Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003703.1

Orthogroup ID

OG0014852

Physical Location & Seq

Genomic Coordinates Forward (+)

25622 .. 28894

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgggtggtaagatgggtgttggtttcatcgggatctatagtttgttggctttgggtcgatggagggtgtgttggggtattgggtcaatggtggcttatagaagtttgggtggtctaacaagggaggctaatgcaaggagtatttgtttggttgcggttgcgtctgcgaggttccttgtcatgggccgtttcttggatgcagttgtttctaggaagcttgctacgcatgattctgggctcggtggttatggggcaattttttttgattatagagggaattaccttggttcttttgcttccaatcttgacatttctagttcagtggcggcagagattatggcagttattaaggacattgaacttgcttggaatgtgaaggttgttgaggatttggtggaggctataagcgaagacgatgcaaagagcgatgtggtggatctaatgagcgacgacgagcctagaaacgatgtggcggagtcgaaggtcactgaagacgaattgaagaacggtgttgtggagatggccatggataatgcgcaaaacgttgggtctgttggtaacgaagatgaggctaagcagagagggggcaatataattagacgccggaatccggtcaccagtccggtagtcgaattcgggattccggtgaccgctcgccggattccggtcgccggtcgccggagagcagccaaccacctgtcaccggtcaccggagtctgcggcagaccaccggttactggagttcggcaaggtcttcgatggggattccggtcgccggagagcagccaaccacctgtcaccggtcaccggagtctgcggcagaccaccggttactggagttcggcaaggcggattccggtcgccggtcgccggagagcagccaaccacctgtcaccggtcaccggagtctgcggcagaccaccggttactggagttcggcaaggtcttcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

317

Amino Acids

34.12

Weight (kDa)

9.79

Isoelectric Point (pI)

61.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406981
rosa_laevigata	RLG00000004763 RLG00000013935 RLG00000019502 RLG00000022688 RLG00000029211 RLG00000033773
rosa_multiflora	Rmu_sc0003703.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261010
rosa_samantha	Rh1DG041700 Rh2AG507700 Rh3DG363700 Rh4BG060700 Rh4DG250100 Rh5DG190600 Rh6DG375400
rosa_wichuraiana	Rw4G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	537
AccBSI	CCGCTC	1 cut(s)	653
AciI	CCGC	8 cut(s)	155, 326, 473, 651, 720, 817, 850, 912
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	2 cut(s)	41, 444
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	601
AgeI	ACCGGT	6 cut(s)	703, 730, 800, 827, 895, 922
AgsI	TTSAA	2 cut(s)	359, 502
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AlwI	GGATC	2 cut(s)	41, 444
AoxI	GGCC	2 cut(s)	184, 522
ApeKI	GCWGC	3 cut(s)	686, 783, 878
ApoI	RAATTY	1 cut(s)	632
AsiGI	ACCGGT	6 cut(s)	703, 730, 800, 827, 895, 922
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	8 cut(s)	607, 658, 693, 700, 790, 797, 885, 892
BalI	TGGCCA	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	4 cut(s)	417, 498, 746, 938
BbvI	GCAGC	3 cut(s)	698, 795, 890
BccI	CCATC	4 cut(s)	7, 54, 514, 753
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	5 cut(s)	398, 432, 737, 771, 929
BfaI	CTAG	3 cut(s)	210, 315, 459
BfmI	CTRYAG	1 cut(s)	37
BisI	GCNGC	7 cut(s)	327, 687, 721, 784, 818, 879, 913
BlpI	GCTNAGC	1 cut(s)	573
BlsI	GCNGC	7 cut(s)	328, 688, 722, 785, 819, 880, 914
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	173
BmsI	GCATC	2 cut(s)	187, 406
BpiI	GAAGAC	4 cut(s)	417, 498, 746, 938
BpmI	CTGGAG	3 cut(s)	759, 856, 951
Bpu1102I	GCTNAGC	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	283, 525
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 130, 160
Bse118I	RCCGGY	8 cut(s)	671, 703, 730, 800, 827, 863, 895, 922
Bse1I	ACTGG	4 cut(s)	618, 742, 839, 934
BseDI	CCNNGG	2 cut(s)	283, 525
BseGI	GGATG	1 cut(s)	202
BseNI	ACTGG	4 cut(s)	618, 742, 839, 934
BseXI	GCAGC	3 cut(s)	698, 795, 890
Bsh1285I	CGRYCG	5 cut(s)	669, 676, 773, 861, 868
BshFI	GGCC	2 cut(s)	186, 524
BshTI	ACCGGT	6 cut(s)	703, 730, 800, 827, 895, 922
BsiEI	CGRYCG	5 cut(s)	669, 676, 773, 861, 868
BsnI	GGCC	2 cut(s)	186, 524
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	33, 436
Bsp1720I	GCTNAGC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	8 cut(s)	155, 326, 473, 651, 720, 817, 850, 912
BspANI	GGCC	2 cut(s)	186, 524
BspLI	GGNNCC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	41, 444
BsrBI	CCGCTC	1 cut(s)	653
BsrFI	RCCGGY	8 cut(s)	671, 703, 730, 800, 827, 863, 895, 922
BsrI	ACTGG	4 cut(s)	618, 742, 839, 934
BssAI	RCCGGY	8 cut(s)	671, 703, 730, 800, 827, 863, 895, 922
BssECI	CCNNGG	2 cut(s)	283, 525
BssMI	GATC	2 cut(s)	33, 436
BssNI	GRCGYC	1 cut(s)	601
BssT1I	CCWWGG	2 cut(s)	283, 525
Bst4CI	ACNGT	1 cut(s)	509
BstACI	GRCGYC	1 cut(s)	601
BstC8I	GCNNGC	2 cut(s)	219, 655
BstDEI	CTNAG	1 cut(s)	573
BstDSI	CCRYGG	1 cut(s)	525
BstEII	GGTNACC	5 cut(s)	613, 646, 706, 803, 898
BstF5I	GGATG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	2 cut(s)	36, 439
BstMBI	GATC	2 cut(s)	33, 436
BstMCI	CGRYCG	5 cut(s)	669, 676, 773, 861, 868
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstPI	GGTNACC	5 cut(s)	613, 646, 706, 803, 898
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	698, 795, 890
BstV2I	GAAGAC	4 cut(s)	417, 498, 746, 938
BstX2I	RGATCY	2 cut(s)	33, 436
BstYI	RGATCY	2 cut(s)	33, 436
BsuRI	GGCC	2 cut(s)	186, 524
BtgI	CCRYGG	1 cut(s)	525
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	327, 486
Cac8I	GCNNGC	2 cut(s)	219, 655
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	8 cut(s)	671, 703, 730, 800, 827, 863, 895, 922
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	2 cut(s)	150, 609
CspAI	ACCGGT	6 cut(s)	703, 730, 800, 827, 895, 922
CviAII	CATG	3 cut(s)	181, 227, 526
DdeI	CTNAG	1 cut(s)	573
DpnI	GATC	2 cut(s)	35, 438
DpnII	GATC	2 cut(s)	33, 436
EaeI	YGGCCR	1 cut(s)	522
EciI	GGCGGA	2 cut(s)	488, 865
Eco130I	CCWWGG	2 cut(s)	283, 525
Eco24I	GRGCYC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	510
Eco91I	GGTNACC	5 cut(s)	613, 646, 706, 803, 898
EcoO65I	GGTNACC	5 cut(s)	613, 646, 706, 803, 898
EcoRI	GAATTC	1 cut(s)	632
EcoT14I	CCWWGG	2 cut(s)	283, 525
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	283, 525
FaeI	CATG	3 cut(s)	184, 230, 529
FatI	CATG	3 cut(s)	180, 226, 525
Fnu4HI	GCNGC	7 cut(s)	327, 687, 721, 784, 818, 879, 913
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	7 cut(s)	327, 687, 721, 784, 818, 879, 913
FspBI	CTAG	3 cut(s)	210, 315, 459
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	7 cut(s)	327, 687, 721, 784, 818, 879, 913
GsuI	CTGGAG	3 cut(s)	759, 856, 951
HaeIII	GGCC	2 cut(s)	186, 524
HgaI	GACGC	2 cut(s)	150, 609
HhaI	GCGC	1 cut(s)	538
Hin1I	GRCGYC	1 cut(s)	601
Hin1II	CATG	3 cut(s)	184, 230, 529
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	215
HphI	GGTGA	8 cut(s)	607, 658, 693, 700, 790, 797, 885, 892
Hpy188III	TCNNGA	3 cut(s)	31, 305, 637
Hpy99I	CGWCG	2 cut(s)	452, 455
HpyAV	CCTTC	2 cut(s)	370, 475
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	3 cut(s)	134, 200, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	573
HpySE526I	ACGT	1 cut(s)	543
Hsp92I	GRCGYC	1 cut(s)	601
Hsp92II	CATG	3 cut(s)	184, 230, 529
HspAI	GCGC	1 cut(s)	536
Kzo9I	GATC	2 cut(s)	33, 436
Lsp1109I	GCAGC	3 cut(s)	698, 795, 890
LweI	GCATC	2 cut(s)	187, 406
MaeI	CTAG	3 cut(s)	210, 315, 459
MaeII	ACGT	1 cut(s)	543
MalI	GATC	2 cut(s)	35, 438
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	2 cut(s)	33, 436
MboII	GAAGA	6 cut(s)	422, 503, 514, 575, 746, 938
MflI	RGATCY	2 cut(s)	33, 436
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	5 cut(s)	255, 277, 497, 594, 632
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	4 cut(s)	485, 723, 820, 915
MnlI	CCTC	8 cut(s)	57, 118, 162, 266, 379, 391, 562, 575
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	223
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	2 cut(s)	33, 436
NlaIII	CATG	3 cut(s)	184, 230, 529
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	9 cut(s)	484, 613, 646, 699, 706, 796, 803, 891, 898
NsbI	TGCGCA	1 cut(s)	537
PfeI	GAWTC	6 cut(s)	230, 607, 640, 661, 765, 853
PinAI	ACCGGT	6 cut(s)	703, 730, 800, 827, 895, 922
PkrI	GCNGC	7 cut(s)	328, 688, 722, 785, 819, 880, 914
PleI	GAGTC	4 cut(s)	484, 722, 819, 914
PpsI	GAGTC	4 cut(s)	484, 722, 819, 914
Psp1406I	AACGTT	1 cut(s)	543
PspEI	GGTNACC	5 cut(s)	613, 646, 706, 803, 898
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	33, 436
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	7 cut(s)	327, 687, 721, 784, 818, 879, 913
Sau3AI	GATC	2 cut(s)	33, 436
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	4 cut(s)	485, 723, 820, 915
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	187, 406
SfcI	CTRYAG	1 cut(s)	37
Sse9I	AATT	5 cut(s)	255, 277, 497, 594, 632
SsiI	CCGC	8 cut(s)	155, 326, 473, 651, 720, 817, 850, 912
SspMI	CTAG	3 cut(s)	210, 315, 459
StyI	CCWWGG	2 cut(s)	283, 525
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	5 cut(s)	58, 479, 630, 757, 949
TasI	AATT	5 cut(s)	255, 277, 497, 594, 632
TauI	GCSGC	4 cut(s)	329, 723, 820, 915
TfiI	GAWTC	6 cut(s)	230, 607, 640, 661, 765, 853
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	327, 493
TseFI	GTSAC	9 cut(s)	484, 613, 646, 699, 706, 796, 803, 891, 898
TseI	GCWGC	3 cut(s)	686, 783, 878
Tsp45I	GTSAC	9 cut(s)	484, 613, 646, 699, 706, 796, 803, 891, 898
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	2 cut(s)	327, 493
XapI	RAATTY	1 cut(s)	632
XspI	CTAG	3 cut(s)	210, 315, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.