Rmu_sc0003470.1_g000020
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003470.1
OG0013233
Physical Location & Seq
Forward (+)
91727 .. 95306
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 852 bp
atggatgttgatcagtacttactgagaggttatacttcatctgtaactcatgagttaccaagctgtgatccagaagatgatctgcgaaaagggccatggacagttgaggaagactccattctcatggagtatatcaacactcacggcgagggccggtggaattcactggccggaaactcgggcctgaaacgaagtggcaaaagctgcagactgagatggttgaactacttgcgcccaaatgttcgacgtggaaatatcaccctccaagaacagcttctgattcttcaacttcattctcgctggggcaacaggtggtcgaagatagcggaatacttgccgggaagaacagacaatgagataaaaaactactggagaacaagagtccaaaagcaagcaaagcagctcaactgtgacgtcaacagcaagcaattccaggacgccatgcatgactactgcctcactgatcatagtaatacggcggctgctgggtcttctcactactggattgacccgaactacctgcccgaggcgtctgcaacttcgtccggctcaacggaacttcaagattgtttgaatattcccgagcctaccagtactgaattcagtgaactcaactgctatccaatgaacgggcaatattattcttcaacaaactggtcggcccagcaccctgctagcccaccccactgcccagcacccgtgcgcacacccactgcctgcagccacacacacagcgtcctcgcgccatcagcccacccgcccccatccatcgctgctgcaacagcccattcggctcgcttgcccaccaccgtagcccagccacttgaacgccggtggccagaccactcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

283

Amino Acids

31.91

Weight (kDa)

6.49

Isoelectric Point (pI)

68.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 30 - 77 6.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 33 - 90 7.1e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 83 - 126 7.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 87 - 134 4.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47190
fragaria_vesca FvH4_1g26720
malus_domestica MD09G1286900.v1.1 MD17G1279200.v1.1
prunus_persica Prupe.3G006300_v2.0.a1
pyrus_communis pycom17g27710
rosa_chinensis RchiOBHm_Chr3g0486901
rosa_laevigata RLG00000023046
rosa_multiflora Rmu_sc0000501.1_g000017 Rmu_sc0003470.1_g000020
rosa_roxburghii Rroxscaffold_6G00395370
rosa_rugosa Rorug03G0228600 Rorug03G0228700
rosa_samantha Rh3AG278000 Rh3BG313800 Rh3CG312200 Rh3DG308500
rosa_wichuraiana Rw3G024680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
Acc16I TGCGCA 1 cut(s) 704
Acc36I ACCTGC 1 cut(s) 528
AccII CGCG 1 cut(s) 743
AciI CCGC 3 cut(s) 326, 479, 758
AclWI GGATC 1 cut(s) 62
AcoI YGGCCR 2 cut(s) 168, 836
AcsI RAATTY 2 cut(s) 160, 599
AcyI GRCGYC 3 cut(s) 414, 438, 530
AfaI GTAC 2 cut(s) 17, 595
AfiI CCNNNNNNNGG 2 cut(s) 526, 629
AgsI TTSAA 6 cut(s) 223, 287, 563, 574, 648, 827
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 432
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 4 cut(s) 63, 204, 274, 403
AluI AGCT 4 cut(s) 63, 204, 274, 403
AlwI GGATC 1 cut(s) 62
AlwNI CAGNNNCTG 1 cut(s) 277
Ama87I CYCGRG 3 cut(s) 178, 524, 581
AoxI GGCC 6 cut(s) 92, 151, 168, 181, 660, 836
ApeKI GCWGC 6 cut(s) 204, 400, 482, 720, 773, 776
ApoI RAATTY 2 cut(s) 160, 599
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 3 cut(s) 234, 705, 745
AspS9I GGNCC 4 cut(s) 92, 151, 181, 661
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 250
AsuNHI GCTAGC 1 cut(s) 674
AvaI CYCGRG 3 cut(s) 178, 524, 581
BalI TGGCCA 1 cut(s) 838
BbsI GAAGAC 2 cut(s) 117, 483
BbvI GCAGC 6 cut(s) 191, 412, 469, 732, 760, 763
BccI CCATC 4 cut(s) 210, 754, 772, 776
BceAI ACGGC 2 cut(s) 160, 492
BcgI CGANNNNNNTGC 4 cut(s) 502, 515, 536, 549
BciT130I CCWGG 1 cut(s) 434
BclI TGATCA 2 cut(s) 10, 463
BcnI CCSGG 1 cut(s) 339
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 2 cut(s) 205, 718
BfuAI ACCTGC 1 cut(s) 528
BglI GCCNNNNNGGC 1 cut(s) 791
BisI GCNGC 7 cut(s) 205, 401, 480, 483, 721, 774, 777
BlsI GCNGC 7 cut(s) 206, 402, 481, 484, 722, 775, 778
BmcAI AGTACT 2 cut(s) 17, 595
Bme1390I CCNGG 2 cut(s) 339, 434
BmeT110I CYCGRG 3 cut(s) 178, 524, 581
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 4 cut(s) 92, 151, 181, 661
BmrFI CCNGG 2 cut(s) 339, 434
BmtI GCTAGC 1 cut(s) 678
BpiI GAAGAC 2 cut(s) 117, 483
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 3 cut(s) 414, 438, 530
BsaJI CCNNGG 2 cut(s) 95, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 629
Bse118I RCCGGY 2 cut(s) 153, 831
Bse1I ACTGG 5 cut(s) 171, 374, 506, 591, 659
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 2 cut(s) 95, 525
BseGI GGATG 2 cut(s) 10, 764
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 526, 629
BseMII CTCAG 2 cut(s) 14, 203
BseNI ACTGG 5 cut(s) 171, 374, 506, 591, 659
BseXI GCAGC 6 cut(s) 191, 412, 469, 732, 760, 763
BseYI CCCAGC 5 cut(s) 300, 485, 663, 691, 816
Bsh1236I CGCG 1 cut(s) 743
BshFI GGCC 6 cut(s) 94, 153, 170, 183, 662, 838
BsiHKCI CYCGRG 3 cut(s) 178, 524, 581
BsiSI CCGG 5 cut(s) 154, 171, 338, 546, 832
BslI CCNNNNNNNGG 2 cut(s) 526, 629
BsnI GGCC 6 cut(s) 94, 153, 170, 183, 662, 838
BsoBI CYCGRG 3 cut(s) 178, 524, 581
Bsp143I GATC 4 cut(s) 10, 67, 79, 463
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 3 cut(s) 326, 479, 758
BspANI GGCC 6 cut(s) 94, 153, 170, 183, 662, 838
BspCNI CTCAG 2 cut(s) 15, 204
BspFNI CGCG 1 cut(s) 743
BspHI TCATGA 1 cut(s) 49
BspMAI CTGCAG 2 cut(s) 209, 722
BspMI ACCTGC 1 cut(s) 528
BspOI GCTAGC 1 cut(s) 678
BspPI GGATC 1 cut(s) 62
BsrFI RCCGGY 2 cut(s) 153, 831
BsrI ACTGG 5 cut(s) 171, 374, 506, 591, 659
BssAI RCCGGY 2 cut(s) 153, 831
BssECI CCNNGG 2 cut(s) 95, 525
BssMI GATC 4 cut(s) 10, 67, 79, 463
BssNI GRCGYC 3 cut(s) 414, 438, 530
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 3 cut(s) 103, 410, 811
BstACI GRCGYC 3 cut(s) 414, 438, 530
BstAPI GCANNNNNTGC 1 cut(s) 204
BstC8I GCNNGC 6 cut(s) 393, 425, 676, 718, 796, 800
BstDEI CTNAG 2 cut(s) 23, 212
BstDSI CCRYGG 1 cut(s) 95
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 2 cut(s) 10, 764
BstFNI CGCG 1 cut(s) 743
BstHHI GCGC 3 cut(s) 234, 705, 745
BstKTI GATC 4 cut(s) 13, 70, 82, 466
BstMBI GATC 4 cut(s) 10, 67, 79, 463
BstMWI GCNNNNNNNGC 6 cut(s) 91, 204, 397, 749, 782, 791
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 337, 432
BstSFI CTRYAG 2 cut(s) 205, 718
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 6 cut(s) 191, 412, 469, 732, 760, 763
BstV2I GAAGAC 2 cut(s) 117, 483
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 6 cut(s) 94, 153, 170, 183, 662, 838
BtgI CCRYGG 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 754
BtrI CACGTC 1 cut(s) 248
BtsCI GGATG 2 cut(s) 10, 764
BtsI GCAGTG 2 cut(s) 685, 711
BtsIMutI CAGTG 5 cut(s) 164, 459, 610, 685, 711
BveI ACCTGC 1 cut(s) 528
Cac8I GCNNGC 6 cut(s) 393, 425, 676, 718, 796, 800
CaiI CAGNNNCTG 1 cut(s) 277
CciI TCATGA 1 cut(s) 49
CfoI GCGC 3 cut(s) 234, 705, 745
Cfr10I RCCGGY 2 cut(s) 153, 831
Cfr13I GGNCC 4 cut(s) 92, 151, 181, 661
CseI GACGC 3 cut(s) 446, 519, 724
Csp6I GTAC 2 cut(s) 16, 594
CviAII CATG 5 cut(s) 50, 96, 124, 442, 446
CviQI GTAC 2 cut(s) 16, 594
DdeI CTNAG 2 cut(s) 23, 212
DpnI GATC 4 cut(s) 12, 69, 81, 465
DpnII GATC 4 cut(s) 10, 67, 79, 463
EaeI YGGCCR 2 cut(s) 168, 836
Eco130I CCWWGG 1 cut(s) 95
Eco88I CYCGRG 3 cut(s) 178, 524, 581
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoRI GAATTC 2 cut(s) 160, 599
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 5 cut(s) 53, 99, 127, 445, 449
FaiI YATR 8 cut(s) 33, 51, 97, 125, 132, 443, 447, 468
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 5 cut(s) 49, 95, 123, 441, 445
FauI CCCGC 1 cut(s) 765
FbaI TGATCA 2 cut(s) 10, 463
Fnu4HI GCNGC 7 cut(s) 205, 401, 480, 483, 721, 774, 777
FokI GGATG 2 cut(s) 17, 751
Fsp4HI GCNGC 7 cut(s) 205, 401, 480, 483, 721, 774, 777
FspAI RTGCGCAY 1 cut(s) 704
FspBI CTAG 1 cut(s) 675
FspI TGCGCA 1 cut(s) 704
GlaI GCGC 3 cut(s) 233, 704, 744
GluI GCNGC 7 cut(s) 205, 401, 480, 483, 721, 774, 777
GsaI CCCAGC 5 cut(s) 304, 489, 667, 695, 820
GsuI CTGGAG 1 cut(s) 391
HaeIII GGCC 6 cut(s) 94, 153, 170, 183, 662, 838
HapII CCGG 5 cut(s) 154, 171, 338, 546, 832
HgaI GACGC 3 cut(s) 446, 519, 724
HhaI GCGC 3 cut(s) 234, 705, 745
Hin1I GRCGYC 3 cut(s) 414, 438, 530
Hin1II CATG 5 cut(s) 53, 99, 127, 445, 449
Hin6I GCGC 3 cut(s) 232, 703, 743
HinP1I GCGC 3 cut(s) 232, 703, 743
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 3 cut(s) 113, 280, 381
HpaII CCGG 5 cut(s) 154, 171, 338, 546, 832
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 418, 608
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 4 cut(s) 50, 71, 563, 581
Hpy8I GTNNAC 2 cut(s) 418, 608
Hpy99I CGWCG 1 cut(s) 249
HpyCH4III ACNGT 3 cut(s) 103, 410, 811
HpyCH4IV ACGT 2 cut(s) 247, 414
HpyCH4V TGCA 5 cut(s) 207, 445, 536, 720, 779
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 204, 397, 749, 782, 791
HpyF3I CTNAG 2 cut(s) 23, 212
HpySE526I ACGT 2 cut(s) 247, 414
Hsp92I GRCGYC 3 cut(s) 414, 438, 530
Hsp92II CATG 5 cut(s) 53, 99, 127, 445, 449
HspAI GCGC 3 cut(s) 232, 703, 743
Ksp22I TGATCA 2 cut(s) 10, 463
Kzo9I GATC 4 cut(s) 10, 67, 79, 463
Lsp1109I GCAGC 6 cut(s) 191, 412, 469, 732, 760, 763
MaeI CTAG 1 cut(s) 675
MaeII ACGT 2 cut(s) 247, 414
MaeIII GTNAC 3 cut(s) 43, 54, 410
MalI GATC 4 cut(s) 12, 69, 81, 465
MboI GATC 4 cut(s) 10, 67, 79, 463
MboII GAAGA 7 cut(s) 86, 122, 275, 331, 354, 483, 636
MlsI TGGCCA 1 cut(s) 838
MluCI AATT 3 cut(s) 160, 428, 599
MluNI TGGCCA 1 cut(s) 838
MlyI GAGTC 2 cut(s) 107, 390
MnlI CCTC 7 cut(s) 20, 100, 142, 272, 467, 520, 749
Mox20I TGGCCA 1 cut(s) 838
Mph1103I ATGCAT 1 cut(s) 447
MroXI GAANNNNTTC 1 cut(s) 273
MscI TGGCCA 1 cut(s) 838
MslI CAYNNNNRTG 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 838
MspI CCGG 5 cut(s) 154, 171, 338, 546, 832
MspR9I CCNGG 2 cut(s) 339, 434
MvaI CCWGG 1 cut(s) 434
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 6 cut(s) 91, 204, 397, 749, 782, 791
NciI CCSGG 1 cut(s) 339
NcoI CCATGG 1 cut(s) 95
NdeII GATC 4 cut(s) 10, 67, 79, 463
NheI GCTAGC 1 cut(s) 674
NlaIII CATG 5 cut(s) 53, 99, 127, 445, 449
NmuCI GTSAC 1 cut(s) 410
NsbI TGCGCA 1 cut(s) 704
NsiI ATGCAT 1 cut(s) 447
PagI TCATGA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 7 cut(s) 206, 402, 481, 484, 722, 775, 778
PleI GAGTC 2 cut(s) 107, 389
PpsI GAGTC 2 cut(s) 107, 389
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 5 cut(s) 300, 485, 663, 691, 816
PspGI CCWGG 1 cut(s) 432
PspPI GGNCC 4 cut(s) 92, 151, 181, 661
PstI CTGCAG 2 cut(s) 209, 722
PstNI CAGNNNCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 17, 595
RsaNI GTAC 2 cut(s) 16, 594
RseI CAYNNNNRTG 1 cut(s) 122
SatI GCNGC 7 cut(s) 205, 401, 480, 483, 721, 774, 777
Sau3AI GATC 4 cut(s) 10, 67, 79, 463
Sau96I GGNCC 4 cut(s) 92, 151, 181, 661
ScaI AGTACT 2 cut(s) 17, 595
SchI GAGTC 2 cut(s) 107, 390
ScrFI CCNGG 2 cut(s) 339, 434
SetI ASST 9 cut(s) 31, 65, 206, 250, 276, 314, 405, 417, 522
SfcI CTRYAG 2 cut(s) 205, 718
SgrAI CRCCGGYG 1 cut(s) 831
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 3 cut(s) 160, 428, 599
SsiI CCGC 3 cut(s) 326, 479, 758
SspI AATATT 2 cut(s) 577, 638
SspMI CTAG 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 337, 432
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 103, 410, 811
TaiI ACGT 2 cut(s) 250, 417
TaqI TCGA 2 cut(s) 244, 317
TasI AATT 3 cut(s) 160, 428, 599
TatI WGTACW 2 cut(s) 15, 593
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 1 cut(s) 280
TscAI CASTG 5 cut(s) 171, 466, 610, 692, 718
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 6 cut(s) 204, 400, 482, 720, 773, 776
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 27, 281, 641
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 5 cut(s) 171, 466, 610, 692, 718
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 2 cut(s) 160, 599
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 675
ZraI GACGTC 1 cut(s) 415
ZrmI AGTACT 2 cut(s) 17, 595
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.