Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003567.1

Orthogroup ID

OG0011306

Physical Location & Seq

Genomic Coordinates Reverse (-)

10090 .. 11404

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgctagaagtaccacgacctcagggtctgaattggtgtgatgggaggctaacgctgatgtctggtgaagcctggttcggtggcgctggggttgaggtttgggaattctctccatggtggaattgtccttggcttggatggcagaatataggggtcaagtttcacaacctcaatcccaactttacggtggcggtttttgggaagctagagtcaattttgtggaggttgaaagttaattgtgggtcgatgccattgttctggtgtcatggtcgttctgttgtgtcatggtttggtcttttgtcagtgctttttggttatcaacatgatggtgaatcacccttacacgtggtctggtggttttgggttgcggtgtccgaacgggtttggttgttactcattgtagctcgtgtgtatgagcgtaaaatttggttaggggttgggcctttttggctcatggaagtcactcatgttgacagtcccgtaactacagatctaatgctatataatctgtttgcccaatctctcaagtcggtaaaagggtactttagacattacgtacagctagctagggtttcactcagatataaaggaccaccttctcgttttgctccgccaaaagagaagaagaaccctagcgcagatcgaagctctcactctcttttcgaaatggccaagtcaaagaatcacacagctcacaaccagtcccgcaaggcccacaggaatggcatcaagaagccccagaggcaccgccacacctccaccaaggggatggatcccaagtttctgaggaaccagaggtacgccaggaagcacaacaacaccaagaccgaagagtcggccgaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L29e

Protein Analysis

282

Amino Acids

32.84

Weight (kDa)

9.95

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L29e	PF01779	225 - 264	6e-24	Ribosomal L29e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06680 AT3G06680 AT3G06680 AT3G06700 AT3G06700 AT3G06700
fragaria_vesca	FvH4_4g19430
malus_domestica	MD16G1157600.v1.1
prunus_persica	Prupe.1G122500_v2.0.a1 Prupe.1G122500_v2.0.a1
pyrus_communis	pycom13g13420 pycom16g13260
rosa_chinensis	RchiOBHm_Chr4g0424471
rosa_multiflora	Rmu_sc0002603.1_g000002 Rmu_sc0003567.1_g000006
rosa_roxburghii	Rroxscaffold_5G00366410
rosa_rugosa	Rorug02G0465500 Rorug04G0198000
rosa_samantha	Rh4BG259500
rosa_wichuraiana	Rw4G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	24, 832
AccB1I	GGYRCC	1 cut(s)	744
AciI	CCGC	5 cut(s)	191, 368, 611, 706, 748
AclWI	GGATC	2 cut(s)	767, 780
AcoI	YGGCCR	2 cut(s)	669, 837
AcsI	RAATTY	2 cut(s)	104, 423
AcvI	CACGTG	1 cut(s)	346
AfaI	GTAC	4 cut(s)	12, 542, 558, 800
AfiI	CCNNNNNNNGG	2 cut(s)	134, 765
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	71, 803
AluBI	AGCT	6 cut(s)	205, 404, 562, 566, 648, 692
AluI	AGCT	6 cut(s)	205, 404, 562, 566, 648, 692
AlwI	GGATC	2 cut(s)	767, 780
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	4 cut(s)	440, 669, 711, 837
ApoI	RAATTY	2 cut(s)	104, 423
AspLEI	GCGC	2 cut(s)	86, 638
AspS9I	GGNCC	3 cut(s)	440, 590, 712
AsuHPI	GGTGA	3 cut(s)	77, 327, 341
AsuII	TTCGAA	1 cut(s)	663
AsuNHI	GCTAGC	1 cut(s)	562
AvaII	GGWCC	1 cut(s)	590
AxyI	CCTNAGG	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	744
BauI	CACGAG	1 cut(s)	405
BbrPI	CACGTG	1 cut(s)	346
BccI	CCATC	4 cut(s)	35, 132, 320, 763
BciT130I	CCWGG	2 cut(s)	73, 805
BfaI	CTAG	5 cut(s)	5, 206, 563, 567, 633
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	87
BglI	GCCNNNNNGGC	2 cut(s)	448, 742
BglII	AGATCT	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	73, 805
Bme18I	GGWCC	1 cut(s)	590
BmgT120I	GGNCC	3 cut(s)	440, 590, 712
BmiI	GGNNCC	3 cut(s)	746, 774, 791
BmrFI	CCNGG	2 cut(s)	73, 805
BmsI	GCATC	2 cut(s)	237, 735
BmtI	GCTAGC	1 cut(s)	566
Bpu14I	TTCGAA	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	509
BsaAI	YACGTR	2 cut(s)	346, 556
BsaJI	CCNNGG	4 cut(s)	113, 128, 762, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 765
Bse1I	ACTGG	1 cut(s)	700
Bse21I	CCTNAGG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	73, 805
BseDI	CCNNGG	4 cut(s)	113, 128, 762, 840
BseGI	GGATG	2 cut(s)	143, 774
BseLI	CCNNNNNNNGG	2 cut(s)	134, 765
BseMII	CTCAG	3 cut(s)	35, 592, 776
BseNI	ACTGG	1 cut(s)	700
BseX3I	CGGCCG	1 cut(s)	837
BseYI	CCCAGC	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	840
BshFI	GGCC	4 cut(s)	442, 671, 713, 839
BshNI	GGYRCC	1 cut(s)	744
BsiEI	CGRYCG	1 cut(s)	840
BslFI	GGGAC	2 cut(s)	462, 688
BslI	CCNNNNNNNGG	2 cut(s)	134, 765
BsmFI	GGGAC	2 cut(s)	462, 688
BsnI	GGCC	4 cut(s)	442, 671, 713, 839
Bsp119I	TTCGAA	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	490, 640, 772
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	5 cut(s)	191, 368, 611, 706, 748
BspANI	GGCC	4 cut(s)	442, 671, 713, 839
BspCNI	CTCAG	3 cut(s)	34, 591, 777
BspLI	GGNNCC	3 cut(s)	746, 774, 791
BspOI	GCTAGC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	767, 780
BspT104I	TTCGAA	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	4 cut(s)	113, 128, 762, 840
BssMI	GATC	3 cut(s)	490, 640, 772
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	3 cut(s)	113, 128, 762
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	73, 805
Bst4CI	ACNGT	2 cut(s)	187, 476
Bst6I	CTCTTC	1 cut(s)	825
BstBAI	YACGTR	2 cut(s)	346, 556
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	3 cut(s)	21, 578, 785
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	143, 774
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 638
BstKTI	GATC	3 cut(s)	493, 643, 775
BstMBI	GATC	3 cut(s)	490, 640, 772
BstMCI	CGRYCG	1 cut(s)	840
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 448, 742
BstNI	CCWGG	2 cut(s)	73, 805
BstSCI	CCNGG	2 cut(s)	71, 803
BstSFI	CTRYAG	1 cut(s)	486
BstSNI	TACGTA	1 cut(s)	556
BstX2I	RGATCY	2 cut(s)	490, 772
BstXI	CCANNNNNNTGG	3 cut(s)	258, 722, 769
BstYI	RGATCY	2 cut(s)	490, 772
BstZI	CGGCCG	1 cut(s)	837
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	442, 671, 713, 839
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	143, 774
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	2 cut(s)	86, 638
Cfr13I	GGNCC	3 cut(s)	440, 590, 712
Csp6I	GTAC	4 cut(s)	11, 541, 557, 799
CviAII	CATG	6 cut(s)	114, 266, 285, 323, 454, 467
CviQI	GTAC	4 cut(s)	11, 541, 557, 799
DdeI	CTNAG	3 cut(s)	21, 578, 785
DpnI	GATC	3 cut(s)	492, 642, 774
DpnII	GATC	3 cut(s)	490, 640, 772
DrdI	GACNNNNNNGTC	2 cut(s)	24, 832
DseDI	GACNNNNNNGTC	2 cut(s)	24, 832
EaeI	YGGCCR	2 cut(s)	669, 837
EagI	CGGCCG	1 cut(s)	837
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
EciI	GGCGGA	1 cut(s)	600
EclXI	CGGCCG	1 cut(s)	837
Eco105I	TACGTA	1 cut(s)	556
Eco130I	CCWWGG	3 cut(s)	113, 128, 762
Eco47I	GGWCC	1 cut(s)	590
Eco52I	CGGCCG	1 cut(s)	837
Eco72I	CACGTG	1 cut(s)	346
Eco81I	CCTNAGG	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	71, 803
EcoT14I	CCWWGG	3 cut(s)	113, 128, 762
ErhI	CCWWGG	3 cut(s)	113, 128, 762
FaeI	CATG	6 cut(s)	117, 269, 288, 326, 457, 470
FaqI	GGGAC	2 cut(s)	462, 688
FatI	CATG	6 cut(s)	113, 265, 284, 322, 453, 466
FauI	CCCGC	1 cut(s)	713
FokI	GGATG	2 cut(s)	150, 781
FspBI	CTAG	5 cut(s)	5, 206, 563, 567, 633
GlaI	GCGC	2 cut(s)	85, 637
GsaI	CCCAGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	4 cut(s)	442, 671, 713, 839
HhaI	GCGC	2 cut(s)	86, 638
Hin1II	CATG	6 cut(s)	117, 269, 288, 326, 457, 470
Hin6I	GCGC	2 cut(s)	84, 636
HinP1I	GCGC	2 cut(s)	84, 636
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	4 cut(s)	209, 332, 682, 833
HphI	GGTGA	3 cut(s)	77, 327, 341
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	4 cut(s)	30, 376, 581, 786
Hpy188III	TCNNGA	1 cut(s)	730
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	1 cut(s)	606
HpyCH4III	ACNGT	2 cut(s)	187, 476
HpyCH4IV	ACGT	2 cut(s)	345, 555
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 448, 742
HpyF3I	CTNAG	3 cut(s)	21, 578, 785
HpySE526I	ACGT	2 cut(s)	345, 555
Hsp92II	CATG	6 cut(s)	117, 269, 288, 326, 457, 470
HspAI	GCGC	2 cut(s)	84, 636
Kzo9I	GATC	3 cut(s)	490, 640, 772
LmnI	GCTCC	1 cut(s)	613
LweI	GCATC	2 cut(s)	237, 735
MaeI	CTAG	5 cut(s)	5, 206, 563, 567, 633
MaeII	ACGT	2 cut(s)	345, 555
MaeIII	GTNAC	3 cut(s)	390, 460, 481
MalI	GATC	3 cut(s)	492, 642, 774
MboI	GATC	3 cut(s)	490, 640, 772
MboII	GAAGA	3 cut(s)	634, 637, 842
MflI	RGATCY	2 cut(s)	490, 772
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	6 cut(s)	31, 104, 121, 213, 235, 423
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	2 cut(s)	218, 842
Mox20I	TGGCCA	1 cut(s)	671
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	2 cut(s)	327, 720
Msp20I	TGGCCA	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	73, 805
MvaI	CCWGG	2 cut(s)	73, 805
MwoI	GCNNNNNNNGC	3 cut(s)	139, 448, 742
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	3 cut(s)	490, 640, 772
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	6 cut(s)	117, 269, 288, 326, 457, 470
NlaIV	GGNNCC	3 cut(s)	746, 774, 791
NmuCI	GTSAC	1 cut(s)	460
NspV	TTCGAA	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	332, 682
PleI	GAGTC	2 cut(s)	217, 841
PmaCI	CACGTG	1 cut(s)	346
PmlI	CACGTG	1 cut(s)	346
PpsI	GAGTC	2 cut(s)	217, 841
Ppu21I	YACGTR	2 cut(s)	346, 556
Psp6I	CCWGG	2 cut(s)	71, 803
PspCI	CACGTG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	2 cut(s)	71, 803
PspN4I	GGNNCC	3 cut(s)	746, 774, 791
PspPI	GGNCC	3 cut(s)	440, 590, 712
PsrI	GAACNNNNNNTAC	2 cut(s)	782, 814
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	490, 772
RsaI	GTAC	4 cut(s)	12, 542, 558, 800
RsaNI	GTAC	4 cut(s)	11, 541, 557, 799
RseI	CAYNNNNRTG	2 cut(s)	327, 720
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	3 cut(s)	490, 640, 772
Sau96I	GGNCC	3 cut(s)	440, 590, 712
SchI	GAGTC	2 cut(s)	218, 842
ScrFI	CCNGG	2 cut(s)	73, 805
SfaNI	GCATC	2 cut(s)	237, 735
SfcI	CTRYAG	1 cut(s)	486
SfuI	TTCGAA	1 cut(s)	663
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	2 cut(s)	327, 720
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SnaBI	TACGTA	1 cut(s)	556
Sse9I	AATT	6 cut(s)	31, 104, 121, 213, 235, 423
SsiI	CCGC	5 cut(s)	191, 368, 611, 706, 748
SspMI	CTAG	5 cut(s)	5, 206, 563, 567, 633
StyD4I	CCNGG	2 cut(s)	71, 803
StyI	CCWWGG	3 cut(s)	113, 128, 762
TaaI	ACNGT	2 cut(s)	187, 476
TaiI	ACGT	2 cut(s)	348, 558
TaqI	TCGA	3 cut(s)	245, 643, 663
TaqII	GACCGA	1 cut(s)	842
TasI	AATT	6 cut(s)	31, 104, 121, 213, 235, 423
TfiI	GAWTC	2 cut(s)	332, 682
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	460
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	2 cut(s)	104, 423
XcmI	CCANNNNNNNNNTGG	2 cut(s)	184, 766
XspI	CTAG	5 cut(s)	5, 206, 563, 567, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.