordinates Forward (+)

58137847 .. 58157495

Gene Structure 19649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG413500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCGTCTGATTTCAAGTTAGAGGGAGTTAAAGGCCATGAAATTGAGGACCCAGAAGTTGGTTCTCCAAATGGAATACATAATATTCTTGCAGGTCGAAGAACTTTGACTCTCAGTGACAGCGCGTTTCAGGTGGGATCATACTTGCACCGGAAGGCATCAATGGCAGCATATGTGGGAGCAGAGAGTCGGTGGAGAAAGGTCAAATTGAAGGAGGAGATTGTTGCTCTGGGCATGCCTGCTGTATCGCCTACTGAAAAGGTTGGAAAGTACGTGAGTCCAAGGGAATGGAATGAACTGATTAGTGATCCAGATACGGTTGCAGAAAACAAAAGAAGTGTTGCTGGGTTTCGGGTTTCAGTGATTGATTTGGAGTGGTTGAAGAATTGGTTCGATGTGGTGGGGATGATGTTCGTATTGCTCACTGGAAATCTGATTGTCAGAACACCAATATCGCATAGGGTCCTTTTCCTAAAGCAAGGAACTGCCCATGAAGCTTATGTGGAATATGTCTTCGCTATAGTTGTAGTGGAATCAAAGGCTGGGGATACAACACACTGGTGCTATCAGATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

192

Amino Acids

21.48

Weight (kDa)

6.6

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011609)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g06630
rosa_chinensis	RchiOBHm_Chr2g0141441 RchiOBHm_Chr7g0231431
rosa_multiflora	Rmu_sc0003396.1_g000035 Rmu_sc0036674.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072780 Rroxscaffold_3G00229320
rosa_rugosa	Rorug02G0368000 Rorug02G0368100
rosa_samantha	Rh2AG419200 Rh2AG419300 Rh2BG428700 Rh2CG405900 Rh7AG420900 Rh7AG421000 Rh7CG441000 Rh7CG441100 Rh7DG413500
rosa_wichuraiana	Rw0G019740 Rw2G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	1 cut(s)	125
AclWI	GGATC	2 cut(s)	145, 302
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	16, 211, 382
AleI	CACNNNNGTG	1 cut(s)	559
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
AlwI	GGATC	2 cut(s)	145, 302
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	49, 463
AvaII	GGWCC	2 cut(s)	49, 463
BbsI	GAAGAC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	541
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	49, 463
BmgT120I	GGNCC	2 cut(s)	49, 463
BmiI	GGNNCC	2 cut(s)	51, 464
BmsI	GCATC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	505
BsaAI	YACGTR	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	430, 563
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	430, 563
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	179
BseYI	CCCAGC	2 cut(s)	344, 542
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	137, 307
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	51, 464
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	145, 302
BsrI	ACTGG	2 cut(s)	430, 563
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	137, 307
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	319
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	236, 240
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	140, 310
BstMBI	GATC	2 cut(s)	137, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 494
BstNSI	RCATGY	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	4 cut(s)	121, 366, 423, 556
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	236, 240
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	49, 463
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	3 cut(s)	38, 235, 491
CviJI	RGCY	3 cut(s)	36, 497, 542
CviKI_1	RGCY	3 cut(s)	36, 497, 542
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	2 cut(s)	139, 309
DpnII	GATC	2 cut(s)	137, 307
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	49, 463
EcoO109I	RGGNCCY	2 cut(s)	49, 463
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	3 cut(s)	41, 238, 494
FatI	CATG	3 cut(s)	37, 234, 490
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	168
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	168
GsaI	CCCAGC	2 cut(s)	348, 546
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	41, 238, 494
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	4 cut(s)	109, 187, 277, 533
HpaII	CCGG	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	10, 435, 443, 570
Hpy188III	TCNNGA	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	148, 205
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	92, 148, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 494
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	41, 238, 494
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	137, 307
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	1 cut(s)	167
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	2 cut(s)	139, 309
MboI	GATC	2 cut(s)	137, 307
MboII	GAAGA	3 cut(s)	111, 394, 505
MluCI	AATT	3 cut(s)	42, 206, 385
MlyI	GAGTC	3 cut(s)	103, 196, 286
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	16, 40, 208
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	559
MspI	CCGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	164, 494
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	2 cut(s)	137, 307
NlaIII	CATG	3 cut(s)	41, 238, 494
NlaIV	GGNNCC	2 cut(s)	51, 464
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	559
PaeI	GCATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	533
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	3 cut(s)	103, 195, 285
PpsI	GAGTC	3 cut(s)	103, 195, 285
Ppu21I	YACGTR	1 cut(s)	274
PpuMI	RGGWCCY	2 cut(s)	49, 463
Psp5II	RGGWCCY	2 cut(s)	49, 463
PspFI	CCCAGC	2 cut(s)	344, 542
PspN4I	GGNNCC	2 cut(s)	51, 464
PspPI	GGNCC	2 cut(s)	49, 463
PspPPI	RGGWCCY	2 cut(s)	49, 463
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	137, 307
Sau96I	GGNCC	2 cut(s)	49, 463
SchI	GAGTC	3 cut(s)	103, 196, 286
SetI	ASST	6 cut(s)	97, 135, 204, 264, 276, 499
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	2 cut(s)	49, 463
SmiMI	CAYNNNNRTG	1 cut(s)	559
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	3 cut(s)	42, 206, 385
SspI	AATATT	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	97, 393
TasI	AATT	3 cut(s)	42, 206, 385
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	4 cut(s)	121, 366, 430, 563
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	54, 309, 507
TspRI	CASTG	4 cut(s)	121, 366, 430, 563
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	49, 463
XceI	RCATGY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.