Rmu_sc0003714.1_g000001

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003714.1
OG0014804
Physical Location & Seq
Forward (+)
200 .. 1357
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
atgggtgcttatgatcaaggttctaatgggttttcccagcccttgggtagttctaagaaaaggggacgacgaagtaacaaggatggagccagtgttttggagactctgtcaaggtggaaagaatataacaatcttttagagtctgggatttacgatgacaaggcgcgtaagattcaggccaaggggtcgaagaagggttgtatgaaaggtaaaggagggccggagaatcagcggtgtaattacagaggagttaggcagaggacgtggggaaagtgggttgcagaaatccgagagccgaacagaggaagtaggctttggttgggtacttttcccacggctgttgatgctgcacttgcttatgatgaagctgcaaaagccatgtatggtgccactgctcgccttaaccaccctaatgtatacagtcacaacagttatacatcttcttggaatgactcgtcacatgaaacttcgtcagtcacaactccatcagggtgttctactgtggcaacacaaggatgctgtgaatctactatgatatcaaatcagtctgatcactccgagatctgtgcagaggaggaatcttttatagtgaaaactgaggatggtgaggatgaatcgactagtcataatgcatttactcaacccaggacgtctaatgctacggcagatgtagaagtgaaaagtgaggttcctatgcaccacttccacacagatcaacctggagtccaagagcaggcacgtgactggattagcacagatggctttgatatggattattacttgaagcagttttcaattgatgagctttttgatgtggacgagcttgtcggccctatggatggtaaacccatccctgctccgagattgcagcaagatttaagctccgatgttggtcgtcctcagttcacggatatggtccctgttgataataatgccacactatcggattcatcataccagttacagtatccagatgacaagcctcctggtggtaatgtgcagcatatggacgtggagccatcagttgccgactatggttttgatttgttaaatcgtcagatgcaagagaataatgttggagtagataatcacggatacttcaacgtagatgatttcgatttcaatttcactggaggctgcggcggcaatgcaaactga

Protein Analysis

385

Amino Acids

42.57

Weight (kDa)

4.83

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 80 - 129 2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014804)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25200 FvH4_7g25200
malus_domestica MD01G1158600.v1.1
prunus_persica Prupe.2G256900_v2.0.a1
pyrus_communis pycom01g17530 pycom07g20590
rosa_chinensis RchiOBHm_Chr1g0371151
rosa_laevigata RLG00000026982
rosa_multiflora Rmu_co8262865.1_g000001 Rmu_sc0003714.1_g000001
rosa_roxburghii Rroxscaffold_4G00285920
rosa_rugosa Rorug01G0361800
rosa_samantha Rh1AG371900 Rh1BG335300 Rh1CG348800 Rh1DG366800
rosa_wichuraiana Rw1G032710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 824
AatII GACGTC 1 cut(s) 653
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 43
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 166
AciI CCGC 3 cut(s) 232, 1140, 1143
AcvI CACGTG 1 cut(s) 740
AcyI GRCGYC 1 cut(s) 650
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 839, 989
AgsI TTSAA 4 cut(s) 784, 795, 1102, 1123
AhlI ACTAGT 1 cut(s) 620
AjiI CACGTC 2 cut(s) 264, 1012
AjnI CCWGG 3 cut(s) 644, 718, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 4 cut(s) 368, 805, 823, 882
AluI AGCT 4 cut(s) 368, 805, 823, 882
Alw26I GTCTC 1 cut(s) 95
AoxI GGCC 3 cut(s) 177, 218, 829
ApeKI GCWGC 5 cut(s) 347, 368, 868, 1000, 1137
ArsI GACNNNNNNTTYG 2 cut(s) 1022, 1054
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 3 cut(s) 218, 830, 916
AsuHPI GGTGA 1 cut(s) 617
AvaII GGWCC 1 cut(s) 916
BanI GGYRCC 1 cut(s) 386
BbrPI CACGTG 1 cut(s) 740
BbvI GCAGC 5 cut(s) 334, 355, 880, 1012, 1124
BccI CCATC 7 cut(s) 77, 493, 596, 752, 833, 857, 1027
BceAI ACGGC 2 cut(s) 351, 678
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 3 cut(s) 646, 720, 987
BciVI GTATCC 2 cut(s) 978, 1088
BclI TGATCA 2 cut(s) 13, 550
BcoDI GTCTC 1 cut(s) 95
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 1 cut(s) 621
BfuI GTATCC 2 cut(s) 978, 1088
BglII AGATCT 1 cut(s) 561
BisI GCNGC 7 cut(s) 348, 369, 869, 1001, 1138, 1141, 1144
BlsI GCNGC 7 cut(s) 349, 370, 870, 1002, 1139, 1142, 1145
Bme1390I CCNGG 3 cut(s) 646, 720, 987
Bme18I GGWCC 1 cut(s) 916
BmgBI CACGTC 2 cut(s) 264, 1012
BmgT120I GGNCC 3 cut(s) 218, 830, 916
BmiI GGNNCC 5 cut(s) 88, 388, 690, 918, 1017
BmrFI CCNGG 3 cut(s) 646, 720, 987
BmsI GCATC 3 cut(s) 334, 506, 1050
BpmI CTGGAG 2 cut(s) 741, 1152
BsaAI YACGTR 1 cut(s) 740
BsaHI GRCGYC 1 cut(s) 650
BsaJI CCNNGG 4 cut(s) 42, 180, 333, 644
BsaXI ACNNNNNCTCC 4 cut(s) 78, 92, 108, 122
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 302, 733, 839, 989
Bse1I ACTGG 4 cut(s) 90, 749, 958, 1135
Bse3DI GCAATG 1 cut(s) 1153
BseBI CCWGG 3 cut(s) 646, 720, 987
BseDI CCNNGG 4 cut(s) 42, 180, 333, 644
BseGI GGATG 6 cut(s) 88, 521, 607, 616, 844, 849
BseLI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 839, 989
BseMI GCAATG 1 cut(s) 1153
BseMII CTCAG 2 cut(s) 588, 914
BseNI ACTGG 4 cut(s) 90, 749, 958, 1135
BseRI GAGGAG 2 cut(s) 261, 587
BseXI GCAGC 5 cut(s) 334, 355, 880, 1012, 1124
BseYI CCCAGC 1 cut(s) 36
BsgI GTGCAG 3 cut(s) 333, 588, 1019
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 179, 220, 831
BshNI GGYRCC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 78, 902
BslI CCNNNNNNNGG 5 cut(s) 43, 302, 733, 839, 989
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 78, 902
BsnI GGCC 3 cut(s) 179, 220, 831
Bsp143I GATC 4 cut(s) 13, 550, 561, 712
BspACI CCGC 3 cut(s) 232, 1140, 1143
BspANI GGCC 3 cut(s) 179, 220, 831
BspCNI CTCAG 2 cut(s) 589, 913
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 5 cut(s) 88, 388, 690, 918, 1017
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 1153
BsrI ACTGG 4 cut(s) 90, 749, 958, 1135
BssECI CCNNGG 4 cut(s) 42, 180, 333, 644
BssMI GATC 4 cut(s) 13, 550, 561, 712
BssNAI GTATAC 1 cut(s) 418
BssNI GRCGYC 1 cut(s) 650
BssT1I CCWWGG 2 cut(s) 42, 180
Bst1107I GTATAC 1 cut(s) 418
Bst2UI CCWGG 3 cut(s) 646, 720, 987
Bst4CI ACNGT 4 cut(s) 422, 431, 502, 966
BstACI GRCGYC 1 cut(s) 650
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 397, 735
BstDEI CTNAG 3 cut(s) 54, 597, 900
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 6 cut(s) 88, 521, 607, 616, 844, 849
BstFNI CGCG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 4 cut(s) 16, 553, 564, 715
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 13, 550, 561, 712
BstMWI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1143
BstNI CCWGG 3 cut(s) 646, 720, 987
BstSCI CCNGG 3 cut(s) 644, 718, 985
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 5 cut(s) 334, 355, 880, 1012, 1124
BstX2I RGATCY 1 cut(s) 561
BstXI CCANNNNNNTGG 1 cut(s) 97
BstYI RGATCY 1 cut(s) 561
BstZ17I GTATAC 1 cut(s) 418
BsuI GTATCC 2 cut(s) 978, 1088
BsuRI GGCC 3 cut(s) 179, 220, 831
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 2 cut(s) 264, 1012
BtsCI GGATG 6 cut(s) 88, 521, 607, 616, 844, 849
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 3 cut(s) 97, 390, 1128
Cac8I GCNNGC 2 cut(s) 397, 735
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 3 cut(s) 218, 830, 916
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 2 cut(s) 379, 461
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 54, 597, 900
DpnI GATC 4 cut(s) 15, 552, 563, 714
DpnII GATC 4 cut(s) 13, 550, 561, 712
DrdI GACNNNNNNGTC 1 cut(s) 824
DseDI GACNNNNNNGTC 1 cut(s) 824
Eco130I CCWWGG 2 cut(s) 42, 180
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 916
Eco72I CACGTG 1 cut(s) 740
EcoRII CCWGG 3 cut(s) 644, 718, 985
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 42, 180
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 42, 180
FaeI CATG 2 cut(s) 382, 464
FaqI GGGAC 2 cut(s) 78, 902
FatI CATG 2 cut(s) 378, 460
FauNDI CATATG 1 cut(s) 1005
FbaI TGATCA 2 cut(s) 13, 550
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 7 cut(s) 348, 369, 869, 1001, 1138, 1141, 1144
FokI GGATG 6 cut(s) 95, 528, 614, 623, 836, 851
Fsp4HI GCNGC 7 cut(s) 348, 369, 869, 1001, 1138, 1141, 1144
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 165
GluI GCNGC 7 cut(s) 348, 369, 869, 1001, 1138, 1141, 1144
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 741, 1152
HaeIII GGCC 3 cut(s) 179, 220, 831
HapII CCGG 1 cut(s) 221
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 650
Hin1II CATG 2 cut(s) 382, 464
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 4 cut(s) 418, 817, 845, 906
Hpy188I TCNGA 7 cut(s) 290, 550, 559, 861, 886, 946, 1059
Hpy188III TCNNGA 1 cut(s) 971
Hpy8I GTNNAC 4 cut(s) 418, 817, 845, 906
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 4 cut(s) 422, 431, 502, 966
HpyCH4IV ACGT 5 cut(s) 263, 650, 739, 1011, 1104
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1143
HpyF3I CTNAG 3 cut(s) 54, 597, 900
HpySE526I ACGT 5 cut(s) 263, 650, 739, 1011, 1104
Hsp92I GRCGYC 1 cut(s) 650
Hsp92II CATG 2 cut(s) 382, 464
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 2 cut(s) 13, 550
Kzo9I GATC 4 cut(s) 13, 550, 561, 712
LmnI GCTCC 4 cut(s) 86, 862, 887, 1015
Lsp1109I GCAGC 5 cut(s) 334, 355, 880, 1012, 1124
LweI GCATC 3 cut(s) 334, 506, 1050
MaeI CTAG 1 cut(s) 621
MaeII ACGT 5 cut(s) 263, 650, 739, 1011, 1104
MaeIII GTNAC 6 cut(s) 74, 422, 456, 475, 740, 960
MalI GATC 4 cut(s) 15, 552, 563, 714
MboI GATC 4 cut(s) 13, 550, 561, 712
MboII GAAGA 2 cut(s) 202, 432
MfeI CAATTG 1 cut(s) 795
MflI RGATCY 1 cut(s) 561
MluCI AATT 3 cut(s) 238, 795, 1123
MlyI GAGTC 4 cut(s) 97, 149, 446, 732
MmeI TCCRAC 1 cut(s) 1057
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 402, 878, 1049
MslI CAYNNNNRTG 4 cut(s) 411, 490, 514, 911
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 3 cut(s) 646, 720, 987
MunI CAATTG 1 cut(s) 795
MvaI CCWGG 3 cut(s) 646, 720, 987
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 5 cut(s) 344, 353, 374, 759, 1143
NdeI CATATG 1 cut(s) 1005
NdeII GATC 4 cut(s) 13, 550, 561, 712
NlaIII CATG 2 cut(s) 382, 464
NlaIV GGNNCC 5 cut(s) 88, 388, 690, 918, 1017
NmuCI GTSAC 4 cut(s) 422, 456, 475, 740
NsiI ATGCAT 1 cut(s) 634
PfeI GAWTC 6 cut(s) 172, 226, 524, 578, 614, 947
PflFI GACNNNGTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 7 cut(s) 349, 370, 870, 1002, 1139, 1142, 1145
PleI GAGTC 4 cut(s) 97, 148, 446, 731
PmaCI CACGTG 1 cut(s) 740
PmlI CACGTG 1 cut(s) 740
PpsI GAGTC 4 cut(s) 97, 148, 446, 731
Ppu21I YACGTR 1 cut(s) 740
Psp6I CCWGG 3 cut(s) 644, 718, 985
PspCI CACGTG 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 3 cut(s) 644, 718, 985
PspN4I GGNNCC 5 cut(s) 88, 388, 690, 918, 1017
PspPI GGNCC 3 cut(s) 218, 830, 916
PsuI RGATCY 1 cut(s) 561
PsyI GACNNNGTC 1 cut(s) 106
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 4 cut(s) 411, 490, 514, 911
SaqAI TTAA 3 cut(s) 402, 878, 1049
SatI GCNGC 7 cut(s) 348, 369, 869, 1001, 1138, 1141, 1144
Sau3AI GATC 4 cut(s) 13, 550, 561, 712
Sau96I GGNCC 3 cut(s) 218, 830, 916
SchI GAGTC 4 cut(s) 97, 149, 446, 732
ScrFI CCNGG 3 cut(s) 646, 720, 987
SfaNI GCATC 3 cut(s) 334, 506, 1050
SinI GGWCC 1 cut(s) 916
SmiMI CAYNNNNRTG 4 cut(s) 411, 490, 514, 911
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 3 cut(s) 238, 795, 1123
SsiI CCGC 3 cut(s) 232, 1140, 1143
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 3 cut(s) 644, 718, 985
StyI CCWWGG 2 cut(s) 42, 180
TaaI ACNGT 4 cut(s) 422, 431, 502, 966
TaiI ACGT 5 cut(s) 266, 653, 742, 1014, 1107
TaqI TCGA 3 cut(s) 188, 617, 1116
TasI AATT 3 cut(s) 238, 795, 1123
TauI GCSGC 2 cut(s) 1143, 1146
TfiI GAWTC 6 cut(s) 172, 226, 524, 578, 614, 947
Tru1I TTAA 3 cut(s) 402, 878, 1049
Tru9I TTAA 3 cut(s) 402, 878, 1049
TscAI CASTG 3 cut(s) 97, 397, 1135
TseFI GTSAC 4 cut(s) 422, 456, 475, 740
TseI GCWGC 5 cut(s) 347, 368, 868, 1000, 1137
Tsp45I GTSAC 4 cut(s) 422, 456, 475, 740
TspDTI ATGAA 5 cut(s) 218, 378, 477, 627, 939
TspGWI ACGGA 2 cut(s) 923, 1107
TspRI CASTG 3 cut(s) 97, 397, 1135
Tth111I GACNNNGTC 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 916
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 1 cut(s) 621
ZraI GACGTC 1 cut(s) 651
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.