Rmu_sc0003458.1_g000017

beta-xylosidase alpha-L-arabinofuranosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003458.1
OG0010177
Physical Location & Seq
Reverse (-)
80098 .. 81683
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1041 bp
atggctaccattgtcagtttgctcgtttattttgccattgcctcttctttcttcgtttcttctaatgctggaagaaaacttctcgactctacaagtgtttccaccaatggagccactaactttaccattgtgtgtgatccgtcaaggtactccaacctcggcctgaacatatctgactttgccttctgcgactcagccttgccgtacgatgctagggtcaaagacttggtggataggatgaccttggcagagaaagtgcagcagctaggaaacaaagcagctggggtgcctagactaggcttgcccaagtacgagtggtggtctgaggcactccacggtgtatccaacgtcggtccgggtacgtactttgatgatgttgttcccggtgcaacaagcttcccccctgtcattctcaccgccgcgtcattcaacgagtccttgtggaaggagattggtcaggttgtttcaacagaagcaagagccatgtacaacctaggaagggctggattgacatattggagtcccaatataaatgtagtgagggatccaaggtggggaagagccacagagacgcccggtgaagacccttatgttgttggagcttatgctataaactatgtccgaggcttgcaagatgttaagggtacagagaattttgcagacttgaactctaggcctcttaaggtctcctcttgctgcaagcactatgctgcctatgatgttgataactggcttggtgtggatcgttaccattttgatgcccaggttacggagcaagatatgtcagagactttccttaaaccatttgagatgtgtgttaaagatggtgatgttagtagtgtaatgtgctcctacaacaggattaatggaataccagcttgtgctgatacaaagctcttgaaagataccattagaggagaatgggaccttcatggatacattgtctcagattgtgactctctagaagtaatggtgaatggccataaatggcttggggacactggagtggaagcttctgcacaagcattaaaagcaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

346

Amino Acids

37.89

Weight (kDa)

4.96

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_3 PF00933 129 - 346 9.4e-32 Glycosyl hydrolase family 3 N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1025
AccB1I GGYRCC 1 cut(s) 286
AccII CGCG 1 cut(s) 422
AciI CCGC 2 cut(s) 417, 420
AclWI GGATC 4 cut(s) 131, 539, 552, 750
AcoI YGGCCR 1 cut(s) 979
AcsI RAATTY 1 cut(s) 652
AcyI GRCGYC 1 cut(s) 572
AfaI GTAC 7 cut(s) 149, 206, 311, 361, 365, 488, 646
AfiI CCNNNNNNNGG 5 cut(s) 296, 499, 554, 769, 858
AflII CTTAAG 1 cut(s) 680
AgsI TTSAA 4 cut(s) 430, 468, 667, 901
AjnI CCWGG 1 cut(s) 762
AleI CACNNNNGTG 1 cut(s) 1004
AluBI AGCT 7 cut(s) 265, 281, 396, 602, 878, 895, 1013
AluI AGCT 7 cut(s) 265, 281, 396, 602, 878, 895, 1013
Alw21I GWGCWC 1 cut(s) 851
Alw26I GTCTC 4 cut(s) 563, 691, 782, 949
AlwI GGATC 4 cut(s) 131, 539, 552, 750
AoxI GGCC 3 cut(s) 160, 674, 979
ApeKI GCWGC 5 cut(s) 259, 262, 278, 696, 710
ApoI RAATTY 1 cut(s) 652
AseI ATTAAT 1 cut(s) 864
AspA2I CCTAGG 1 cut(s) 493
AspS9I GGNCC 2 cut(s) 353, 925
AsuC2I CCSGG 3 cut(s) 357, 384, 576
AsuHPI GGTGA 4 cut(s) 406, 590, 839, 985
AvaII GGWCC 2 cut(s) 353, 925
AvrII CCTAGG 1 cut(s) 493
BalI TGGCCA 1 cut(s) 981
BamHI GGATCC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 851
BbvI GCAGC 5 cut(s) 271, 274, 290, 683, 697
BccI CCATC 1 cut(s) 818
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 764
BciVI GTATCC 2 cut(s) 352, 929
BcnI CCSGG 3 cut(s) 357, 384, 576
BcoDI GTCTC 4 cut(s) 563, 691, 782, 949
BfaI CTAG 7 cut(s) 213, 266, 291, 296, 494, 672, 962
BfrI CTTAAG 1 cut(s) 680
BfuAI ACCTGC 1 cut(s) 1025
BfuI GTATCC 2 cut(s) 352, 929
BisI GCNGC 6 cut(s) 260, 263, 279, 420, 697, 711
BlnI CCTAGG 1 cut(s) 493
BlsI GCNGC 6 cut(s) 261, 264, 280, 421, 698, 712
Bme1390I CCNGG 4 cut(s) 357, 384, 576, 764
Bme18I GGWCC 2 cut(s) 353, 925
BmgT120I GGNCC 2 cut(s) 353, 925
BmiI GGNNCC 4 cut(s) 112, 288, 546, 926
BmrFI CCNGG 4 cut(s) 357, 384, 576, 764
BmsI GCATC 2 cut(s) 199, 748
BpiI GAAGAC 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 1023
BpuMI CCSGG 3 cut(s) 357, 384, 576
BsaAI YACGTR 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 572
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 7 cut(s) 157, 243, 334, 493, 548, 622, 762
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 499, 554, 769, 858
Bse1I ACTGG 2 cut(s) 734, 1006
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 764
BseDI CCNNGG 7 cut(s) 157, 243, 334, 493, 548, 622, 762
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 5 cut(s) 296, 499, 554, 769, 858
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 3 cut(s) 207, 315, 960
BseNI ACTGG 2 cut(s) 734, 1006
BseRI GAGGAG 2 cut(s) 679, 930
BseXI GCAGC 5 cut(s) 271, 274, 290, 683, 697
BseYI CCCAGC 1 cut(s) 281
BsgI GTGCAG 2 cut(s) 278, 1002
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 3 cut(s) 162, 676, 981
BshNI GGYRCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 851
BsiSI CCGG 3 cut(s) 356, 384, 576
BsiWI CGTACG 1 cut(s) 204
BslFI GGGAC 3 cut(s) 507, 938, 1010
BslI CCNNNNNNNGG 5 cut(s) 296, 499, 554, 769, 858
BsmAI GTCTC 4 cut(s) 563, 691, 782, 949
BsmBI CGTCTC 1 cut(s) 563
BsmFI GGGAC 3 cut(s) 507, 938, 1010
BsnI GGCC 3 cut(s) 162, 676, 981
Bso31I GGTCTC 1 cut(s) 691
Bsp1286I GDGCHC 1 cut(s) 851
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 3 cut(s) 136, 544, 742
BspACI CCGC 2 cut(s) 417, 420
BspANI GGCC 3 cut(s) 162, 676, 981
BspCNI CTCAG 3 cut(s) 206, 316, 959
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 4 cut(s) 112, 288, 546, 926
BspMI ACCTGC 1 cut(s) 1025
BspPI GGATC 4 cut(s) 131, 539, 552, 750
BspQI GCTCTTC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 286
BspTI CTTAAG 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 36
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 2 cut(s) 734, 1006
BssECI CCNNGG 7 cut(s) 157, 243, 334, 493, 548, 622, 762
BssMI GATC 3 cut(s) 136, 544, 742
BssNI GRCGYC 1 cut(s) 572
BssT1I CCWWGG 3 cut(s) 243, 493, 548
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 2 cut(s) 49, 553
BstACI GRCGYC 1 cut(s) 572
BstAFI CTTAAG 1 cut(s) 680
BstAUI TGTACA 1 cut(s) 486
BstBAI YACGTR 1 cut(s) 363
BstC8I GCNNGC 3 cut(s) 302, 629, 701
BstDEI CTNAG 3 cut(s) 193, 324, 946
BstDSI CCRYGG 1 cut(s) 334
BstENI CCTNNNNNAGG 2 cut(s) 294, 856
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 422
BstKTI GATC 3 cut(s) 139, 547, 745
BstMAI GTCTC 4 cut(s) 563, 691, 782, 949
BstMBI GATC 3 cut(s) 136, 544, 742
BstMWI GCNNNNNNNGC 1 cut(s) 1031
BstNI CCWGG 1 cut(s) 764
BstSCI CCNGG 4 cut(s) 355, 382, 574, 762
BstSNI TACGTA 1 cut(s) 363
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 5 cut(s) 271, 274, 290, 683, 697
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuI GTATCC 2 cut(s) 352, 929
BsuRI GGCC 3 cut(s) 162, 676, 981
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 999
BveI ACCTGC 1 cut(s) 1025
Cac8I GCNNGC 3 cut(s) 302, 629, 701
Cfr13I GGNCC 2 cut(s) 353, 925
CpoI CGGWCCG 1 cut(s) 353
CseI GACGC 2 cut(s) 411, 580
Csp6I GTAC 7 cut(s) 148, 205, 310, 360, 364, 487, 645
CspI CGGWCCG 1 cut(s) 353
CviAII CATG 2 cut(s) 484, 932
CviQI GTAC 7 cut(s) 148, 205, 310, 360, 364, 487, 645
DdeI CTNAG 3 cut(s) 193, 324, 946
DpnI GATC 3 cut(s) 138, 546, 744
DpnII GATC 3 cut(s) 136, 544, 742
EaeI YGGCCR 1 cut(s) 979
Eam1104I CTCTTC 2 cut(s) 49, 553
EarI CTCTTC 2 cut(s) 49, 553
Eco105I TACGTA 1 cut(s) 363
Eco130I CCWWGG 3 cut(s) 243, 493, 548
Eco147I AGGCCT 1 cut(s) 676
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 353, 925
EcoNI CCTNNNNNAGG 2 cut(s) 294, 856
EcoO109I RGGNCCY 1 cut(s) 925
EcoRII CCWGG 1 cut(s) 762
EcoT14I CCWWGG 3 cut(s) 243, 493, 548
ErhI CCWWGG 3 cut(s) 243, 493, 548
Esp3I CGTCTC 1 cut(s) 563
FaeI CATG 2 cut(s) 487, 935
FaqI GGGAC 3 cut(s) 507, 938, 1010
FatI CATG 2 cut(s) 483, 931
Fnu4HI GCNGC 6 cut(s) 260, 263, 279, 420, 697, 711
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 6 cut(s) 260, 263, 279, 420, 697, 711
FspBI CTAG 7 cut(s) 213, 266, 291, 296, 494, 672, 962
GluI GCNGC 6 cut(s) 260, 263, 279, 420, 697, 711
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 1023
HaeIII GGCC 3 cut(s) 162, 676, 981
HapII CCGG 3 cut(s) 356, 384, 576
HgaI GACGC 2 cut(s) 411, 580
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 2 cut(s) 487, 935
HindIII AAGCTT 2 cut(s) 394, 1011
HinfI GANTC 5 cut(s) 86, 191, 434, 520, 956
HpaII CCGG 3 cut(s) 356, 384, 576
HphI GGTGA 4 cut(s) 406, 590, 839, 985
Hpy188I TCNGA 5 cut(s) 175, 325, 623, 787, 949
Hpy188III TCNNGA 3 cut(s) 83, 898, 962
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 4 cut(s) 193, 439, 492, 938
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 2 cut(s) 348, 362
HpyCH4V TGCA 6 cut(s) 259, 389, 631, 659, 699, 1019
HpyF10VI GCNNNNNNNGC 1 cut(s) 1031
HpyF3I CTNAG 3 cut(s) 193, 324, 946
HpySE526I ACGT 2 cut(s) 348, 362
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 2 cut(s) 487, 935
Kzo9I GATC 3 cut(s) 136, 544, 742
LguI GCTCTTC 1 cut(s) 553
LmnI GCTCC 4 cut(s) 110, 599, 772, 854
Lsp1109I GCAGC 5 cut(s) 271, 274, 290, 683, 697
LweI GCATC 2 cut(s) 199, 748
MaeI CTAG 7 cut(s) 213, 266, 291, 296, 494, 672, 962
MaeII ACGT 2 cut(s) 348, 362
MaeIII GTNAC 3 cut(s) 746, 766, 953
MalI GATC 3 cut(s) 138, 546, 744
MboI GATC 3 cut(s) 136, 544, 742
MboII GAAGA 6 cut(s) 36, 43, 51, 84, 570, 593
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 851
MlsI TGGCCA 1 cut(s) 981
MluCI AATT 1 cut(s) 652
MluNI TGGCCA 1 cut(s) 981
MlyI GAGTC 5 cut(s) 80, 185, 443, 529, 950
MmeI TCCRAC 3 cut(s) 177, 369, 577
MnlI CCTC 8 cut(s) 52, 167, 319, 534, 617, 687, 700, 908
Mox20I TGGCCA 1 cut(s) 981
MscI TGGCCA 1 cut(s) 981
MseI TTAA 7 cut(s) 639, 681, 798, 819, 864, 1028, 1039
MslI CAYNNNNRTG 2 cut(s) 756, 1004
Msp20I TGGCCA 1 cut(s) 981
MspA1I CMGCKG 1 cut(s) 281
MspCI CTTAAG 1 cut(s) 680
MspI CCGG 3 cut(s) 356, 384, 576
MspR9I CCNGG 4 cut(s) 357, 384, 576, 764
MvaI CCWGG 1 cut(s) 764
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 1031
NciI CCSGG 3 cut(s) 357, 384, 576
NdeII GATC 3 cut(s) 136, 544, 742
NlaIII CATG 2 cut(s) 487, 935
NlaIV GGNNCC 4 cut(s) 112, 288, 546, 926
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 953
OliI CACNNNNGTG 1 cut(s) 1004
PceI AGGCCT 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 553
Pfl23II CGTACG 1 cut(s) 204
PkrI GCNGC 6 cut(s) 261, 264, 280, 421, 698, 712
PleI GAGTC 5 cut(s) 80, 185, 442, 528, 950
PpsI GAGTC 5 cut(s) 80, 185, 442, 528, 950
Ppu21I YACGTR 1 cut(s) 363
PpuMI RGGWCCY 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 864
Psp5II RGGWCCY 1 cut(s) 925
Psp6I CCWGG 1 cut(s) 762
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 762
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 4 cut(s) 112, 288, 546, 926
PspPI GGNCC 2 cut(s) 353, 925
PspPPI RGGWCCY 1 cut(s) 925
PsuI RGATCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 7 cut(s) 149, 206, 311, 361, 365, 488, 646
RsaNI GTAC 7 cut(s) 148, 205, 310, 360, 364, 487, 645
RseI CAYNNNNRTG 2 cut(s) 756, 1004
Rsr2I CGGWCCG 1 cut(s) 353
RsrII CGGWCCG 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 553
SaqAI TTAA 7 cut(s) 639, 681, 798, 819, 864, 1028, 1039
SatI GCNGC 6 cut(s) 260, 263, 279, 420, 697, 711
Sau3AI GATC 3 cut(s) 136, 544, 742
Sau96I GGNCC 2 cut(s) 353, 925
SchI GAGTC 5 cut(s) 80, 185, 443, 529, 950
ScrFI CCNGG 4 cut(s) 357, 384, 576, 764
SduI GDGCHC 1 cut(s) 851
SfaNI GCATC 2 cut(s) 199, 748
SinI GGWCC 2 cut(s) 353, 925
SmiMI CAYNNNNRTG 2 cut(s) 756, 1004
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SnaBI TACGTA 1 cut(s) 363
Sse9I AATT 1 cut(s) 652
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 2 cut(s) 417, 420
SspMI CTAG 7 cut(s) 213, 266, 291, 296, 494, 672, 962
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 4 cut(s) 355, 382, 574, 762
StyI CCWWGG 3 cut(s) 243, 493, 548
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 2 cut(s) 351, 365
TaqI TCGA 1 cut(s) 84
TaqII GACCGA 1 cut(s) 341
TasI AATT 1 cut(s) 652
TatI WGTACW 1 cut(s) 486
TauI GCSGC 1 cut(s) 422
Tru1I TTAA 7 cut(s) 639, 681, 798, 819, 864, 1028, 1039
Tru9I TTAA 7 cut(s) 639, 681, 798, 819, 864, 1028, 1039
TscAI CASTG 1 cut(s) 1006
TseFI GTSAC 1 cut(s) 953
TseI GCWGC 5 cut(s) 259, 262, 278, 696, 710
Tsp45I GTSAC 1 cut(s) 953
TspDTI ATGAA 1 cut(s) 920
TspGWI ACGGA 2 cut(s) 129, 785
TspRI CASTG 1 cut(s) 1006
Vha464I CTTAAG 1 cut(s) 680
VpaK11BI GGWCC 2 cut(s) 353, 925
VspI ATTAAT 1 cut(s) 864
XagI CCTNNNNNAGG 2 cut(s) 294, 856
XapI RAATTY 1 cut(s) 652
XbaI TCTAGA 1 cut(s) 961
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
XmaJI CCTAGG 1 cut(s) 493
XspI CTAG 7 cut(s) 213, 266, 291, 296, 494, 672, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.