Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0006264

Physical Location & Seq

Genomic Coordinates Reverse (-)

36199 .. 36582

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgcagcggaagttaaatcttccagtagttgcccttggagatcacaatgccggtggctttaatatttatttgacctatttgtgcgggagtgagaatatggcgtacgactccttaaacttaagcacaccagatattaagtggttgggtttgagtccttcagacctcatcgaacatgatatacccaatgggaatgagaaggtgcaaggacttgaaacaatcatgaagaaggattttgtcaagaaaactccgaaattggtcgaggaggtaagaaaaatggaaactaaagtcgacgttgagggtatgatgagaaagcacctcaaatatttgaccgagatatatctgccactaaaattccaaaggttgggcatgagtgattcggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

127

Amino Acids

14.47

Weight (kDa)

6.83

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	2 - 117	3.2e-25	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02820
fragaria_vesca	FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_2g03881 FvH4_6g05151
malus_domestica	MD04G1113900.v1.1
prunus_persica	Prupe.6G243200_v2.0.a1
pyrus_communis	pycom04g10130
rosa_chinensis	RchiOBHm_Chr2g0103111 RchiOBHm_Chr2g0116961 RchiOBHm_Chr3g0453711
rosa_laevigata	RLG00000018316
rosa_multiflora	Rmu_sc0003556.1_g000009 Rmu_sc0011969.1_g000014 Rmu_ssc0000238.1_g000021 Rmu_ssc0000238.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126860 Rroxscaffold_6G00430630
rosa_rugosa	Rorug02G0209000.1
rosa_samantha	Rh2AG265100 Rh2BG276800 Rh2DG272500 Rh2DG291500
rosa_wichuraiana	Rw2G020900 Rw3G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	2 cut(s)	7, 84
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflII	CTTAAG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	16
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	51
BsiWI	CGTACG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	2 cut(s)	7, 84
BspHI	TCATGA	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	34
BstAFI	CTTAAG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	3 cut(s)	173, 220, 367
CviJI	RGCY	1 cut(s)	57
CviKI_1	RGCY	1 cut(s)	57
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	3 cut(s)	176, 223, 370
FaiI	YATR	8 cut(s)	98, 174, 179, 221, 302, 337, 368, 382
FatI	CATG	3 cut(s)	172, 219, 366
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	3 cut(s)	176, 223, 370
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	107, 151, 374
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	160, 249
Hpy188III	TCNNGA	2 cut(s)	220, 238
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	165, 190, 220
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	4, 202
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	176, 223, 370
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	3 cut(s)	36, 64, 141
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	291
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	11, 235
MluCI	AATT	2 cut(s)	251, 350
MlyI	GAGTC	2 cut(s)	101, 160
MnlI	CCTC	5 cut(s)	173, 253, 256, 289, 326
MseI	TTAA	5 cut(s)	14, 60, 113, 119, 135
MspA1I	CMGCKG	1 cut(s)	7
MspCI	CTTAAG	1 cut(s)	118
MspI	CCGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	176, 223, 370
PagI	TCATGA	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	374
Pfl23II	CGTACG	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	101, 159
PpsI	GAGTC	2 cut(s)	101, 159
PspLI	CGTACG	1 cut(s)	102
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SalI	GTCGAC	1 cut(s)	287
SaqAI	TTAA	5 cut(s)	14, 60, 113, 119, 135
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	101, 160
SetI	ASST	7 cut(s)	77, 165, 201, 267, 294, 318, 362
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	2 cut(s)	251, 350
SsiI	CCGC	2 cut(s)	7, 84
SspI	AATATT	2 cut(s)	64, 323
StyI	CCWWGG	1 cut(s)	34
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	168, 258, 288
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	251, 350
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	5 cut(s)	14, 60, 113, 119, 135
Tru9I	TTAA	5 cut(s)	14, 60, 113, 119, 135
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.